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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>3890_3890_1_ALDH2-TFF3_ALDH2_chr12_112221074_ENST00000261733_TFF3_chr21_43735501_ENST00000291525_length(amino acids)=119AA_BP=86
MSSKVVLYFTTTLATVQYLYYSWVLFLCTVNIMNKQALQTSVPCQPRTGWTAATPMSPPRSATTGAAALTPGSLECLGVSSPCRKQRSPR

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>3890_3890_2_ALDH2-TFF3_ALDH2_chr12_112221074_ENST00000261733_TFF3_chr21_43735501_ENST00000518498_length(amino acids)=119AA_BP=86
MSSKVVLYFTTTLATVQYLYYSWVLFLCTVNIMNKQALQTSVPCQPRTGWTAATPMSPPRSATTGAAALTPGSLECLGVSSPCRKQRSPR

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