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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>56138_56138_1_MXI1-KLK3_MXI1_chr10_112046264_ENST00000239007_KLK3_chr19_51358171_ENST00000326003_length(amino acids)=330AA_BP=89
MHFDVMCSLCLSNSKVPLWPSPLPWEGLLETLPLAVWTLYTLNNLTTLNYLKKKKKPQAYHLHPESCVTMWVPVVFLTLSVTWIGAAPLI
LSRIVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFL
RPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGR

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>56138_56138_2_MXI1-KLK3_MXI1_chr10_112046264_ENST00000361248_KLK3_chr19_51358171_ENST00000326003_length(amino acids)=330AA_BP=89
MHFDVMCSLCLSNSKVPLWPSPLPWEGLLETLPLAVWTLYTLNNLTTLNYLKKKKKPQAYHLHPESCVTMWVPVVFLTLSVTWIGAAPLI
LSRIVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFL
RPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGR

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>56138_56138_3_MXI1-KLK3_MXI1_chr10_112046264_ENST00000485566_KLK3_chr19_51358171_ENST00000326003_length(amino acids)=330AA_BP=89
MHFDVMCSLCLSNSKVPLWPSPLPWEGLLETLPLAVWTLYTLNNLTTLNYLKKKKKPQAYHLHPESCVTMWVPVVFLTLSVTWIGAAPLI
LSRIVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFL
RPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGR

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