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Center for Computational Systems Medicine
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Kinase Fusion Gene Summary

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Kinase Fusion Gene Sample Information

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Kinase Fusion ORF Analysis

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Kinase Fusion Amino Acid Sequences

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Multiple Sequence Alignment of All Fusion Protein Isoforms

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Kinase Fusion Protein Functional Features

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Kinase Fusion Protein Structures

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Comparison of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

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pLDDT Scores and Difference Analysis of pLDDT Scores Between the Active Sites (Best) and Non-Active Sites.

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Ramachandran Plot of Kinase Fusion Protein Structure

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Potential Active Site Information

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Virtual Screening Results

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Kinase-Substrate Information

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Related Drugs with This Kinase Fusion Protein

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Related Disease with This Kinase Fusion Protein

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Clinical Trials of the Found Drugs/Small Molecules

Kinase Fusion Gene:MAP3K3_SMURF2

Kinase Fusion Protein Summary

check button Kinase Fusion gene summary
Kinase Fusion partner gene informationKinase Fusion gene name: MAP3K3_SMURF2
KinaseFusionDB ID: KFG3408
FusionGDB2.0 ID: KFG3408
HgeneTgene
Gene symbol

MAP3K3

SMURF2

Gene ID

4215

64750

Gene namemitogen-activated protein kinase kinase kinase 3SMAD specific E3 ubiquitin protein ligase 2
SynonymsMAPKKK3|MEKK3-
Cytomap

17q23.3

17q23.3-q24.1

Type of geneprotein-codingprotein-coding
Descriptionmitogen-activated protein kinase kinase kinase 3MAP/ERK kinase kinase 3MAPK/ERK kinase kinase 3MEK kinase 3MEKK 3E3 ubiquitin-protein ligase SMURF2E3 ubiquitin ligase SMURF2HECT-type E3 ubiquitin transferase SMURF2SMAD ubiquitination regulatory factor 2hSMURF2
Modification date2024030520240411
UniProtAcc

Q99759

Q9HAU4

Ensembl transtripts involved in fusion geneENST idsENST00000579585, ENST00000584573, 
ENST00000361733, ENST00000361357, 
ENST00000577395, ENST00000577784, 
ENST00000262435, ENST00000578200, 
Context (manual curation of fusion genes in KinaseFusionDB)

PubMed: MAP3K3 [Title/Abstract] AND SMURF2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)
check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMAP3K3

GO:0035556

intracellular signal transduction

15001576

HgeneMAP3K3

GO:0046777

protein autophosphorylation

15001576

TgeneSMURF2

GO:0006511

ubiquitin-dependent protein catabolic process

14755250

TgeneSMURF2

GO:0030512

negative regulation of transforming growth factor beta receptor signaling pathway

19255252

TgeneSMURF2

GO:1901165

positive regulation of trophoblast cell migration

19255252


check buttonKinase Fusion gene breakpoints across MAP3K3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonKinase Fusion gene breakpoints across SMURF2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.


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Kinase Fusion Gene Sample Information

check buttonKinase Fusion gene information.
check button Kinase Fusion gene information from four resources (ChiTars 5.0, ChimerDB 4.0, COSMIC, and CCLE)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceSampleHgeneHchrHbpTgeneTchrTbp
CCLE95T1000MAP3K3chr17

61762950

SMURF2chr17

62553840

CCLE95T1000MAP3K3chr17

61762938

SMURF2chr17

62553840



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Kinase Fusion ORF Analysis


check buttonKinase Fusion information from ORFfinder translation from full-length transcript sequence from KinaseFusionDB.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(amino acids)
ENST00000579585ENST00000262435MAP3K3chr1761762950SMURF2chr17625538402283577

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Kinase Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from KinaseFusionDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>Henst_Tenst_Hgene_Hchr_Hbp_Tgene_Tchr_Tbp_length(fusion AA)_AAseq

>ENST00000579585_ENST00000262435_MAP3K3_chr17_61762950_SMURF2_chr17_62553840_length(amino acids)=577
MDEQEALNSIMNDLVALQMNRRHRMPGYETMKNKDTGHSNRQKKHNSSSSALLNSPTVTTSSCAGASEKKKFLSDVRIKFEHNGERRIIA
FSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQDRNHNSSSPHSGVSRQVRIKASQSAG
DINTIYQPPEPRSRHLSVSSQNPGRSSPPPGYVPERQQHIARQGSYTSINSEGEFIPETSEQCMLDPLSSAENSLSGSCQSLDRSADREW
LYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHN
SLVWILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKE
LELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLP

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Multiple Sequence Alignment of All Fusion Protein Isoforms



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Kinase Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:/chr17:)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MAP3K3

Q99759

SMURF2

Q9HAU4

FUNCTION: Component of a protein kinase signal transduction cascade. Mediates activation of the NF-kappa-B, AP1 and DDIT3 transcriptional regulators. {ECO:0000269|PubMed:12912994, ECO:0000269|PubMed:14661019, ECO:0000269|PubMed:14743216, ECO:0000269|PubMed:9006902}.FUNCTION: E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (PubMed:11016919). Interacts with SMAD7 to trigger SMAD7-mediated transforming growth factor beta/TGF-beta receptor ubiquitin-dependent degradation, thereby down-regulating TGF-beta signaling (PubMed:11163210, PubMed:12717440, PubMed:21791611). In addition, interaction with SMAD7 activates autocatalytic degradation, which is prevented by interaction with AIMP1 (PubMed:18448069). Also forms a stable complex with TGF-beta receptor-mediated phosphorylated SMAD1, SMAD2 and SMAD3, and targets SMAD1 and SMAD2 for ubiquitination and proteasome-mediated degradation (PubMed:11016919, PubMed:11158580, PubMed:11389444). SMAD2 may recruit substrates, such as SNON, for ubiquitin-dependent degradation (PubMed:11389444). Negatively regulates TGFB1-induced epithelial-mesenchymal transition and myofibroblast differentiation (PubMed:30696809). {ECO:0000269|PubMed:11016919, ECO:0000269|PubMed:11158580, ECO:0000269|PubMed:11163210, ECO:0000269|PubMed:11389444, ECO:0000269|PubMed:12717440, ECO:0000269|PubMed:18448069, ECO:0000269|PubMed:21791611, ECO:0000269|PubMed:30696809}.; FUNCTION: (Microbial infection) In case of filoviruses Ebola/EBOV and Marburg/MARV infection, the complex formed by viral matrix protein VP40 and SMURF2 facilitates virus budding. {ECO:0000269|PubMed:33673144}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.

check button - Retained domain in the 5'-partner of fusion protein (protein functional feature from UniProt).
267236267
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote
HgeneMAP3K361762950SMURF262553840ENST00000579585101844_1231658DomainNote=PB1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01081
HgeneMAP3K361762950SMURF262553840ENST0000057958581644_1231627DomainNote=PB1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01081
HgeneMAP3K361762950SMURF262553840ENST0000057958591744_1231658DomainNote=PB1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01081


check button - Retained domain in the 3'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


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Kinase Fusion Protein Structures

check button CIF files of the predicted kinase fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Kinase Fusion protein CIF link (fusion AA seq ID in KinaseFusionDB)HenstTenstHgeneHchrHbpTgeneTchrTbpAA seqLen(AA seq)
PDB file >>>155_MAP3K3_SMURF2ENST00000579585ENST00000262435MAP3K3chr1761762950SMURF2chr1762553840
MDEQEALNSIMNDLVALQMNRRHRMPGYETMKNKDTGHSNRQKKHNSSSSALLNSPTVTTSSCAGASEKKKFLSDVRIKFEHNGERRIIA
FSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQDRNHNSSSPHSGVSRQVRIKASQSAG
DINTIYQPPEPRSRHLSVSSQNPGRSSPPPGYVPERQQHIARQGSYTSINSEGEFIPETSEQCMLDPLSSAENSLSGSCQSLDRSADREW
LYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHN
SLVWILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKE
LELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLP
577
3D view using mol* of 155_MAP3K3_SMURF2
PDB file >>>HKFP_228_MAP3K3_SMURF2ENST00000579585ENST00000262435MAP3K3chr1761762950SMURF2chr1762553840
MDEQEALNSIMNDLVALQMNRRHRMPGYETMKNKDTGHSNRQKKHNSSSSALLNSPTVTTSSCAGASEKKKFLSDVRIKFEHNGERRIIA
FSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQDRNHNSSSPHSGVSRQVRIKASQSAG
DINTIYQPPEPRSRHLSVSSQNPGRSSPPPGYVPERQQHIARQGSYTSINSEGEFIPETSEQCMLDPLSSAENSLSGSCQSLDRSADREW
LYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHN
SLVWILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKE
LELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLP
577_MAP3K3_SMURF2


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Comparison of Fusion Protein Isoforms

check button Superimpose the 3D Structures Among All Fusion Protein Isoforms
* Download the pdb file and open it from the molstar online viewer.

check button Comparison of the Secondary Structures of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

MAP3K3_SMURF2 does not have any known PDB structures.

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pLDDT score distribution

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
* The blue color at the bottom marks the best active site residues.
155_MAP3K3_SMURF2.png
all structure sitemap plddt 155_MAP3K3_SMURF2.png
155_MAP3K3_SMURF2.png
all structure sitemap plddt2 155_MAP3K3_SMURF2.png


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Potential Active Site Information


check button The potential binding sites of these fusion proteins were identified using SiteMap, a module of the Schrodinger suite.
Kinase Fusion AA seq ID in KinaseFusionDBSite scoreSizeDscoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues

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Ramachandran Plot of Kinase Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.

155_MAP3K3_SMURF2_ramachandran.png
all structure MAP3K3-SMURF2

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Virtual Screening Results


check button Distribution of the average docking score across all approved kinase inhibitors.
Distribution of the number of occurrence across all approved kinase inhibitors.
5'-kinase fusion protein case
all structure MAP3K3-SMURF2
3'-kinase fusion protein case

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check button Drug information from DrugBank of the top 20 interacting small molecules.
* The detailed information of individual kinase inhibitors are available in the download page.
Fusion gene name infoDrugDocking scoreGlide g scoreGlide energy
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Netarsudil-8.89672-8.90782-58.9774
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Netarsudil-8.89672-8.90782-58.9774
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Dacomitinib-8.46774-8.576039999999999-58.6605
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Dacomitinib-8.46774-8.576039999999999-58.6605
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Lapatinib-8.06482-8.15362-55.5549
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Pazopanib-7.95976-7.966660000000001-55.156000000000006
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Pazopanib-7.95976-7.966660000000001-55.156000000000006
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Selpercatinib-7.944369999999999-7.97487-36.053000000000004
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Nilotinib-7.895239999999999-8.034839999999999-57.0944
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Nilotinib-7.895239999999999-8.034839999999999-57.0944
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Vemurafenib-7.8569-8.2361-56.4634
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Vemurafenib-7.8569-8.2361-56.4634
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Tepotinib-7.8313-7.8324-60.5399
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Trametinib-7.77447-7.77447-46.7589
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Lapatinib-7.7636199999999995-7.8524199999999995-57.7121
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Mobocertinib-7.5777-7.5854-56.9974
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Cobimetinib-7.55335-7.55615-44.2466
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Netarsudil-7.54501-7.55611-54.5026
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Netarsudil-7.54501-7.55611-54.5026
155_MAP3K3_SMURF2-DOCK_HTVS_1-001Tepotinib-7.50771-7.50881-60.415

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Kinase-Substrate Information of MAP3K3_SMURF2


check button Phosphorylation target of the kinase
(phosphosite, 03-17-2024)
KinaseKinase UniProt AccKinase speciesSubstrateSubstrate UniProt AccSubstrate phosphorylated residuesSubstrate phosphorylated sites (+/-7AA)Domain
MAP3K3Q99759humanGLI1P08151S201PLEGDMSsPNstGIQ
MAP3K3Q99759humanGLI1P08151S243DCRWDGCsQEFDSQE
MAP3K3Q99759humanRCAN1P53805S163PDKQFLIsPPAsPPVCalcipressin
MAP3K3Q99759humanRCAN1P53805S167FLIsPPAsPPVGWKQCalcipressin
MAP3K3Q99759humanGLI1P08151T1074QRGSsGHtPPPsGPP
MAP3K3Q99759humanGLI1P08151S1078sGHtPPPsGPPNMAV
MAP3K3Q99759humanGLI1P08151S968SGSYPTPsPCHENFV
MAP3K3Q99759humanGLI1P08151S204GDMSsPNstGIQDPL


check button Biological Network Integration of This Kinase and Substrates
(GeneMANIA website)

check button Enriched GO biological processes of the phosphorylation target genes of the kinase
KinaseGOIDGO termP.adjust
MAP3K3IDDescription0.00e+00
MAP3K3GO:0060537muscle tissue development1.79e-02
MAP3K3GO:0007614short-term memory1.79e-02
MAP3K3GO:0021936regulation of cerebellar granule cell precursor proliferation1.79e-02
MAP3K3GO:0031987locomotion involved in locomotory behavior1.79e-02
MAP3K3GO:0070885negative regulation of calcineurin-NFAT signaling cascade1.79e-02
MAP3K3GO:0106057negative regulation of calcineurin-mediated signaling1.79e-02
MAP3K3GO:0021534cell proliferation in hindbrain1.79e-02
MAP3K3GO:0021924cell proliferation in external granule layer1.79e-02
MAP3K3GO:0021930cerebellar granule cell precursor proliferation1.79e-02
MAP3K3GO:0060033anatomical structure regression1.79e-02
MAP3K3GO:2000345regulation of hepatocyte proliferation1.79e-02
MAP3K3GO:0030903notochord development1.79e-02
MAP3K3GO:0050849negative regulation of calcium-mediated signaling1.79e-02
MAP3K3GO:0072574hepatocyte proliferation1.79e-02
MAP3K3GO:0072575epithelial cell proliferation involved in liver morphogenesis1.79e-02
MAP3K3GO:0072576liver morphogenesis1.79e-02
MAP3K3GO:0097421liver regeneration1.79e-02
MAP3K3GO:0060045positive regulation of cardiac muscle cell proliferation1.79e-02
MAP3K3GO:0009954proximal/distal pattern formation1.79e-02
MAP3K3GO:0021696cerebellar cortex morphogenesis1.79e-02
MAP3K3GO:0055023positive regulation of cardiac muscle tissue growth1.79e-02
MAP3K3GO:0045880positive regulation of smoothened signaling pathway1.79e-02
MAP3K3GO:0045740positive regulation of DNA replication1.79e-02
MAP3K3GO:0048741skeletal muscle fiber development1.79e-02
MAP3K3GO:0060421positive regulation of heart growth1.79e-02
MAP3K3GO:0070884regulation of calcineurin-NFAT signaling cascade1.79e-02
MAP3K3GO:0106056regulation of calcineurin-mediated signaling1.79e-02
MAP3K3GO:0014904myotube cell development1.79e-02
MAP3K3GO:0021983pituitary gland development1.79e-02
MAP3K3GO:0021587cerebellum morphogenesis1.79e-02
MAP3K3GO:0033173calcineurin-NFAT signaling cascade1.79e-02
MAP3K3GO:0021575hindbrain morphogenesis1.79e-02
MAP3K3GO:0060043regulation of cardiac muscle cell proliferation1.79e-02
MAP3K3GO:0097720calcineurin-mediated signaling1.79e-02
MAP3K3GO:0048546digestive tract morphogenesis1.79e-02
MAP3K3GO:0030850prostate gland development1.79e-02
MAP3K3GO:0021695cerebellar cortex development1.79e-02
MAP3K3GO:0046622positive regulation of organ growth1.79e-02
MAP3K3GO:0060038cardiac muscle cell proliferation1.97e-02
MAP3K3GO:0002931response to ischemia1.97e-02
MAP3K3GO:2000179positive regulation of neural precursor cell proliferation1.97e-02
MAP3K3GO:0031100animal organ regeneration1.97e-02
MAP3K3GO:0055021regulation of cardiac muscle tissue growth1.97e-02
MAP3K3GO:1902808positive regulation of cell cycle G1/S phase transition1.97e-02
MAP3K3GO:0001655urogenital system development1.98e-02
MAP3K3GO:0060420regulation of heart growth2.06e-02
MAP3K3GO:0021536diencephalon development2.24e-02
MAP3K3GO:0014855striated muscle cell proliferation2.26e-02
MAP3K3GO:0050848regulation of calcium-mediated signaling2.26e-02

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Related Drugs to MAP3K3_SMURF2


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

check button Distribution of the number of studies mentioning MAP3K3-SMURF2 and kinase inhibitors the PubMed Abstract (04-01-2024)

Fusion gene - drug pair 1Fusion gene - drug pair 2PMIDPublication dateDOIStudy title

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Related Diseases to MAP3K3_SMURF2


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Related diseases from the literature mentioned this fusion gene and drug.
(PubMed, 04-01-2024)
MeSH IDMeSH term

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource


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Clinical Trials of the Found Drugs/Small Molecules


check button Statistics of the Clinical Trials of the Found Kinase Inibitors from clinicaltrials.gov (06-17-2024)

check button Clinical Trials from clinicaltrials.gov (06-17-2024)

Fusion GeneKinase InhibitorNCT IDStudy StatusPhasesDisease# EnrolmentDate