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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>99300_99300_1_WIPI1-AMZ2_WIPI1_chr17_66440634_ENST00000262139_AMZ2_chr17_66246935_ENST00000359904_length(amino acids)=409AA_BP=143
MEAEAADAPPGGVESALSCFSFNQDCTSLATGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKK
GTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGSLGNTRIISEEYIKWLTGYCKAYFYGLRVKLLEPVP
VSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGITMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKL
KKTSSSDYSIFDNYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAVGFSIVERYKAL

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>99300_99300_2_WIPI1-AMZ2_WIPI1_chr17_66440634_ENST00000262139_AMZ2_chr17_66246935_ENST00000392720_length(amino acids)=409AA_BP=143
MEAEAADAPPGGVESALSCFSFNQDCTSLATGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKK
GTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGSLGNTRIISEEYIKWLTGYCKAYFYGLRVKLLEPVP
VSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGITMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKL
KKTSSSDYSIFDNYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAVGFSIVERYKAL

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>99300_99300_3_WIPI1-AMZ2_WIPI1_chr17_66440634_ENST00000262139_AMZ2_chr17_66246935_ENST00000580753_length(amino acids)=409AA_BP=143
MEAEAADAPPGGVESALSCFSFNQDCTSLATGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKK
GTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGSLGNTRIISEEYIKWLTGYCKAYFYGLRVKLLEPVP
VSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGITMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKL
KKTSSSDYSIFDNYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAVGFSIVERYKAL

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>99300_99300_4_WIPI1-AMZ2_WIPI1_chr17_66440634_ENST00000546360_AMZ2_chr17_66246935_ENST00000359904_length(amino acids)=390AA_BP=124
MRLPGPSPRWRPRPRTLPRAGLSRRSAASLSTRTAHEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLN
RQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGSLGNTRIISEEYIKWLTGYCKAYFYGLRVKLLEPVPVSVTRCSFRVNENTHNLQI
HAGDILKFLKKKKPEDAFCVVGITMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFDNYYIPEI
TSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHS

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>99300_99300_5_WIPI1-AMZ2_WIPI1_chr17_66440634_ENST00000546360_AMZ2_chr17_66246935_ENST00000392720_length(amino acids)=390AA_BP=124
MRLPGPSPRWRPRPRTLPRAGLSRRSAASLSTRTAHEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLN
RQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGSLGNTRIISEEYIKWLTGYCKAYFYGLRVKLLEPVPVSVTRCSFRVNENTHNLQI
HAGDILKFLKKKKPEDAFCVVGITMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFDNYYIPEI
TSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHS

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>99300_99300_6_WIPI1-AMZ2_WIPI1_chr17_66440634_ENST00000546360_AMZ2_chr17_66246935_ENST00000580753_length(amino acids)=390AA_BP=124
MRLPGPSPRWRPRPRTLPRAGLSRRSAASLSTRTAHEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLN
RQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGSLGNTRIISEEYIKWLTGYCKAYFYGLRVKLLEPVPVSVTRCSFRVNENTHNLQI
HAGDILKFLKKKKPEDAFCVVGITMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFDNYYIPEI
TSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHS

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