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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>65876_65876_1_PLA2G6-EEF1D_PLA2G6_chr22_38539112_ENST00000332509_EEF1D_chr8_144662376_ENST00000419152_length(amino acids)=326AA_BP=248
MGVRSPTSSALRTPKSPPDPPLDIPRVSDSETEGEDGGASPPAPQKMQFFGRLVNTFSGVTNLFSNPFRVKEVAVADYTSSDRVREEGQL
ILFQNTPNRTWDCVLVNPRNSQSGFRLFQLELEADALVNFHQYSSQLLPFYESSPQVLHTEVLQHLTDLIRNHPSWSVAHLAVELGIREC
FHHSRIISCANCAENEEGCTPLHLACRKGDGEILVELVQYCHTQMDVTDYKGETVFHYAVQGDNSQVLQWDDETDMAQLEACVRSIQLDG

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>65876_65876_2_PLA2G6-EEF1D_PLA2G6_chr22_38539112_ENST00000335539_EEF1D_chr8_144662376_ENST00000419152_length(amino acids)=305AA_BP=227
MDIPRVSDSETEGEDGGASPPAPQKMQFFGRLVNTFSGVTNLFSNPFRVKEVAVADYTSSDRVREEGQLILFQNTPNRTWDCVLVNPRNS
QSGFRLFQLELEADALVNFHQYSSQLLPFYESSPQVLHTEVLQHLTDLIRNHPSWSVAHLAVELGIRECFHHSRIISCANCAENEEGCTP
LHLACRKGDGEILVELVQYCHTQMDVTDYKGETVFHYAVQGDNSQVLQWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQ

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>65876_65876_3_PLA2G6-EEF1D_PLA2G6_chr22_38539112_ENST00000402064_EEF1D_chr8_144662376_ENST00000419152_length(amino acids)=280AA_BP=202
MQFFGRLVNTFSGVTNLFSNPFRVKEVAVADYTSSDRVREEGQLILFQNTPNRTWDCVLVNPRNSQSGFRLFQLELEADALVNFHQYSSQ
LLPFYESSPQVLHTEVLQHLTDLIRNHPSWSVAHLAVELGIRECFHHSRIISCANCAENEEGCTPLHLACRKGDGEILVELVQYCHTQMD
VTDYKGETVFHYAVQGDNSQVLQWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQ

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