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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>40724_40724_1_ITPR3-PPIL1_ITPR3_chr6_33589468_ENST00000374316_PPIL1_chr6_36839648_ENST00000373699_length(amino acids)=276AA_BP=1
MQSQNEFSITCHSMSSRSWFTGAISEELLKRVASLPRRVCLNDLHVVHRAVLGVCFYHSHAIHHSYALTHSAKNGVFAVKPLGGGEGHKE
LAAIGIWPRIGHCENSSPREFQVWMKFIFKLFAIDRCTTSTCPCWVTSLDHEVFDNSVEFCAIVVTSTSQLSKVLTGLWSMLPVQLQHND
SHAQSADEAIDGALGVQGDDVPDVKKAGHFTHGCGPPGPRAWGAPRGAWPSSVRRTEASGERGGVRSHLGSRRSVRPGRAGGHGSQEAAR

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>40724_40724_2_ITPR3-PPIL1_ITPR3_chr6_33589468_ENST00000605930_PPIL1_chr6_36839648_ENST00000373699_length(amino acids)=177AA_BP=30
MSEMSSFLHIGDIVSLYAEGSVNGFISTLGMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYG

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