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Center for Computational Systems Medicine
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Kinase Fusion Gene Summary

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Kinase Fusion Gene Sample Information

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Kinase Fusion ORF Analysis

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Kinase Fusion Amino Acid Sequences

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Multiple Sequence Alignment of All Fusion Protein Isoforms

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Kinase Fusion Protein Functional Features

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Kinase Fusion Protein Structures

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Comparison of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

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pLDDT Scores and Difference Analysis of pLDDT Scores Between the Active Sites (Best) and Non-Active Sites.

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Ramachandran Plot of Kinase Fusion Protein Structure

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Potential Active Site Information

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Virtual Screening Results

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Kinase-Substrate Information

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Related Drugs with This Kinase Fusion Protein

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Related Disease with This Kinase Fusion Protein

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Clinical Trials of the Found Drugs/Small Molecules

Kinase Fusion Gene:ACVRL1_SLC43A2

Kinase Fusion Protein Summary

check button Kinase Fusion gene summary
Kinase Fusion partner gene informationKinase Fusion gene name: ACVRL1_SLC43A2
KinaseFusionDB ID: KFG163
FusionGDB2.0 ID: KFG163
HgeneTgene
Gene symbol

ACVRL1

SLC43A2

Gene ID

94

124935

Gene nameactivin A receptor like type 1solute carrier family 43 member 2
SynonymsACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-ILAT4
Cytomap

12q13.13

17p13.3

Type of geneprotein-codingprotein-coding
Descriptionserine/threonine-protein kinase receptor R3TGF-B superfamily receptor type Iactivin A receptor type II-like 1activin A receptor type ILactivin A receptor, type II-like kinase 1large neutral amino acids transporter small subunit 4L-type amino acid transporter 4solute carrier family 43 (amino acid system L transporter), member 2
Modification date2024040320240411
UniProtAcc

P37023

Q8N370

Ensembl transtripts involved in fusion geneENST idsENST00000388922, ENST00000419526, 
ENST00000550683, ENST00000550084, 
ENST00000574274, ENST00000301335, 
ENST00000382147, ENST00000412517, 
ENST00000571650, 
Context (manual curation of fusion genes in KinaseFusionDB)

PubMed: ACVRL1 [Title/Abstract] AND SLC43A2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)ACVRL1(52312899)-SLC43A2(1481617), # samples:1
check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneACVRL1

GO:0007165

signal transduction

15702480

HgeneACVRL1

GO:0007179

transforming growth factor beta receptor signaling pathway

15702480

HgeneACVRL1

GO:0010596

negative regulation of endothelial cell migration

17068149

HgeneACVRL1

GO:0030308

negative regulation of cell growth

17068149

HgeneACVRL1

GO:0030509

BMP signaling pathway

12065756|22718755

HgeneACVRL1

GO:0030513

positive regulation of BMP signaling pathway

17068149

HgeneACVRL1

GO:0045893

positive regulation of DNA-templated transcription

12393874

HgeneACVRL1

GO:0045944

positive regulation of transcription by RNA polymerase II

19366699

HgeneACVRL1

GO:0071560

cellular response to transforming growth factor beta stimulus

19494318

TgeneSLC43A2

GO:0015818

isoleucine transport

15659399

TgeneSLC43A2

GO:0015820

L-leucine transport

15659399

TgeneSLC43A2

GO:0015821

methionine transport

15659399

TgeneSLC43A2

GO:0015823

phenylalanine transport

30379325

TgeneSLC43A2

GO:0051956

negative regulation of amino acid transport

26305885

TgeneSLC43A2

GO:1905533

negative regulation of L-leucine import across plasma membrane

26305885


check buttonKinase Fusion gene breakpoints across ACVRL1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonKinase Fusion gene breakpoints across SLC43A2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Kinase Fusion Gene Sample Information

check buttonKinase Fusion gene information.
check button Kinase Fusion gene information from four resources (ChiTars 5.0, ChimerDB 4.0, COSMIC, and CCLE)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceSampleHgeneHchrHbpTgeneTchrTbp
ChimerDB4TCGA-D7-A4Z0-01AACVRL1chr12

52312899

SLC43A2chr17

1481617



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Kinase Fusion ORF Analysis


check buttonKinase Fusion information from ORFfinder translation from full-length transcript sequence from KinaseFusionDB.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(amino acids)
ENST00000388922ENST00000301335ACVRL1chr1252312899SLC43A2chr1714816178357649

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Kinase Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from KinaseFusionDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>Henst_Tenst_Hgene_Hchr_Hbp_Tgene_Tchr_Tbp_length(fusion AA)_AAseq

>ENST00000388922_ENST00000301335_ACVRL1_chr12_52312899_SLC43A2_chr17_1481617_length(amino acids)=649
MLQPPSQSREAAAPAAPSEPLPGSSPVRGRARTPARRPALAVQLRPRGGGEVAPVRRRLAPRHPQSGPRGTMTLGSPRKGLLMLLMALVT
QGDPVKPSRGPLVTCTCESPHCKGPTCRGAWCTVVLVREEGRHPQEHRGCGNLHRELCRGRPTEFVNHYCCDSHLCNHNVSLVLEATQPP
SEQPGTDGQLALILGPVLALLALVALGVLGLWHVRRRQEKQRGLHSELGESSLILKASEQGDSMLGDLLDSDCTTGSGSGLPFLVQRTVA
RQVALVECVGKGRYGEVWRGLWHGESVAVKIFSSRDEQSWFRETEIYNTVLLRHDNILGFIASDMTSRNSSTQLWLITHYHEHGSLYDFL
QRQTLEPHLALRLAVSAACGLAHLHVEIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLAVMHSQGSDYLDIGNNPRVGTKRYMAPE
VLDEQIRTDCFESYKWTDIWAFGLVLWEIARRTIVNGIVEDYRPPFYDVVPNDPSFEDMKKVVCVDQQTPTIPNRLAADPILSFILHTIV
RGFIHSAVGGLYAAVYPSTQFGSLTGLQSLISALFALLQQPLFLAMMGPLQGDPLWVNVGLLLLSLLGFCLPLYLICYRRQLERQLQQRQ

--------------------------------------------------------------

Multiple Sequence Alignment of All Fusion Protein Isoforms



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Kinase Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:52312899/chr17:1481617)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ACVRL1

P37023

SLC43A2

Q8N370

FUNCTION: Type I receptor for TGF-beta family ligands BMP9/GDF2 and BMP10 and important regulator of normal blood vessel development. On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases. Type II receptors phosphorylate and activate type I receptors which autophosphorylate, then bind and activate SMAD transcriptional regulators. May bind activin as well. {ECO:0000269|PubMed:22718755, ECO:0000269|PubMed:22799562, ECO:0000269|PubMed:26176610}.FUNCTION: Uniporter that mediates the transport of the stereospecific L-phenylalanine, L-methionine and L-branched-chain amino acids, between the extracellular space and the cytoplasm and may control the transepithelial (re)absorption of neutral amino acid in kidney and small intestine (PubMed:30379325, PubMed:15659399). The transport activity is mediated through facilitated diffusion and is sodium ions-, chloride ions- and pH-independent (PubMed:15659399). {ECO:0000269|PubMed:15659399, ECO:0000269|PubMed:30379325}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.

check button - Retained domain in the 5'-partner of fusion protein (protein functional feature from UniProt).
459
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote
HgeneACVRL152312899SLC43A21481617ENST00000388922910172_2011504DomainNote=GS;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00585


check button - Retained domain in the 3'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


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Kinase Fusion Protein Structures

check button CIF files of the predicted kinase fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Kinase Fusion protein CIF link (fusion AA seq ID in KinaseFusionDB)HenstTenstHgeneHchrHbpTgeneTchrTbpAA seqLen(AA seq)
PDB file >>>19_ACVRL1_SLC43A2ENST00000388922ENST00000301335ACVRL1chr1252312899SLC43A2chr171481617
MLQPPSQSREAAAPAAPSEPLPGSSPVRGRARTPARRPALAVQLRPRGGGEVAPVRRRLAPRHPQSGPRGTMTLGSPRKGLLMLLMALVT
QGDPVKPSRGPLVTCTCESPHCKGPTCRGAWCTVVLVREEGRHPQEHRGCGNLHRELCRGRPTEFVNHYCCDSHLCNHNVSLVLEATQPP
SEQPGTDGQLALILGPVLALLALVALGVLGLWHVRRRQEKQRGLHSELGESSLILKASEQGDSMLGDLLDSDCTTGSGSGLPFLVQRTVA
RQVALVECVGKGRYGEVWRGLWHGESVAVKIFSSRDEQSWFRETEIYNTVLLRHDNILGFIASDMTSRNSSTQLWLITHYHEHGSLYDFL
QRQTLEPHLALRLAVSAACGLAHLHVEIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLAVMHSQGSDYLDIGNNPRVGTKRYMAPE
VLDEQIRTDCFESYKWTDIWAFGLVLWEIARRTIVNGIVEDYRPPFYDVVPNDPSFEDMKKVVCVDQQTPTIPNRLAADPILSFILHTIV
RGFIHSAVGGLYAAVYPSTQFGSLTGLQSLISALFALLQQPLFLAMMGPLQGDPLWVNVGLLLLSLLGFCLPLYLICYRRQLERQLQQRQ
649
3D view using mol* of 19_ACVRL1_SLC43A2
PDB file >>>HKFP_22_ACVRL1_SLC43A2ENST00000388922ENST00000301335ACVRL1chr1252312899SLC43A2chr171481617
MLQPPSQSREAAAPAAPSEPLPGSSPVRGRARTPARRPALAVQLRPRGGGEVAPVRRRLAPRHPQSGPRGTMTLGSPRKGLLMLLMALVT
QGDPVKPSRGPLVTCTCESPHCKGPTCRGAWCTVVLVREEGRHPQEHRGCGNLHRELCRGRPTEFVNHYCCDSHLCNHNVSLVLEATQPP
SEQPGTDGQLALILGPVLALLALVALGVLGLWHVRRRQEKQRGLHSELGESSLILKASEQGDSMLGDLLDSDCTTGSGSGLPFLVQRTVA
RQVALVECVGKGRYGEVWRGLWHGESVAVKIFSSRDEQSWFRETEIYNTVLLRHDNILGFIASDMTSRNSSTQLWLITHYHEHGSLYDFL
QRQTLEPHLALRLAVSAACGLAHLHVEIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLAVMHSQGSDYLDIGNNPRVGTKRYMAPE
VLDEQIRTDCFESYKWTDIWAFGLVLWEIARRTIVNGIVEDYRPPFYDVVPNDPSFEDMKKVVCVDQQTPTIPNRLAADPILSFILHTIV
RGFIHSAVGGLYAAVYPSTQFGSLTGLQSLISALFALLQQPLFLAMMGPLQGDPLWVNVGLLLLSLLGFCLPLYLICYRRQLERQLQQRQ
649_ACVRL1_SLC43A2


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Comparison of Fusion Protein Isoforms

check button Superimpose the 3D Structures Among All Fusion Protein Isoforms
* Download the pdb file and open it from the molstar online viewer.

check button Comparison of the Secondary Structures of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

ACVRL1_SLC43A2 does not have any known PDB structures.

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pLDDT score distribution

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
* The blue color at the bottom marks the best active site residues.
19_ACVRL1_SLC43A2.png
all structure sitemap plddt 19_ACVRL1_SLC43A2.png
19_ACVRL1_SLC43A2.png
all structure sitemap plddt2 19_ACVRL1_SLC43A2.png


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Potential Active Site Information


check button The potential binding sites of these fusion proteins were identified using SiteMap, a module of the Schrodinger suite.
Kinase Fusion AA seq ID in KinaseFusionDBSite scoreSizeDscoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues

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Ramachandran Plot of Kinase Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.

19_ACVRL1_SLC43A2_ramachandran.png
all structure ACVRL1-SLC43A2

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Virtual Screening Results


check button Distribution of the average docking score across all approved kinase inhibitors.
Distribution of the number of occurrence across all approved kinase inhibitors.
5'-kinase fusion protein case
all structure ACVRL1-SLC43A2
3'-kinase fusion protein case

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check button Drug information from DrugBank of the top 20 interacting small molecules.
* The detailed information of individual kinase inhibitors are available in the download page.
Fusion gene name infoDrugDocking scoreGlide g scoreGlide energy
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Larotrectinib-9.28668-9.28668-51.2265
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Larotrectinib-8.71345-8.71345-52.7833
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Midostaurin-8.11995-8.11995-45.8813
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Gilteritinib-8.07576-8.102160000000001-50.6383
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Gilteritinib-8.07576-8.102160000000001-50.6383
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Netarsudil-7.9867300000000006-7.99783-50.9982
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Netarsudil-7.9867300000000006-7.99783-50.9982
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Ruxolitinib-7.66763-7.66763-36.4649
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Lapatinib-7.6249-7.7137-67.7551
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Pacritinib-7.584789999999999-7.58989-49.0037
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Lapatinib-7.504160000000001-7.592960000000001-67.3815
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Acalabrutinib-7.392519999999999-7.406619999999999-49.9276
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Acalabrutinib-7.392519999999999-7.406619999999999-49.9276
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Afatinib-7.09738-7.27968-46.0557
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Afatinib-7.09738-7.27968-46.0557
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Upadacitinib-7.09657-7.097569999999999-36.842
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Afatinib-7.09598-7.27968-46.0557
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Pexidartinib-6.97536-7.67616-45.3733
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Pexidartinib-6.97536-7.67616-45.3733
19_ACVRL1_SLC43A2-DOCK_HTVS_1-001Neratinib-6.97352-7.15942-62.8231

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Kinase-Substrate Information of ACVRL1_SLC43A2


check button Phosphorylation target of the kinase
(phosphosite, 03-17-2024)
KinaseKinase UniProt AccKinase speciesSubstrateSubstrate UniProt AccSubstrate phosphorylated residuesSubstrate phosphorylated sites (+/-7AA)Domain
ACVRL1P37023humanENGP17813S646StNHSIGsTQstPCS
ACVRL1P37023humanENGP17813T640AssESSStNHSIGsT
ACVRL1P37023humanENGP17813T654TQstPCStSSMA___
ACVRL1P37023humanENGP17813S649HSIGsTQstPCStSS


check button Biological Network Integration of This Kinase and Substrates
(GeneMANIA website)

check button Enriched GO biological processes of the phosphorylation target genes of the kinase
KinaseGOIDGO termP.adjust
ACVRL1IDDescription0.00e+00
ACVRL1GO:0035907dorsal aorta development8.94e-03
ACVRL1GO:0062042regulation of cardiac epithelial to mesenchymal transition8.94e-03
ACVRL1GO:0031953negative regulation of protein autophosphorylation8.94e-03
ACVRL1GO:0097084vascular associated smooth muscle cell development8.94e-03
ACVRL1GO:0036302atrioventricular canal development8.94e-03
ACVRL1GO:0070278extracellular matrix constituent secretion8.94e-03
ACVRL1GO:1905065positive regulation of vascular associated smooth muscle cell differentiation8.94e-03
ACVRL1GO:0003222ventricular trabecula myocardium morphogenesis8.94e-03
ACVRL1GO:0003198epithelial to mesenchymal transition involved in endocardial cushion formation8.94e-03
ACVRL1GO:0060841venous blood vessel development8.94e-03
ACVRL1GO:0051152positive regulation of smooth muscle cell differentiation8.94e-03
ACVRL1GO:0060973cell migration involved in heart development8.94e-03
ACVRL1GO:0003228atrial cardiac muscle tissue development8.94e-03
ACVRL1GO:0003148outflow tract septum morphogenesis8.94e-03
ACVRL1GO:1905063regulation of vascular associated smooth muscle cell differentiation8.94e-03
ACVRL1GO:0032967positive regulation of collagen biosynthetic process8.94e-03
ACVRL1GO:0010714positive regulation of collagen metabolic process8.94e-03
ACVRL1GO:0048745smooth muscle tissue development8.94e-03
ACVRL1GO:0003272endocardial cushion formation8.94e-03
ACVRL1GO:0003209cardiac atrium morphogenesis8.94e-03
ACVRL1GO:0061384heart trabecula morphogenesis8.94e-03
ACVRL1GO:0060317cardiac epithelial to mesenchymal transition8.94e-03
ACVRL1GO:0001569branching involved in blood vessel morphogenesis8.94e-03
ACVRL1GO:0003230cardiac atrium development8.94e-03
ACVRL1GO:0032965regulation of collagen biosynthetic process8.94e-03
ACVRL1GO:0035909aorta morphogenesis8.94e-03
ACVRL1GO:0035886vascular associated smooth muscle cell differentiation8.94e-03
ACVRL1GO:0003203endocardial cushion morphogenesis8.94e-03
ACVRL1GO:0031952regulation of protein autophosphorylation8.94e-03
ACVRL1GO:0030513positive regulation of BMP signaling pathway8.94e-03
ACVRL1GO:0010712regulation of collagen metabolic process8.94e-03
ACVRL1GO:0051150regulation of smooth muscle cell differentiation8.94e-03
ACVRL1GO:0055010ventricular cardiac muscle tissue morphogenesis8.94e-03
ACVRL1GO:0061383trabecula morphogenesis8.94e-03
ACVRL1GO:0032964collagen biosynthetic process8.94e-03
ACVRL1GO:0003197endocardial cushion development9.42e-03
ACVRL1GO:0072132mesenchyme morphogenesis9.86e-03
ACVRL1GO:0003229ventricular cardiac muscle tissue development9.86e-03
ACVRL1GO:0010718positive regulation of epithelial to mesenchymal transition9.86e-03
ACVRL1GO:0055008cardiac muscle tissue morphogenesis9.94e-03
ACVRL1GO:0001947heart looping9.99e-03
ACVRL1GO:0035904aorta development9.99e-03
ACVRL1GO:0061371determination of heart left/right asymmetry9.99e-03
ACVRL1GO:0003143embryonic heart tube morphogenesis9.99e-03
ACVRL1GO:0003208cardiac ventricle morphogenesis9.99e-03
ACVRL1GO:0060411cardiac septum morphogenesis9.99e-03
ACVRL1GO:0071260cellular response to mechanical stimulus9.99e-03
ACVRL1GO:0060415muscle tissue morphogenesis1.00e-02
ACVRL1GO:0051145smooth muscle cell differentiation1.00e-02

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Related Drugs to ACVRL1_SLC43A2


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

check button Distribution of the number of studies mentioning ACVRL1-SLC43A2 and kinase inhibitors the PubMed Abstract (04-01-2024)

Fusion gene - drug pair 1Fusion gene - drug pair 2PMIDPublication dateDOIStudy title

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Related Diseases to ACVRL1_SLC43A2


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Related diseases from the literature mentioned this fusion gene and drug.
(PubMed, 04-01-2024)
MeSH IDMeSH term

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource


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Clinical Trials of the Found Drugs/Small Molecules


check button Statistics of the Clinical Trials of the Found Kinase Inibitors from clinicaltrials.gov (06-17-2024)

check button Clinical Trials from clinicaltrials.gov (06-17-2024)

Fusion GeneKinase InhibitorNCT IDStudy StatusPhasesDisease# EnrolmentDate