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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>72493_72493_1_RASSF3-KRT6B_RASSF3_chr12_65004523_ENST00000336061_KRT6B_chr12_52844404_ENST00000252252_length(amino acids)=435AA_BP=48
LHKDCPGLRDGTGSMSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQVRFLEQQNKVLDTKWTLLQEQGTKTVRQNLEPLFEQYIN
NLRRQLDNIVGERGRLDSELRNMQDLVEDLKNKYEDEINKRTAAENEFVTLKKDVDAAYMNKVELQAKADTLTDEINFLRALYDAELSQM
QTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQTKYEELQITAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVK
KQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGQVNISVV

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>72493_72493_2_RASSF3-KRT6B_RASSF3_chr12_65004523_ENST00000542104_KRT6B_chr12_52844404_ENST00000252252_length(amino acids)=457AA_BP=70
MPGAARREPRGAGGRRTPSLAACAPGRPPARDGTGSMSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQVRFLEQQNKVLDTKWTL
LQEQGTKTVRQNLEPLFEQYINNLRRQLDNIVGERGRLDSELRNMQDLVEDLKNKYEDEINKRTAAENEFVTLKKDVDAAYMNKVELQAK
ADTLTDEINFLRALYDAELSQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQTKYEELQITAGRHGDDLRNT
KQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARLLKEYQELMNVKLALDVEIATYRK
LLEGEECRLNGEGVGQVNISVVQSTVSSGYGGASGVGSGLGLGGGSSYSYGSGLGVGGGFSSSSGRATGGGLSSVGGGSSTIKYTTTSSS

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