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Center for Computational Systems Medicine
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Kinase Fusion Gene Summary

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Kinase Fusion Gene Sample Information

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Kinase Fusion ORF Analysis

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Kinase Fusion Amino Acid Sequences

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Multiple Sequence Alignment of All Fusion Protein Isoforms

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Kinase Fusion Protein Functional Features

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Kinase Fusion Protein Structures

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Comparison of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

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pLDDT Scores and Difference Analysis of pLDDT Scores Between the Active Sites (Best) and Non-Active Sites.

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Ramachandran Plot of Kinase Fusion Protein Structure

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Potential Active Site Information

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Virtual Screening Results

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Kinase-Substrate Information

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Related Drugs with This Kinase Fusion Protein

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Related Disease with This Kinase Fusion Protein

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Clinical Trials of the Found Drugs/Small Molecules

Kinase Fusion Gene:AXL_DPRX

Kinase Fusion Protein Summary

check button Kinase Fusion gene summary
Kinase Fusion partner gene informationKinase Fusion gene name: AXL_DPRX
KinaseFusionDB ID: KFG527
FusionGDB2.0 ID: KFG527
HgeneTgene
Gene symbol

AXL

DPRX

Gene ID

558

503834

Gene nameAXL receptor tyrosine kinasedivergent-paired related homeobox
SynonymsARK|AXL3|JTK11|Tyro7|UFO-
Cytomap

19q13.2

19q13.42

Type of geneprotein-codingprotein-coding
Descriptiontyrosine-protein kinase receptor UFOAXL oncogeneAXL transforming sequence/genedivergent paired-related homeobox
Modification date2024041620240305
UniProtAcc

P30530

A6NFQ7

Ensembl transtripts involved in fusion geneENST idsENST00000301178, ENST00000359092, 
ENST00000593513, ENST00000594880, 
ENST00000376650, 
Context (manual curation of fusion genes in KinaseFusionDB)

PubMed: AXL [Title/Abstract] AND DPRX [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)AXL(41737203)-DPRX(54135316), # samples:1
check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneAXL

GO:0001961

positive regulation of cytokine-mediated signaling pathway

18840707

HgeneAXL

GO:0006909

phagocytosis

21501828

HgeneAXL

GO:0032689

negative regulation of type II interferon production

18840707

HgeneAXL

GO:0032825

positive regulation of natural killer cell differentiation

18840707

HgeneAXL

GO:0035457

cellular response to interferon-alpha

19657094

HgeneAXL

GO:0071222

cellular response to lipopolysaccharide

19657094

HgeneAXL

GO:2000669

negative regulation of dendritic cell apoptotic process

19657094


check buttonKinase Fusion gene breakpoints across AXL (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonKinase Fusion gene breakpoints across DPRX (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.


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Kinase Fusion Gene Sample Information

check buttonKinase Fusion gene information.
check button Kinase Fusion gene information from four resources (ChiTars 5.0, ChimerDB 4.0, COSMIC, and CCLE)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceSampleHgeneHchrHbpTgeneTchrTbp
ChimerDB4TCGA-86-8073-01AAXLchr19

41737203

DPRXchr19

54135316



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Kinase Fusion ORF Analysis


check buttonKinase Fusion information from ORFfinder translation from full-length transcript sequence from KinaseFusionDB.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(amino acids)

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Kinase Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from KinaseFusionDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>Henst_Tenst_Hgene_Hchr_Hbp_Tgene_Tchr_Tbp_length(fusion AA)_AAseq

Multiple Sequence Alignment of All Fusion Protein Isoforms



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Kinase Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:41737203/:54135316)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
AXL

P30530

DPRX

A6NFQ7

FUNCTION: Receptor tyrosine kinase that transduces signals from the extracellular matrix into the cytoplasm by binding growth factor GAS6 and which is thus regulating many physiological processes including cell survival, cell proliferation, migration and differentiation. Ligand binding at the cell surface induces dimerization and autophosphorylation of AXL. Following activation by ligand, AXL binds and induces tyrosine phosphorylation of PI3-kinase subunits PIK3R1, PIK3R2 and PIK3R3; but also GRB2, PLCG1, LCK and PTPN11. Other downstream substrate candidates for AXL are CBL, NCK2, SOCS1 and TNS2. Recruitment of GRB2 and phosphatidylinositol 3 kinase regulatory subunits by AXL leads to the downstream activation of the AKT kinase. GAS6/AXL signaling plays a role in various processes such as endothelial cell survival during acidification by preventing apoptosis, optimal cytokine signaling during human natural killer cell development, hepatic regeneration, gonadotropin-releasing hormone neuron survival and migration, platelet activation, or regulation of thrombotic responses. Also plays an important role in inhibition of Toll-like receptors (TLRs)-mediated innate immune response. {ECO:0000269|PubMed:10403904, ECO:0000269|PubMed:11484958, ECO:0000269|PubMed:12364394, ECO:0000269|PubMed:12490074, ECO:0000269|PubMed:15507525, ECO:0000269|PubMed:15733062, ECO:0000269|PubMed:1656220, ECO:0000269|PubMed:18840707}.; FUNCTION: (Microbial infection) Acts as a receptor for lassa virus and lymphocytic choriomeningitis virus, possibly through GAS6 binding to phosphatidyl-serine at the surface of virion envelope. {ECO:0000269|PubMed:17005688, ECO:0000269|PubMed:21501828, ECO:0000269|PubMed:22156524, ECO:0000269|PubMed:25277499}.; FUNCTION: (Microbial infection) Acts as a receptor for Ebolavirus, possibly through GAS6 binding to phosphatidyl-serine at the surface of virion envelope. {ECO:0000269|PubMed:22673088}.; FUNCTION: (Microbial infection) Promotes Zika virus entry in glial cells, Sertoli cells and astrocytes (PubMed:28076778, PubMed:29379210, PubMed:31311882). Additionally, Zika virus potentiates AXL kinase activity to antagonize type I interferon signaling and thereby promotes infection (PubMed:28076778). Interferon signaling inhibition occurs via an SOCS1-dependent mechanism (PubMed:29379210). {ECO:0000269|PubMed:28076778, ECO:0000269|PubMed:29379210, ECO:0000269|PubMed:31311882}.FUNCTION: Transcription factor that acts as a repressor. {ECO:0000269|PubMed:27412763}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.

check button - Retained domain in the 5'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


check button - Retained domain in the 3'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


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Kinase-Substrate Information of AXL_DPRX


check button Phosphorylation target of the kinase
(phosphosite, 03-17-2024)
KinaseKinase UniProt AccKinase speciesSubstrateSubstrate UniProt AccSubstrate phosphorylated residuesSubstrate phosphorylated sites (+/-7AA)Domain
AXLP30530humanMLKLQ8NB16Y376DRVkstAyLSPQELEPK_Tyr_Ser-Thr
AXLP30530humanELMO2Q96JJ3Y713IPKEPssyDFVyHyG
AXLP30530humanAKT1P31749S473RPHFPQFsysAsGtAPkinase_C
AXLP30530humanSTAT5AP42229Y694LAkAVDGyVkPQIkQ
AXLP30530humanELMO1Q92556Y724PsNyDFVyDCN____
AXLP30530humanSTAT3P40763Y705DPGsAAPyLktKFIC
AXLP30530humanLCKP06239Y394RLIEDNEytAREGAkPK_Tyr_Ser-Thr
AXLP30530humanFYNP06241Y420RLIEDNEytARQGAkPK_Tyr_Ser-Thr
AXLP30530humanELMO1Q92556Y720IPKEPsNyDFVyDCN
AXLP30530humanLYNP07948Y397RVIEDNEytAREGAkPK_Tyr_Ser-Thr
AXLP30530humanHCKP08631Y411RVIEDNEytAREGAkPK_Tyr_Ser-Thr
AXLP30530humanSTAT5BP51692Y699tAkAVDGyVkPQIkQ
AXLP30530humanSRCP12931Y419RLIEDNEytARQGAkPK_Tyr_Ser-Thr
AXLP30530humanYES1P07947Y426RLIEDNEytARQGAkPK_Tyr_Ser-Thr
AXLP30530humanAKT1P31749T308kDGAtMKtFCGtPEyPkinase


check button Biological Network Integration of This Kinase and Substrates
(GeneMANIA website)

check button Enriched GO biological processes of the phosphorylation target genes of the kinase
KinaseGOIDGO termP.adjust
AXLIDDescription0.00e+00
AXLGO:0038094Fc-gamma receptor signaling pathway3.80e-11
AXLGO:0031295T cell costimulation1.81e-10
AXLGO:0031294lymphocyte costimulation1.81e-10
AXLGO:0038093Fc receptor signaling pathway2.77e-10
AXLGO:0002433immune response-regulating cell surface receptor signaling pathway involved in phagocytosis8.89e-10
AXLGO:0038096Fc-gamma receptor signaling pathway involved in phagocytosis8.89e-10
AXLGO:0002431Fc receptor mediated stimulatory signaling pathway2.33e-09
AXLGO:0002862negative regulation of inflammatory response to antigenic stimulus2.40e-09
AXLGO:0060397growth hormone receptor signaling pathway via JAK-STAT3.99e-09
AXLGO:0060416response to growth hormone4.05e-09
AXLGO:0050900leukocyte migration4.74e-09
AXLGO:0006909phagocytosis7.66e-09
AXLGO:0050870positive regulation of T cell activation9.84e-09
AXLGO:0002861regulation of inflammatory response to antigenic stimulus9.84e-09
AXLGO:1903039positive regulation of leukocyte cell-cell adhesion1.74e-08
AXLGO:0031348negative regulation of defense response4.62e-08
AXLGO:0022409positive regulation of cell-cell adhesion4.62e-08
AXLGO:0051251positive regulation of lymphocyte activation5.17e-08
AXLGO:0002437inflammatory response to antigenic stimulus1.01e-07
AXLGO:0060396growth hormone receptor signaling pathway1.03e-07
AXLGO:1901653cellular response to peptide1.03e-07
AXLGO:0002696positive regulation of leukocyte activation1.03e-07
AXLGO:0050863regulation of T cell activation1.03e-07
AXLGO:0071378cellular response to growth hormone stimulus1.03e-07
AXLGO:1903037regulation of leukocyte cell-cell adhesion1.03e-07
AXLGO:0050728negative regulation of inflammatory response1.10e-07
AXLGO:0050777negative regulation of immune response1.15e-07
AXLGO:0050867positive regulation of cell activation1.18e-07
AXLGO:0007159leukocyte cell-cell adhesion1.69e-07
AXLGO:0050727regulation of inflammatory response1.80e-07
AXLGO:0032102negative regulation of response to external stimulus4.04e-07
AXLGO:0045785positive regulation of cell adhesion4.04e-07
AXLGO:0022407regulation of cell-cell adhesion4.57e-07
AXLGO:0018108peptidyl-tyrosine phosphorylation5.43e-07
AXLGO:0018212peptidyl-tyrosine modification5.51e-07
AXLGO:0052548regulation of endopeptidase activity6.61e-07
AXLGO:0071375cellular response to peptide hormone stimulus9.97e-07
AXLGO:0052547regulation of peptidase activity1.01e-06
AXLGO:0048013ephrin receptor signaling pathway1.07e-06
AXLGO:0002429immune response-activating cell surface receptor signaling pathway1.07e-06
AXLGO:0070669response to interleukin-21.30e-06
AXLGO:0070672response to interleukin-151.65e-06
AXLGO:0002768immune response-regulating cell surface receptor signaling pathway1.65e-06
AXLGO:0045862positive regulation of proteolysis1.72e-06
AXLGO:0007259receptor signaling pathway via JAK-STAT2.14e-06
AXLGO:0097696receptor signaling pathway via STAT3.09e-06
AXLGO:0046777protein autophosphorylation4.01e-06
AXLGO:0045088regulation of innate immune response4.98e-06
AXLGO:0043434response to peptide hormone5.23e-06

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Related Drugs to AXL_DPRX


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

check button Distribution of the number of studies mentioning AXL-DPRX and kinase inhibitors the PubMed Abstract (04-01-2024)

Fusion gene - drug pair 1Fusion gene - drug pair 2PMIDPublication dateDOIStudy title

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Related Diseases to AXL_DPRX


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Related diseases from the literature mentioned this fusion gene and drug.
(PubMed, 04-01-2024)
MeSH IDMeSH term

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource


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Clinical Trials of the Found Drugs/Small Molecules


check button Statistics of the Clinical Trials of the Found Kinase Inibitors from clinicaltrials.gov (06-17-2024)

check button Clinical Trials from clinicaltrials.gov (06-17-2024)

Fusion GeneKinase InhibitorNCT IDStudy StatusPhasesDisease# EnrolmentDate