UTHEALTH HOME    ABOUT SBMI    A-Z    WEBMAIL    INSIDE THE UNIVERSITY
FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Terms of Use

Center for Computational Systems Medicine
leaf

Kinase Fusion Gene Summary

leaf

Kinase Fusion Gene Sample Information

leaf

Kinase Fusion ORF Analysis

leaf

Kinase Fusion Amino Acid Sequences

leaf

Multiple Sequence Alignment of All Fusion Protein Isoforms

leaf

Kinase Fusion Protein Functional Features

leaf

Kinase Fusion Protein Structures

leaf

Comparison of Fusion Protein Isoforms

leaf

Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

leaf

pLDDT Scores and Difference Analysis of pLDDT Scores Between the Active Sites (Best) and Non-Active Sites.

leaf

Ramachandran Plot of Kinase Fusion Protein Structure

leaf

Potential Active Site Information

leaf

Virtual Screening Results

leaf

Kinase-Substrate Information

leaf

Related Drugs with This Kinase Fusion Protein

leaf

Related Disease with This Kinase Fusion Protein

leaf

Clinical Trials of the Found Drugs/Small Molecules

Kinase Fusion Gene:HNRNPUL1_BRSK1

Kinase Fusion Protein Summary

check button Kinase Fusion gene summary
Kinase Fusion partner gene informationKinase Fusion gene name: HNRNPUL1_BRSK1
KinaseFusionDB ID: KFG2739
FusionGDB2.0 ID: KFG2739
HgeneTgene
Gene symbol

HNRNPUL1

BRSK1

Gene ID

11100

84446

Gene nameheterogeneous nuclear ribonucleoprotein U like 1BR serine/threonine kinase 1
SynonymsE1B-AP5|E1BAP5|HNRPUL1SAD-B|hSAD1
Cytomap

19q13.2

19q13.42

Type of geneprotein-codingprotein-coding
Descriptionheterogeneous nuclear ribonucleoprotein U-like protein 1E1B 55kDa associated protein 5E1B-55 kDa-associated protein 5adenovirus early region 1B-associated protein 5serine/threonine-protein kinase BRSK1BR serine/threonine-protein kinase 1SAD1 homologSAD1 kinasebrain-selective kinase 1brain-specific serine/threonine-protein kinase 1protein kinase SAD1Aserine/threonine-protein kinase SAD-Bsynapses of Amphids De
Modification date2024040720240407
UniProtAcc

Q9BUJ2

Q8TDC3

Ensembl transtripts involved in fusion geneENST idsENST00000263367, ENST00000352456, 
ENST00000392006, ENST00000593587, 
ENST00000595018, ENST00000602130, 
ENST00000378215, ENST00000594207, 
ENST00000326848, ENST00000588584, 
ENST00000309383, ENST00000585418, 
ENST00000590333, 
Context (manual curation of fusion genes in KinaseFusionDB)

PubMed: HNRNPUL1 [Title/Abstract] AND BRSK1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)HNRNPUL1(41787180)-BRSK1(55795889), # samples:1
check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneBRSK1

GO:0000086

G2/M transition of mitotic cell cycle

15150265

TgeneBRSK1

GO:0006468

protein phosphorylation

15150265

TgeneBRSK1

GO:0006974

DNA damage response

15150265

TgeneBRSK1

GO:0007095

mitotic G2 DNA damage checkpoint signaling

15150265

TgeneBRSK1

GO:0009411

response to UV

15150265

TgeneBRSK1

GO:0009411

response to UV

15150265

TgeneBRSK1

GO:0010212

response to ionizing radiation

15150265

TgeneBRSK1

GO:0018105

peptidyl-serine phosphorylation

15150265


check buttonKinase Fusion gene breakpoints across HNRNPUL1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonKinase Fusion gene breakpoints across BRSK1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


Top

Kinase Fusion Gene Sample Information

check buttonKinase Fusion gene information.
check button Kinase Fusion gene information from four resources (ChiTars 5.0, ChimerDB 4.0, COSMIC, and CCLE)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceSampleHgeneHchrHbpTgeneTchrTbp
ChimerDB4TCGA-C5-A907-01AHNRNPUL1chr19

41787180

BRSK1chr19

55795889



Top

Kinase Fusion ORF Analysis


check buttonKinase Fusion information from ORFfinder translation from full-length transcript sequence from KinaseFusionDB.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(amino acids)
ENST00000352456ENST00000590333HNRNPUL1chr1941787180BRSK1chr195579588935151012

Top

Kinase Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from KinaseFusionDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>Henst_Tenst_Hgene_Hchr_Hbp_Tgene_Tchr_Tbp_length(fusion AA)_AAseq

>ENST00000352456_ENST00000590333_HNRNPUL1_chr19_41787180_BRSK1_chr19_55795889_length(amino acids)=1012
MGGERERGSRTWARGGVSGLEPLGPHAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKP
DRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVR
RGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFAHAQYVGPYRL
EKTLGKGQTGLVKLGVHCITGQKVAIKIVNREKLSESVLMKVEREIAILKLIEHPHVLKLHDVYENKKYLYLVLEHVSGGELFDYLVKKG
RLTPKEARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEKNNIRIADFGMASLQVGDSLLETSCGSPHYACPEVIKGEKYDGRRADMWS
CGVILFALLVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVEPEKRLSLEQIQKHPWYLGGKHEPDPCLEPAPGRRVAM
RSLPSNGELDPDVLESMASLGCFRDRERLHRELRSEEENQEKMIYYLLLDRKERYPSCEDQDLPPRNDVDPPRKRVDSPMLSRHGKRRPE
RKSMEVLSITDAGGGGSPVPTRRALEMAQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEARGGGSPTSKTQTLPSRGPRGG
GAGEQPPPPSARSTPLPGPPGSPRSSGGTPLHSPLHTPRASPTGTPGTTPPPSPGGGVGGAAWRSRLNSIRNSFLGSPRFHRRKMQVPTA
EEMSSLTPESSPELAKRSWFGNFISLDKEEQIFLVLKDKPLSSIKADIVHAFLSIPSLSHSVLSQTSFRAEYKASGGPSVFQKPVRFQVD
ISSSEGPEPSPRRDGSGGGGIYSVTFTLISGPSRRFKRVVETIQAQLLSTHDQPSVQALADEKNGAQTRPAGAPPRSLQPPPGRPDPELS

--------------------------------------------------------------

Multiple Sequence Alignment of All Fusion Protein Isoforms



Top

Kinase Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:41787180/chr19:55795889)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
HNRNPUL1

Q9BUJ2

BRSK1

Q8TDC3

FUNCTION: Acts as a basic transcriptional regulator. Represses basic transcription driven by several virus and cellular promoters. When associated with BRD7, activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Also plays a role in mRNA processing and transport. Binds avidly to poly(G) and poly(C) RNA homopolymers in vitro. {ECO:0000269|PubMed:12489984, ECO:0000269|PubMed:9733834}.FUNCTION: Serine/threonine-protein kinase that plays a key role in polarization of neurons and centrosome duplication. Phosphorylates CDC25B, CDC25C, MAPT/TAU, RIMS1, TUBG1, TUBG2 and WEE1. Following phosphorylation and activation by STK11/LKB1, acts as a key regulator of polarization of cortical neurons, probably by mediating phosphorylation of microtubule-associated proteins such as MAPT/TAU at 'Thr-529' and 'Ser-579'. Also regulates neuron polarization by mediating phosphorylation of WEE1 at 'Ser-642' in postmitotic neurons, leading to down-regulate WEE1 activity in polarized neurons. In neurons, localizes to synaptic vesicles and plays a role in neurotransmitter release, possibly by phosphorylating RIMS1. Also acts as a positive regulator of centrosome duplication by mediating phosphorylation of gamma-tubulin (TUBG1 and TUBG2) at 'Ser-131', leading to translocation of gamma-tubulin and its associated proteins to the centrosome. Involved in the UV-induced DNA damage checkpoint response, probably by inhibiting CDK1 activity through phosphorylation and activation of WEE1, and inhibition of CDC25B and CDC25C. {ECO:0000269|PubMed:14976552, ECO:0000269|PubMed:15150265, ECO:0000269|PubMed:20026642, ECO:0000269|PubMed:21985311}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.

check button - Retained domain in the 5'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


check button - Retained domain in the 3'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote
TgeneHNRNPUL141787180BRSK155795889ENST0000035245601034_2850344DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
TgeneHNRNPUL141787180BRSK155795889ENST0000035245601934_2850779DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
TgeneHNRNPUL141787180BRSK155795889ENST00000352456010314_3560344DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00212
TgeneHNRNPUL141787180BRSK155795889ENST00000352456019314_3560779DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00212
TgeneHNRNPUL141787180BRSK155795889ENST00000352456121314_35642795DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00212


Top

Kinase Fusion Protein Structures

check button CIF files of the predicted kinase fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Kinase Fusion protein CIF link (fusion AA seq ID in KinaseFusionDB)HenstTenstHgeneHchrHbpTgeneTchrTbpAA seqLen(AA seq)
PDB file >>>TKFP_415_HNRNPUL1_BRSK1ENST00000352456ENST00000590333HNRNPUL1chr1941787180BRSK1chr1955795889
MGGERERGSRTWARGGVSGLEPLGPHAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKP
DRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVR
RGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFAHAQYVGPYRL
EKTLGKGQTGLVKLGVHCITGQKVAIKIVNREKLSESVLMKVEREIAILKLIEHPHVLKLHDVYENKKYLYLVLEHVSGGELFDYLVKKG
RLTPKEARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEKNNIRIADFGMASLQVGDSLLETSCGSPHYACPEVIKGEKYDGRRADMWS
CGVILFALLVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVEPEKRLSLEQIQKHPWYLGGKHEPDPCLEPAPGRRVAM
RSLPSNGELDPDVLESMASLGCFRDRERLHRELRSEEENQEKMIYYLLLDRKERYPSCEDQDLPPRNDVDPPRKRVDSPMLSRHGKRRPE
RKSMEVLSITDAGGGGSPVPTRRALEMAQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEARGGGSPTSKTQTLPSRGPRGG
GAGEQPPPPSARSTPLPGPPGSPRSSGGTPLHSPLHTPRASPTGTPGTTPPPSPGGGVGGAAWRSRLNSIRNSFLGSPRFHRRKMQVPTA
EEMSSLTPESSPELAKRSWFGNFISLDKEEQIFLVLKDKPLSSIKADIVHAFLSIPSLSHSVLSQTSFRAEYKASGGPSVFQKPVRFQVD
ISSSEGPEPSPRRDGSGGGGIYSVTFTLISGPSRRFKRVVETIQAQLLSTHDQPSVQALADEKNGAQTRPAGAPPRSLQPPPGRPDPELS
1012_HNRNPUL1_BRSK1


Top

Comparison of Fusion Protein Isoforms

check button Superimpose the 3D Structures Among All Fusion Protein Isoforms
* Download the pdb file and open it from the molstar online viewer.

check button Comparison of the Secondary Structures of Fusion Protein Isoforms

Top

Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

HNRNPUL1_BRSK1 does not have any known PDB structures.

Top

pLDDT score distribution

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
* The blue color at the bottom marks the best active site residues.


Top

Potential Active Site Information


check button The potential binding sites of these fusion proteins were identified using SiteMap, a module of the Schrodinger suite.
Kinase Fusion AA seq ID in KinaseFusionDBSite scoreSizeDscoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues

Top

Ramachandran Plot of Kinase Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.

236_HNRNPUL1_BRSK1_ramachandran.png
all structure HNRNPUL1-BRSK1

Top

Virtual Screening Results


check button Distribution of the average docking score across all approved kinase inhibitors.
Distribution of the number of occurrence across all approved kinase inhibitors.
5'-kinase fusion protein case
3'-kinase fusion protein case

Top

check button Drug information from DrugBank of the top 20 interacting small molecules.
* The detailed information of individual kinase inhibitors are available in the download page.
Fusion gene name infoDrugDocking scoreGlide g scoreGlide energy

Top

Kinase-Substrate Information of HNRNPUL1_BRSK1


check button Phosphorylation target of the kinase
(phosphosite, 03-17-2024)
KinaseKinase UniProt AccKinase speciesSubstrateSubstrate UniProt AccSubstrate phosphorylated residuesSubstrate phosphorylated sites (+/-7AA)Domain
BRSK1Q8TDC3humanMAPTP10636-8S262NVKskIGstENLkHQTubulin-binding
BRSK1Q8TDC3humanTUBG1P23258S385MANHTSIsSLFERTCTubulin_C
BRSK1Q8TDC3humanMAPTP10636-8S356rVQskIGsLDNItHVTubulin-binding
BRSK1Q8TDC3humanTUBG1P23258S131READGsDsLEGFVLCTubulin
BRSK1Q8TDC3-2humanPRKAA1Q13131T183sDGEFLRtsCGsPNyPkinase
BRSK1Q8TDC3-2humanCDC25BP30305S375ARVLRsksLCHDEIEM-inducer_phosp
BRSK1Q8TDC3-2humanCDC25CP30307S216sGLyRsPsMPENLNRM-inducer_phosp
BRSK1Q8TDC3-2humanBRSK1Q8TDC3-2T205VGDSLLEtSCGsPHYPkinase
BRSK1Q8TDC3-2humanWEE1P30291S642KKMNRSVsLtIy___
BRSK1Q8TDC3-2humanTUBG1P23258S131READGsDsLEGFVLCTubulin
BRSK1Q8TDC3-2humanBRSK1Q8TDC3-2S209LLEtSCGsPHYACPEPkinase


check button Biological Network Integration of This Kinase and Substrates
(GeneMANIA website)

check button Enriched GO biological processes of the phosphorylation target genes of the kinase
KinaseGOIDGO termP.adjust
BRSK1IDDescription0.00e+00
BRSK1GO:0000086G2/M transition of mitotic cell cycle3.56e-05
BRSK1GO:0044839cell cycle G2/M phase transition3.56e-05
BRSK1GO:1901990regulation of mitotic cell cycle phase transition5.31e-04
BRSK1GO:1901993regulation of meiotic cell cycle phase transition5.31e-04
BRSK1GO:0010389regulation of G2/M transition of mitotic cell cycle5.31e-04
BRSK1GO:1902749regulation of cell cycle G2/M phase transition6.15e-04
BRSK1GO:0044771meiotic cell cycle phase transition6.22e-04
BRSK1GO:1901987regulation of cell cycle phase transition6.59e-04
BRSK1GO:0044772mitotic cell cycle phase transition6.60e-04
BRSK1GO:0048285organelle fission6.89e-04
BRSK1GO:0090043regulation of tubulin deacetylation1.06e-03
BRSK1GO:0090042tubulin deacetylation1.17e-03
BRSK1GO:0051446positive regulation of meiotic cell cycle1.50e-03
BRSK1GO:0010971positive regulation of G2/M transition of mitotic cell cycle1.54e-03
BRSK1GO:1903046meiotic cell cycle process1.54e-03
BRSK1GO:0034063stress granule assembly1.62e-03
BRSK1GO:1902751positive regulation of cell cycle G2/M phase transition1.62e-03
BRSK1GO:0090311regulation of protein deacetylation1.84e-03
BRSK1GO:0051321meiotic cell cycle2.91e-03
BRSK1GO:1903747regulation of establishment of protein localization to mitochondrion3.53e-03
BRSK1GO:0006476protein deacetylation4.30e-03
BRSK1GO:0031122cytoplasmic microtubule organization4.30e-03
BRSK1GO:0051445regulation of meiotic cell cycle5.09e-03
BRSK1GO:0035601protein deacylation5.09e-03
BRSK1GO:0098732macromolecule deacylation5.34e-03
BRSK1GO:0000280nuclear division7.46e-03
BRSK1GO:2000243positive regulation of reproductive process7.46e-03
BRSK1GO:0046785microtubule polymerization8.59e-03
BRSK1GO:1901992positive regulation of mitotic cell cycle phase transition9.01e-03
BRSK1GO:0006473protein acetylation1.02e-02
BRSK1GO:1901989positive regulation of cell cycle phase transition1.24e-02
BRSK1GO:0072655establishment of protein localization to mitochondrion1.30e-02
BRSK1GO:0045931positive regulation of mitotic cell cycle1.35e-02
BRSK1GO:0070585protein localization to mitochondrion1.37e-02
BRSK1GO:0031109microtubule polymerization or depolymerization1.39e-02
BRSK1GO:0061982meiosis I cell cycle process1.39e-02
BRSK1GO:0045834positive regulation of lipid metabolic process1.54e-02
BRSK1GO:0043543protein acylation1.54e-02
BRSK1GO:0009411response to UV1.59e-02
BRSK1GO:0034614cellular response to reactive oxygen species1.59e-02
BRSK1GO:0030010establishment of cell polarity1.59e-02
BRSK1GO:0050770regulation of axonogenesis1.59e-02
BRSK1GO:0070507regulation of microtubule cytoskeleton organization1.63e-02
BRSK1GO:0009266response to temperature stimulus1.79e-02
BRSK1GO:1901991negative regulation of mitotic cell cycle phase transition2.29e-02
BRSK1GO:0000302response to reactive oxygen species2.45e-02
BRSK1GO:2000241regulation of reproductive process2.45e-02
BRSK1GO:0019722calcium-mediated signaling2.46e-02
BRSK1GO:0048167regulation of synaptic plasticity2.50e-02

Top

Related Drugs to HNRNPUL1_BRSK1


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

check button Distribution of the number of studies mentioning HNRNPUL1-BRSK1 and kinase inhibitors the PubMed Abstract (04-01-2024)

Fusion gene - drug pair 1Fusion gene - drug pair 2PMIDPublication dateDOIStudy title

Top

Related Diseases to HNRNPUL1_BRSK1


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Related diseases from the literature mentioned this fusion gene and drug.
(PubMed, 04-01-2024)
MeSH IDMeSH term

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource


Top

Clinical Trials of the Found Drugs/Small Molecules


check button Statistics of the Clinical Trials of the Found Kinase Inibitors from clinicaltrials.gov (06-17-2024)

check button Clinical Trials from clinicaltrials.gov (06-17-2024)

Fusion GeneKinase InhibitorNCT IDStudy StatusPhasesDisease# EnrolmentDate