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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>55426_55426_1_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000308259_HMGA2_chr12_66345162_ENST00000541363_length(amino acids)=127AA_BP=103
MPLFFASRFVGEDITVMSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDP

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>55426_55426_2_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000308259_HMGA2_chr12_66345163_ENST00000541363_length(amino acids)=127AA_BP=103
MPLFFASRFVGEDITVMSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDP

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>55426_55426_3_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000355192_HMGA2_chr12_66345162_ENST00000541363_length(amino acids)=123AA_BP=99
MPGLSMSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYK

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>55426_55426_4_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000355192_HMGA2_chr12_66345163_ENST00000541363_length(amino acids)=123AA_BP=99
MPGLSMSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYK

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>55426_55426_5_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000535664_HMGA2_chr12_66345162_ENST00000541363_length(amino acids)=127AA_BP=103
MPLFFASRFVGEDITVMSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDP

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>55426_55426_6_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000535664_HMGA2_chr12_66345163_ENST00000541363_length(amino acids)=127AA_BP=103
MPLFFASRFVGEDITVMSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDP

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>55426_55426_7_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000540804_HMGA2_chr12_66345162_ENST00000541363_length(amino acids)=123AA_BP=99
MPGLSMSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYK

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>55426_55426_8_MSRB3-HMGA2_MSRB3_chr12_65762806_ENST00000540804_HMGA2_chr12_66345163_ENST00000541363_length(amino acids)=123AA_BP=99
MPGLSMSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYK

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