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Center for Computational Systems Medicine
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Kinase Fusion Gene Summary

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Kinase Fusion Gene Sample Information

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Kinase Fusion ORF Analysis

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Kinase Fusion Amino Acid Sequences

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Multiple Sequence Alignment of All Fusion Protein Isoforms

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Kinase Fusion Protein Functional Features

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Kinase Fusion Protein Structures

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Comparison of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

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pLDDT Scores and Difference Analysis of pLDDT Scores Between the Active Sites (Best) and Non-Active Sites.

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Ramachandran Plot of Kinase Fusion Protein Structure

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Potential Active Site Information

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Virtual Screening Results

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Kinase-Substrate Information

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Related Drugs with This Kinase Fusion Protein

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Related Disease with This Kinase Fusion Protein

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Clinical Trials of the Found Drugs/Small Molecules

Kinase Fusion Gene:KCNA2_MASTL

Kinase Fusion Protein Summary

check button Kinase Fusion gene summary
Kinase Fusion partner gene informationKinase Fusion gene name: KCNA2_MASTL
KinaseFusionDB ID: KFG2981
FusionGDB2.0 ID: KFG2981
HgeneTgene
Gene symbol

KCNA2

MASTL

Gene ID

3737

84930

Gene namepotassium voltage-gated channel subfamily A member 2microtubule associated serine/threonine kinase like
SynonymsDEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2GREATWALL|GW|GWL|MAST-L|THC2
Cytomap

1p13.3

10p12.1

Type of geneprotein-codingprotein-coding
Descriptionpotassium voltage-gated channel subfamily A member 2potassium channel, voltage gated shaker related subfamily A, member 2potassium voltage-gated channel, shaker-related subfamily, member 2voltage-gated K(+) channel HuKIVvoltage-gated potassium channelserine/threonine-protein kinase greatwallgreatwall kinase homologgreatwall protein kinase
Modification date2024041120240403
UniProtAcc

P16389

Q96GX5

Ensembl transtripts involved in fusion geneENST idsENST00000369770, ENST00000316361, 
ENST00000440270, ENST00000485317, 
ENST00000525120, 
ENST00000342386, 
ENST00000375940, ENST00000375946, 
ENST00000477034, 
Context (manual curation of fusion genes in KinaseFusionDB)

PubMed: KCNA2 [Title/Abstract] AND MASTL [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)KCNA2(111136202)-MASTL(27474540), # samples:1
check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonKinase Fusion gene breakpoints across KCNA2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonKinase Fusion gene breakpoints across MASTL (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.


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Kinase Fusion Gene Sample Information

check buttonKinase Fusion gene information.
check button Kinase Fusion gene information from four resources (ChiTars 5.0, ChimerDB 4.0, COSMIC, and CCLE)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceSampleHgeneHchrHbpTgeneTchrTbp
ChiTaRS5.0AW022870KCNA2chr1

111136202

MASTLchr10

27474540



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Kinase Fusion ORF Analysis


check buttonKinase Fusion information from ORFfinder translation from full-length transcript sequence from KinaseFusionDB.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(amino acids)

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Kinase Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from KinaseFusionDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>Henst_Tenst_Hgene_Hchr_Hbp_Tgene_Tchr_Tbp_length(fusion AA)_AAseq

Multiple Sequence Alignment of All Fusion Protein Isoforms



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Kinase Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:111136202/:27474540)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
KCNA2

P16389

MASTL

Q96GX5

FUNCTION: Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain and the central nervous system, but also in the cardiovascular system. Prevents aberrant action potential firing and regulates neuronal output. Forms tetrameric potassium-selective channels through which potassium ions pass in accordance with their electrochemical gradient. The channel alternates between opened and closed conformations in response to the voltage difference across the membrane (PubMed:19912772, PubMed:8495559, PubMed:11211111, PubMed:23769686). Can form functional homotetrameric channels and heterotetrameric channels that contain variable proportions of KCNA1, KCNA2, KCNA4, KCNA5, KCNA6, KCNA7, and possibly other family members as well; channel properties depend on the type of alpha subunits that are part of the channel (PubMed:8495559, PubMed:20220134). Channel properties are modulated by cytoplasmic beta subunits that regulate the subcellular location of the alpha subunits and promote rapid inactivation of delayed rectifier potassium channels. In vivo, membranes probably contain a mixture of heteromeric potassium channel complexes, making it difficult to assign currents observed in intact tissues to any particular potassium channel family member. Homotetrameric KCNA2 forms a delayed-rectifier potassium channel that opens in response to membrane depolarization, followed by slow spontaneous channel closure (PubMed:19912772, PubMed:23769686). In contrast, a heteromultimer formed by KCNA2 and KCNA4 shows rapid inactivation (PubMed:8495559). Regulates neuronal excitability and plays a role as pacemaker in the regulation of neuronal action potentials (By similarity). KCNA2-containing channels play a presynaptic role and prevent hyperexcitability and aberrant action potential firing (By similarity). Response to toxins that are selective for KCNA2-containing potassium channels suggests that in Purkinje cells, dendritic subthreshold KCNA2-containing potassium channels prevent random spontaneous calcium spikes, suppressing dendritic hyperexcitability without hindering the generation of somatic action potentials, and thereby play an important role in motor coordination (By similarity). Plays a role in the induction of long-term potentiation of neuron excitability in the CA3 layer of the hippocampus (By similarity). May function as down-stream effector for G protein-coupled receptors and inhibit GABAergic inputs to basolateral amygdala neurons (By similarity). May contribute to the regulation of neurotransmitter release, such as gamma-aminobutyric acid (GABA) (By similarity). Contributes to the regulation of the axonal release of the neurotransmitter dopamine (By similarity). Reduced KCNA2 expression plays a role in the perception of neuropathic pain after peripheral nerve injury, but not acute pain (By similarity). Plays a role in the regulation of the time spent in non-rapid eye movement (NREM) sleep (By similarity). {ECO:0000250|UniProtKB:P63141, ECO:0000250|UniProtKB:P63142, ECO:0000269|PubMed:11211111, ECO:0000269|PubMed:19912772, ECO:0000269|PubMed:20220134, ECO:0000269|PubMed:23769686, ECO:0000269|PubMed:8495559, ECO:0000305}.FUNCTION: Serine/threonine kinase that plays a key role in M phase by acting as a regulator of mitosis entry and maintenance. Acts by promoting the inactivation of protein phosphatase 2A (PP2A) during M phase: does not directly inhibit PP2A but acts by mediating phosphorylation and subsequent activation of ARPP19 and ENSA at 'Ser-62' and 'Ser-67', respectively. ARPP19 and ENSA are phosphatase inhibitors that specifically inhibit the PPP2R2D (PR55-delta) subunit of PP2A. Inactivation of PP2A during M phase is essential to keep cyclin-B1-CDK1 activity high. Following DNA damage, it is also involved in checkpoint recovery by being inhibited. Phosphorylates histone protein in vitro; however such activity is unsure in vivo. May be involved in megakaryocyte differentiation. {ECO:0000269|PubMed:12890928, ECO:0000269|PubMed:19680222, ECO:0000269|PubMed:19793917, ECO:0000269|PubMed:20538976, ECO:0000269|PubMed:20818157}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.

check button - Retained domain in the 5'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


check button - Retained domain in the 3'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


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Kinase-Substrate Information of KCNA2_MASTL


check button Phosphorylation target of the kinase
(phosphosite, 03-17-2024)
KinaseKinase UniProt AccKinase speciesSubstrateSubstrate UniProt AccSubstrate phosphorylated residuesSubstrate phosphorylated sites (+/-7AA)Domain
MASTLQ96GX5humanENSAO43768S67kGQkyFDsGDyNMAkEndosulfine
MASTLQ96GX5humanARPP19P56211S62kGQkyFDsGDyNMAkEndosulfine


check button Biological Network Integration of This Kinase and Substrates
(GeneMANIA website)

check button Enriched GO biological processes of the phosphorylation target genes of the kinase
KinaseGOIDGO termP.adjust
MASTLIDDescription0.00e+00
MASTLGO:0035308negative regulation of protein dephosphorylation9.69e-05
MASTLGO:0035305negative regulation of dephosphorylation9.69e-05
MASTLGO:0035304regulation of protein dephosphorylation3.18e-04
MASTLGO:0035303regulation of dephosphorylation4.53e-04
MASTLGO:0000086G2/M transition of mitotic cell cycle6.34e-04
MASTLGO:0044839cell cycle G2/M phase transition6.48e-04
MASTLGO:0006470protein dephosphorylation9.54e-04
MASTLGO:0016311dephosphorylation1.85e-03
MASTLGO:0045936negative regulation of phosphate metabolic process2.31e-03
MASTLGO:0010563negative regulation of phosphorus metabolic process2.31e-03
MASTLGO:0031400negative regulation of protein modification process2.82e-03
MASTLGO:0044772mitotic cell cycle phase transition2.99e-03
MASTLGO:0045722positive regulation of gluconeogenesis9.93e-03
MASTLGO:0046326positive regulation of glucose import1.62e-02
MASTLGO:0010828positive regulation of glucose transmembrane transport1.73e-02
MASTLGO:0010907positive regulation of glucose metabolic process1.73e-02
MASTLGO:0006111regulation of gluconeogenesis1.91e-02
MASTLGO:0046324regulation of glucose import2.05e-02
MASTLGO:0046323glucose import2.37e-02
MASTLGO:0010827regulation of glucose transmembrane transport2.37e-02
MASTLGO:0045913positive regulation of carbohydrate metabolic process2.37e-02
MASTLGO:0006094gluconeogenesis2.48e-02
MASTLGO:0019319hexose biosynthetic process2.48e-02
MASTLGO:0046364monosaccharide biosynthetic process2.48e-02
MASTLGO:0010906regulation of glucose metabolic process2.48e-02
MASTLGO:0043255regulation of carbohydrate biosynthetic process2.48e-02
MASTLGO:1904659glucose transmembrane transport2.60e-02
MASTLGO:0008645hexose transmembrane transport2.60e-02
MASTLGO:0015749monosaccharide transmembrane transport2.60e-02
MASTLGO:0034219carbohydrate transmembrane transport2.78e-02
MASTLGO:0062013positive regulation of small molecule metabolic process2.90e-02
MASTLGO:0007584response to nutrient2.95e-02
MASTLGO:0008643carbohydrate transport2.95e-02
MASTLGO:0050796regulation of insulin secretion2.97e-02
MASTLGO:0006109regulation of carbohydrate metabolic process3.06e-02
MASTLGO:0006006glucose metabolic process3.06e-02
MASTLGO:0090276regulation of peptide hormone secretion3.06e-02
MASTLGO:0002791regulation of peptide secretion3.06e-02
MASTLGO:0030073insulin secretion3.06e-02
MASTLGO:0090087regulation of peptide transport3.06e-02
MASTLGO:0016051carbohydrate biosynthetic process3.16e-02
MASTLGO:0034764positive regulation of transmembrane transport3.16e-02
MASTLGO:0019318hexose metabolic process3.31e-02
MASTLGO:0030072peptide hormone secretion3.31e-02
MASTLGO:0002790peptide secretion3.31e-02
MASTLGO:0046883regulation of hormone secretion3.31e-02
MASTLGO:0005996monosaccharide metabolic process3.31e-02
MASTLGO:0015833peptide transport3.31e-02
MASTLGO:0050708regulation of protein secretion3.31e-02

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Related Drugs to KCNA2_MASTL


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

check button Distribution of the number of studies mentioning KCNA2-MASTL and kinase inhibitors the PubMed Abstract (04-01-2024)

Fusion gene - drug pair 1Fusion gene - drug pair 2PMIDPublication dateDOIStudy title

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Related Diseases to KCNA2_MASTL


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Related diseases from the literature mentioned this fusion gene and drug.
(PubMed, 04-01-2024)
MeSH IDMeSH term

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource


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Clinical Trials of the Found Drugs/Small Molecules


check button Statistics of the Clinical Trials of the Found Kinase Inibitors from clinicaltrials.gov (06-17-2024)

check button Clinical Trials from clinicaltrials.gov (06-17-2024)

Fusion GeneKinase InhibitorNCT IDStudy StatusPhasesDisease# EnrolmentDate