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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>17208_17208_1_CLK3-CAPN8_CLK3_chr15_74912566_ENST00000345005_CAPN8_chr1_223718212_ENST00000366872_length(amino acids)=226AA_BP=134
MECTGRNGAVQMHHCKRYRSPEPDPYLSYRWKRRRSYSREHEGRLRYPSRREPPPRRSRSRSHDRLPYQRRYRERRDSDTYRCEERSPSF
GEDYYGPSRSRHRRRSRERGPYRTRKHAHHCHKRRTRSCSSASSEIYWETDYNHSGTIDAHEMRTALRKAGFTLNSQVQQTIALRYACSK

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>17208_17208_2_CLK3-CAPN8_CLK3_chr15_74912566_ENST00000348245_CAPN8_chr1_223718212_ENST00000366872_length(amino acids)=215AA_BP=123
MHHCKRYRSPEPDPYLSYRWKRRRSYSREHEGRLRYPSRREPPPRRSRSRSHDRLPYQRRYRERRDSDTYRCEERSPSFGEDYYGPSRSR
HRRRSRERGPYRTRKHAHHCHKRRTRSCSSASSEIYWETDYNHSGTIDAHEMRTALRKAGFTLNSQVQQTIALRYACSKLGINFDSFVAC

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>17208_17208_3_CLK3-CAPN8_CLK3_chr15_74912566_ENST00000352989_CAPN8_chr1_223718212_ENST00000366872_length(amino acids)=215AA_BP=123
MHHCKRYRSPEPDPYLSYRWKRRRSYSREHEGRLRYPSRREPPPRRSRSRSHDRLPYQRRYRERRDSDTYRCEERSPSFGEDYYGPSRSR
HRRRSRERGPYRTRKHAHHCHKRRTRSCSSASSEIYWETDYNHSGTIDAHEMRTALRKAGFTLNSQVQQTIALRYACSKLGINFDSFVAC

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>17208_17208_4_CLK3-CAPN8_CLK3_chr15_74912566_ENST00000395066_CAPN8_chr1_223718212_ENST00000366872_length(amino acids)=417AA_BP=325
MASWERHHGFQKTRTHQDNNVSFARFAQAESRPPSRAPAHRPQAALALSGAPRTMPVLSARRRELADHAGSGRRSGPSPTARSGPHLSAL
RAQPARAAHLSGRGTYVRRDTAGGGPGQARPLGPPGTSLLGRGARRSGEGWCPGAFESGARAARPPSRVEPRLATAASREGAGLPRAEVA
AGSGRGARSGEWGLAAAGAWETMHHCKRYRSPEPDPYLSYRWKRRRSYSREHEGRLRYPSRREPPPRRSRSRSHDRLPYQRRYRERRDSD
TYRCEERSPSFGEDYYGPSRSRHRRRSRERGPYRTRKHAHHCHKRRTRSCSSASSEIYWETDYNHSGTIDAHEMRTALRKAGFTLNSQVQ

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