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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>50983_50983_1_MALT1-RTKN2_MALT1_chr18_56367823_ENST00000345724_RTKN2_chr10_63959620_ENST00000315289_length(amino acids)=327AA_BP=217
MSLLGDPLQALPPSAAPTGPLLAPPAGATLNRLREPLLRRLSELLDQAPEGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSL
CLLKLMGEKGCTVTELSDFLQAMEHTEVLQLLSPPGIKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAV
HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKK

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>50983_50983_2_MALT1-RTKN2_MALT1_chr18_56367823_ENST00000345724_RTKN2_chr10_63959620_ENST00000373789_length(amino acids)=430AA_BP=217
MSLLGDPLQALPPSAAPTGPLLAPPAGATLNRLREPLLRRLSELLDQAPEGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSL
CLLKLMGEKGCTVTELSDFLQAMEHTEVLQLLSPPGIKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAV
HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKK
IEETNGQFLIGQHEESLPPPWATLFDGNHQMVIQKKVLYPASEPLHDEKGKKRQAPLPPSDKLPFSLKSQSNTDQLVKDNWGKTSVSQTS

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>50983_50983_3_MALT1-RTKN2_MALT1_chr18_56367823_ENST00000345724_RTKN2_chr10_63959620_ENST00000395265_length(amino acids)=328AA_BP=217
MSLLGDPLQALPPSAAPTGPLLAPPAGATLNRLREPLLRRLSELLDQAPEGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSL
CLLKLMGEKGCTVTELSDFLQAMEHTEVLQLLSPPGIKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAV
HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKK

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>50983_50983_4_MALT1-RTKN2_MALT1_chr18_56367823_ENST00000348428_RTKN2_chr10_63959620_ENST00000315289_length(amino acids)=368AA_BP=258
MPDLFFRPCLRGSEASGRCPGAEARDGAGGSPGSPGSPARAMSLLGDPLQALPPSAAPTGPLLAPPAGATLNRLREPLLRRLSELLDQAP
EGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDFLQAMEHTEVLQLLSPPGIKITVNPESKAVL
AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQSQWKHCCEELMKI
EIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKKIEETNGQFLIGQHEESLPPPWATLFDGNHQMVIQKKNNSNQLHNLQKLP

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>50983_50983_5_MALT1-RTKN2_MALT1_chr18_56367823_ENST00000348428_RTKN2_chr10_63959620_ENST00000373789_length(amino acids)=471AA_BP=258
MPDLFFRPCLRGSEASGRCPGAEARDGAGGSPGSPGSPARAMSLLGDPLQALPPSAAPTGPLLAPPAGATLNRLREPLLRRLSELLDQAP
EGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDFLQAMEHTEVLQLLSPPGIKITVNPESKAVL
AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQSQWKHCCEELMKI
EIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKKIEETNGQFLIGQHEESLPPPWATLFDGNHQMVIQKKVLYPASEPLHDEK
GKKRQAPLPPSDKLPFSLKSQSNTDQLVKDNWGKTSVSQTSSLDTKLSTLMHHLQKPMAAPRKLLPARRNRLSDGEHTDTKTNFEAKPVP

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>50983_50983_6_MALT1-RTKN2_MALT1_chr18_56367823_ENST00000348428_RTKN2_chr10_63959620_ENST00000395265_length(amino acids)=368AA_BP=258
MPDLFFRPCLRGSEASGRCPGAEARDGAGGSPGSPGSPARAMSLLGDPLQALPPSAAPTGPLLAPPAGATLNRLREPLLRRLSELLDQAP
EGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDFLQAMEHTEVLQLLSPPGIKITVNPESKAVL
AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQSQWKHCCEELMKI
EIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKKIEETNGQFLIGQHEESLPPPWATLFDGNHQMVIQKKNNSNQLHNLQKLP

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