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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>27726_27726_1_ETV6-LOH12CR1_ETV6_chr12_11905513_ENST00000396373_LOH12CR1_chr12_12588561_ENST00000298571_length(amino acids)=183AA_BP=0
MSETPAQCSIKQERISYTPPESPVPSYASSTPLHVPVPRALRMEEDSIRLPAHLRLLSGQTSPTNAKLEKLDSQQVLQLCLRYQDHLHQC
AEAVAFDQNALVKRIKEMDLSVETLFSFMQERQKRYAKYAEQIQKVNEMSAILRRIQMGIDQTVPLLDRLNSMLPEGERLEPFSMKPDRE

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>27726_27726_2_ETV6-LOH12CR1_ETV6_chr12_11905513_ENST00000396373_LOH12CR1_chr12_12588561_ENST00000314565_length(amino acids)=237AA_BP=1
MDYILSIKKKKKLNKNNSQCRVLQRIPNNSHVPASVITENWLGSFHTGKLHQGKELGKVRFSCQPDSFAPTFREPPASLQTWSDDMTLAP
HVLRVSVSGAPSPRQAGQQLQPELAVGLHAEGLQPLALGQHAVEPVQQGHSLVDAHLYAAEDGGHLVHFLDLLGILGVSFLALLHEAEQS

--------------------------------------------------------------

>27726_27726_3_ETV6-LOH12CR1_ETV6_chr12_11905513_ENST00000396373_LOH12CR1_chr12_12588561_ENST00000542728_length(amino acids)=183AA_BP=0
MSETPAQCSIKQERISYTPPESPVPSYASSTPLHVPVPRALRMEEDSIRLPAHLRLLSGQTSPTNAKLEKLDSQQVLQLCLRYQDHLHQC
AEAVAFDQNALVKRIKEMDLSVETLFSFMQERQKRYAKYAEQIQKVNEMSAILRRIQMGIDQTVPLLDRLNSMLPEGERLEPFSMKPDRE

--------------------------------------------------------------

>27726_27726_4_ETV6-LOH12CR1_ETV6_chr12_11905513_ENST00000396373_LOH12CR1_chr12_12588562_ENST00000298571_length(amino acids)=183AA_BP=0
MSETPAQCSIKQERISYTPPESPVPSYASSTPLHVPVPRALRMEEDSIRLPAHLRLLSGQTSPTNAKLEKLDSQQVLQLCLRYQDHLHQC
AEAVAFDQNALVKRIKEMDLSVETLFSFMQERQKRYAKYAEQIQKVNEMSAILRRIQMGIDQTVPLLDRLNSMLPEGERLEPFSMKPDRE

--------------------------------------------------------------

>27726_27726_5_ETV6-LOH12CR1_ETV6_chr12_11905513_ENST00000396373_LOH12CR1_chr12_12588562_ENST00000314565_length(amino acids)=237AA_BP=1
MDYILSIKKKKKLNKNNSQCRVLQRIPNNSHVPASVITENWLGSFHTGKLHQGKELGKVRFSCQPDSFAPTFREPPASLQTWSDDMTLAP
HVLRVSVSGAPSPRQAGQQLQPELAVGLHAEGLQPLALGQHAVEPVQQGHSLVDAHLYAAEDGGHLVHFLDLLGILGVSFLALLHEAEQS

--------------------------------------------------------------

>27726_27726_6_ETV6-LOH12CR1_ETV6_chr12_11905513_ENST00000396373_LOH12CR1_chr12_12588562_ENST00000542728_length(amino acids)=183AA_BP=0
MSETPAQCSIKQERISYTPPESPVPSYASSTPLHVPVPRALRMEEDSIRLPAHLRLLSGQTSPTNAKLEKLDSQQVLQLCLRYQDHLHQC
AEAVAFDQNALVKRIKEMDLSVETLFSFMQERQKRYAKYAEQIQKVNEMSAILRRIQMGIDQTVPLLDRLNSMLPEGERLEPFSMKPDRE

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