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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>84016_84016_1_SMC5-CDKN2A_SMC5_chr9_72879361_ENST00000361138_CDKN2A_chr9_21971207_ENST00000304494_length(amino acids)=232AA_BP=2
MSEGPSAASMRAWLLPLVPPAAARRYRATSRWPSSSARSTGRRPQASRTSSRAPARCSTTSVSRKPSRAASCTGRVRVAGSAQLGSAPWS
SSSSATRALPIIMTLSARPMKAGFPAKPRQMAHTMLDFPVPLAPTIIFKWGPGDTSQISYVRKFSIEMRTIEPSTKGPDDCNSGSCGAEF

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>84016_84016_2_SMC5-CDKN2A_SMC5_chr9_72879361_ENST00000361138_CDKN2A_chr9_21971207_ENST00000579122_length(amino acids)=205AA_BP=117
MWDAEEARMATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGAN
GTGKSSIVCAICLGLAGKPAFMGRADKVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL

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