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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>41706_41706_1_KDM1B-PITPNC1_KDM1B_chr6_18171710_ENST00000297792_PITPNC1_chr17_65574302_ENST00000580974_length(amino acids)=402AA_BP=232
MGLAARLQPSCARGARLRRGARSPGRRAPPRWRSERCLFPETPGTSSAQRLFNVMATPRGRTKKKASFDHSPDSLPLRSSGRQAKKKATE
TTDEDEDGGSEKKYRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPS
PKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKCSFLPKFSIHIETKYEDNKGSNDTIFDNEAKDVEREVC
FIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEW

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>41706_41706_2_KDM1B-PITPNC1_KDM1B_chr6_18171710_ENST00000297792_PITPNC1_chr17_65574302_ENST00000581322_length(amino acids)=466AA_BP=232
MGLAARLQPSCARGARLRRGARSPGRRAPPRWRSERCLFPETPGTSSAQRLFNVMATPRGRTKKKASFDHSPDSLPLRSSGRQAKKKATE
TTDEDEDGGSEKKYRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPS
PKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKCSFLPKFSIHIETKYEDNKGSNDTIFDNEAKDVEREVC
FIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEW
YDMTMDEVREFERATQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKKATLN

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>41706_41706_3_KDM1B-PITPNC1_KDM1B_chr6_18171710_ENST00000388870_PITPNC1_chr17_65574302_ENST00000580974_length(amino acids)=427AA_BP=257
MSAPPTPGHAVTGAEAAAAAAAEKRLGLAARLQPSCARGARLRRGARSPGRRAPPRWRSERCLFPETPGTSSAQRLFNVMATPRGRTKKK
ASFDHSPDSLPLRSSGRQAKKKATETTDEDEDGGSEKKYRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYR
SHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKCSFLPKFSIHIET
KYEDNKGSNDTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKLVTVKFEVWGLQTRVE

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>41706_41706_4_KDM1B-PITPNC1_KDM1B_chr6_18171710_ENST00000388870_PITPNC1_chr17_65574302_ENST00000581322_length(amino acids)=491AA_BP=257
MSAPPTPGHAVTGAEAAAAAAAEKRLGLAARLQPSCARGARLRRGARSPGRRAPPRWRSERCLFPETPGTSSAQRLFNVMATPRGRTKKK
ASFDHSPDSLPLRSSGRQAKKKATETTDEDEDGGSEKKYRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYR
SHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKCSFLPKFSIHIET
KYEDNKGSNDTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKLVTVKFEVWGLQTRVE
QFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERATQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVP

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>41706_41706_5_KDM1B-PITPNC1_KDM1B_chr6_18171710_ENST00000397244_PITPNC1_chr17_65574302_ENST00000580974_length(amino acids)=427AA_BP=257
MSAPPTPGHAVTGAEAAAAAAAEKRLGLAARLQPSCARGARLRRGARSPGRRAPPRWRSERCLFPETPGTSSAQRLFNVMATPRGRTKKK
ASFDHSPDSLPLRSSGRQAKKKATETTDEDEDGGSEKKYRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYR
SHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKCSFLPKFSIHIET
KYEDNKGSNDTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKLVTVKFEVWGLQTRVE

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>41706_41706_6_KDM1B-PITPNC1_KDM1B_chr6_18171710_ENST00000397244_PITPNC1_chr17_65574302_ENST00000581322_length(amino acids)=491AA_BP=257
MSAPPTPGHAVTGAEAAAAAAAEKRLGLAARLQPSCARGARLRRGARSPGRRAPPRWRSERCLFPETPGTSSAQRLFNVMATPRGRTKKK
ASFDHSPDSLPLRSSGRQAKKKATETTDEDEDGGSEKKYRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYR
SHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKCSFLPKFSIHIET
KYEDNKGSNDTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKLVTVKFEVWGLQTRVE
QFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERATQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVP

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