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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>17186_17186_1_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000320081_BRE_chr2_28521205_ENST00000342045_length(amino acids)=116AA_BP=44
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCVDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNE

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>17186_17186_2_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000320081_BRE_chr2_28521205_ENST00000344773_length(amino acids)=163AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQRDAKGAEMPAA

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>17186_17186_3_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000320081_BRE_chr2_28521205_ENST00000361704_length(amino acids)=129AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQKERATEMGRNP

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>17186_17186_4_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000320081_BRE_chr2_28521205_ENST00000379624_length(amino acids)=116AA_BP=44
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCVDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNE

--------------------------------------------------------------

>17186_17186_5_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000320081_BRE_chr2_28521205_ENST00000379632_length(amino acids)=129AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQKERATEMGRNP

--------------------------------------------------------------

>17186_17186_6_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000401605_BRE_chr2_28521205_ENST00000342045_length(amino acids)=116AA_BP=44
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCVDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNE

--------------------------------------------------------------

>17186_17186_7_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000401605_BRE_chr2_28521205_ENST00000344773_length(amino acids)=163AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQRDAKGAEMPAA

--------------------------------------------------------------

>17186_17186_8_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000401605_BRE_chr2_28521205_ENST00000361704_length(amino acids)=129AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQKERATEMGRNP

--------------------------------------------------------------

>17186_17186_9_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000401605_BRE_chr2_28521205_ENST00000379624_length(amino acids)=116AA_BP=44
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCVDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNE

--------------------------------------------------------------

>17186_17186_10_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000401605_BRE_chr2_28521205_ENST00000379632_length(amino acids)=129AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQKERATEMGRNP

--------------------------------------------------------------

>17186_17186_11_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000404424_BRE_chr2_28521205_ENST00000342045_length(amino acids)=116AA_BP=44
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCVDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNE

--------------------------------------------------------------

>17186_17186_12_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000404424_BRE_chr2_28521205_ENST00000344773_length(amino acids)=163AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQRDAKGAEMPAA

--------------------------------------------------------------

>17186_17186_13_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000404424_BRE_chr2_28521205_ENST00000361704_length(amino acids)=129AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQKERATEMGRNP

--------------------------------------------------------------

>17186_17186_14_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000404424_BRE_chr2_28521205_ENST00000379624_length(amino acids)=116AA_BP=44
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCVDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNE

--------------------------------------------------------------

>17186_17186_15_CLIP4-BRE_CLIP4_chr2_29344387_ENST00000404424_BRE_chr2_28521205_ENST00000379632_length(amino acids)=129AA_BP=28
MEDTHLYFLLLIPQLSFPFLQHQCLQTVLTCLCFSLETSQLSHFSPFITLPTVDSFTPRPKKIIRTAPDGMEMKWPKEQKERATEMGRNP

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