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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>66874_66874_1_POLA1-PGK1_POLA1_chrX_24717666_ENST00000379059_PGK1_chrX_77378692_ENST00000373316_length(amino acids)=215AA_BP=37
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKF
DENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAK

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>66874_66874_2_POLA1-PGK1_POLA1_chrX_24717666_ENST00000379059_PGK1_chrX_77378692_ENST00000442431_length(amino acids)=218AA_BP=1
MLRASTPGRTLPSRSSKLAPPPVLTWLTLSSVFHLAQQVAVSPPPMMVMQPLEVAFTTSSMRALVPRAKASHSNTPTGPFHTICLARVTA
SAYFLLLSGPQSKPIQPAGMPEATVAWPVLAFSSNLSAVTKSTGKVIFTPFFSALDIRSLTILAPSSSNREVPISYLYFSPALAFFSLSR

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>66874_66874_3_POLA1-PGK1_POLA1_chrX_24717666_ENST00000379059_PGK1_chrX_77378692_ENST00000537456_length(amino acids)=218AA_BP=1
MLRASTPGRTLPSRSSKLAPPPVLTWLTLSSVFHLAQQVAVSPPPMMVMQPLEVAFTTSSMRALVPRAKASHSNTPTGPFHTICLARVTA
SAYFLLLSGPQSKPIQPAGMPEATVAWPVLAFSSNLSAVTKSTGKVIFTPFFSALDIRSLTILAPSSSNREVPISYLYFSPALAFFSLSR

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>66874_66874_4_POLA1-PGK1_POLA1_chrX_24717666_ENST00000379068_PGK1_chrX_77378692_ENST00000373316_length(amino acids)=221AA_BP=43
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDF
VTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDT

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>66874_66874_5_POLA1-PGK1_POLA1_chrX_24717666_ENST00000379068_PGK1_chrX_77378692_ENST00000442431_length(amino acids)=234AA_BP=1
MLRASTPGRTLPSRSSKLAPPPVLTWLTLSSVFHLAQQVAVSPPPMMVMQPLEVAFTTSSMRALVPRAKASHSNTPTGPFHTICLARVTA
SAYFLLLSGPQSKPIQPAGMPEATVAWPVLAFSSNLSAVTKSTGKVIFTPFFSALDIRSLTILAPSSSNREVPISYLYFSPALAFFSLSR

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>66874_66874_6_POLA1-PGK1_POLA1_chrX_24717666_ENST00000379068_PGK1_chrX_77378692_ENST00000537456_length(amino acids)=234AA_BP=1
MLRASTPGRTLPSRSSKLAPPPVLTWLTLSSVFHLAQQVAVSPPPMMVMQPLEVAFTTSSMRALVPRAKASHSNTPTGPFHTICLARVTA
SAYFLLLSGPQSKPIQPAGMPEATVAWPVLAFSSNLSAVTKSTGKVIFTPFFSALDIRSLTILAPSSSNREVPISYLYFSPALAFFSLSR

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