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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>27207_27207_1_ERBB3-COX4I2_ERBB3_chr12_56474166_ENST00000267101_COX4I2_chr20_30231206_ENST00000376075_length(amino acids)=209AA_BP=1
MGLRAGEGRGRQRLPARAEPQGDSWGCKSLLPLLLLIVPAGGQALHRIHLHVQHALQLLGFPLVRQGDRLWRKYVDPLPPNHQSCESNEE
EDTTHHCLPLIGATVHLRKGLIELEPVHCLRVAHLGAPGQAEKQAQHLQSVVRPHDSAEGEGSPAKSGPGAPRLGHRGKSHLNRWRIGGC

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>27207_27207_2_ERBB3-COX4I2_ERBB3_chr12_56474166_ENST00000267101_COX4I2_chr20_30231207_ENST00000376075_length(amino acids)=209AA_BP=1
MGLRAGEGRGRQRLPARAEPQGDSWGCKSLLPLLLLIVPAGGQALHRIHLHVQHALQLLGFPLVRQGDRLWRKYVDPLPPNHQSCESNEE
EDTTHHCLPLIGATVHLRKGLIELEPVHCLRVAHLGAPGQAEKQAQHLQSVVRPHDSAEGEGSPAKSGPGAPRLGHRGKSHLNRWRIGGC

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>27207_27207_3_ERBB3-COX4I2_ERBB3_chr12_56474166_ENST00000411731_COX4I2_chr20_30231206_ENST00000376075_length(amino acids)=199AA_BP=1
MGLRAGEGRGRQRLPARAEPQGDSWGCKSLLPLLLLIVPAGGQALHRIHLHVQHALQLLGFPLVRQGDRLWRKYVDPLPPNHQSCESNEE
EDTTHHCLPLIGATVHLRKGLIELEPVHCLRVAHLGAPGQAEKQAQHLQSVVRPHDSAEGEGSPAKSGPGAPRLGHRGKSHLNRWRIGGC

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>27207_27207_4_ERBB3-COX4I2_ERBB3_chr12_56474166_ENST00000411731_COX4I2_chr20_30231207_ENST00000376075_length(amino acids)=199AA_BP=1
MGLRAGEGRGRQRLPARAEPQGDSWGCKSLLPLLLLIVPAGGQALHRIHLHVQHALQLLGFPLVRQGDRLWRKYVDPLPPNHQSCESNEE
EDTTHHCLPLIGATVHLRKGLIELEPVHCLRVAHLGAPGQAEKQAQHLQSVVRPHDSAEGEGSPAKSGPGAPRLGHRGKSHLNRWRIGGC

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