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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>60712_60712_1_NTRK3-PEAK1_NTRK3_chr15_88726649_ENST00000540489_PEAK1_chr15_77407661_ENST00000560626_length(amino acids)=475AA_BP=88
MPAAGRWEPLPPPGRAGFREQQWERQYQHHGHLKEYHFHTHRELAQSSHAQRRGHGALHRTSKADHQELRTSEHSAQSLCQEPPFALYIC
KSKAKESQQYYHSLAVRQSLAVHFNIQQDCGHFLAEVPNRLLPWEDPDDPEKDEDDMEETEEDAKGETDGKNPKPCSEAASSQKENQGVM
SKKQRSHVVVITREVPCLTVADFVRDSLAQHGKSPDLYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVHYQPGGTAQGFGPAEP
SPTSSYPTRLIVSNFSQAKQKSHLVDPEILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEREYTRADLPRIPFR
SPYSRGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQTFTACPSLVQRNTLLQNWLDIKRTLLMIKFAEKSLDREGGISLED

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>60712_60712_2_NTRK3-PEAK1_NTRK3_chr15_88726649_ENST00000557856_PEAK1_chr15_77407661_ENST00000560626_length(amino acids)=475AA_BP=88
MPAAGRWEPLPPPGRAGFREQQWERQYQHHGHLKEYHFHTHRELAQSSHAQRRGHGALHRTSKADHQELRTSEHSAQSLCQEPPFALYIC
KSKAKESQQYYHSLAVRQSLAVHFNIQQDCGHFLAEVPNRLLPWEDPDDPEKDEDDMEETEEDAKGETDGKNPKPCSEAASSQKENQGVM
SKKQRSHVVVITREVPCLTVADFVRDSLAQHGKSPDLYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVHYQPGGTAQGFGPAEP
SPTSSYPTRLIVSNFSQAKQKSHLVDPEILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEREYTRADLPRIPFR
SPYSRGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQTFTACPSLVQRNTLLQNWLDIKRTLLMIKFAEKSLDREGGISLED

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>60712_60712_3_NTRK3-PEAK1_NTRK3_chr15_88726649_ENST00000558676_PEAK1_chr15_77407661_ENST00000560626_length(amino acids)=475AA_BP=88
MPAAGRWEPLPPPGRAGFREQQWERQYQHHGHLKEYHFHTHRELAQSSHAQRRGHGALHRTSKADHQELRTSEHSAQSLCQEPPFALYIC
KSKAKESQQYYHSLAVRQSLAVHFNIQQDCGHFLAEVPNRLLPWEDPDDPEKDEDDMEETEEDAKGETDGKNPKPCSEAASSQKENQGVM
SKKQRSHVVVITREVPCLTVADFVRDSLAQHGKSPDLYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVHYQPGGTAQGFGPAEP
SPTSSYPTRLIVSNFSQAKQKSHLVDPEILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEREYTRADLPRIPFR
SPYSRGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQTFTACPSLVQRNTLLQNWLDIKRTLLMIKFAEKSLDREGGISLED

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