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Center for Computational Systems Medicine
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Kinase Fusion Gene Summary

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Kinase Fusion Gene Sample Information

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Kinase Fusion ORF Analysis

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Kinase Fusion Amino Acid Sequences

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Multiple Sequence Alignment of All Fusion Protein Isoforms

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Kinase Fusion Protein Functional Features

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Kinase Fusion Protein Structures

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Comparison of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

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pLDDT Scores and Difference Analysis of pLDDT Scores Between the Active Sites (Best) and Non-Active Sites.

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Ramachandran Plot of Kinase Fusion Protein Structure

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Potential Active Site Information

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Virtual Screening Results

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Kinase-Substrate Information

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Related Drugs with This Kinase Fusion Protein

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Related Disease with This Kinase Fusion Protein

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Clinical Trials of the Found Drugs/Small Molecules

Kinase Fusion Gene:BLK_CD99

Kinase Fusion Protein Summary

check button Kinase Fusion gene summary
Kinase Fusion partner gene informationKinase Fusion gene name: BLK_CD99
KinaseFusionDB ID: KFG622
FusionGDB2.0 ID: KFG622
HgeneTgene
Gene symbol

BLK

CD99

Gene ID

640

4267

Gene nameBLK proto-oncogene, Src family tyrosine kinaseCD99 molecule (Xg blood group)
SynonymsMODY11HBA71|MIC2|MIC2X|MIC2Y|MSK5X
Cytomap

8p23.1

X;Y

Type of geneprotein-codingprotein-coding
Descriptiontyrosine-protein kinase BlkB lymphoid tyrosine kinaseBLK nonreceptor tyrosine kinaseb lymphocyte kinasep55-BlkCD99 antigenE2 antigenMIC2 (monoclonal antibody 12E7)T-cell surface glycoprotein E2antigen identified by monoclonal 12E7, Y homologantigen identified by monoclonal antibodies 12E7, F21 and O13cell surface antigen 12E7cell surface antigen HBA-71cel
Modification date2024041120240411
UniProtAcc

P51451

Q8TCZ2

Ensembl transtripts involved in fusion geneENST idsENST00000259089, ENST00000529894, 
ENST00000525389, 
ENST00000381192, 
ENST00000381187, ENST00000381184, 
ENST00000482405, ENST00000381180, 
Context (manual curation of fusion genes in KinaseFusionDB)

PubMed: BLK [Title/Abstract] AND CD99 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)
check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneBLK

GO:0018108

peptidyl-tyrosine phosphorylation

30356214

HgeneBLK

GO:0050853

B cell receptor signaling pathway

876631


check buttonKinase Fusion gene breakpoints across BLK (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonKinase Fusion gene breakpoints across CD99 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.


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Kinase Fusion Gene Sample Information

check buttonKinase Fusion gene information.
check button Kinase Fusion gene information from four resources (ChiTars 5.0, ChimerDB 4.0, COSMIC, and CCLE)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceSampleHgeneHchrHbpTgeneTchrTbp
CCLEWSU-DLCL2BLKchr8

11421665

CD99chrX

2638404



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Kinase Fusion ORF Analysis


check buttonKinase Fusion information from ORFfinder translation from full-length transcript sequence from KinaseFusionDB.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(amino acids)

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Kinase Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from KinaseFusionDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>Henst_Tenst_Hgene_Hchr_Hbp_Tgene_Tchr_Tbp_length(fusion AA)_AAseq

Multiple Sequence Alignment of All Fusion Protein Isoforms



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Kinase Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:/:)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BLK

P51451

CD99

Q8TCZ2

FUNCTION: Non-receptor tyrosine kinase involved in B-lymphocyte development, differentiation and signaling (By similarity). B-cell receptor (BCR) signaling requires a tight regulation of several protein tyrosine kinases and phosphatases, and associated coreceptors (By similarity). Binding of antigen to the B-cell antigen receptor (BCR) triggers signaling that ultimately leads to B-cell activation (By similarity). Signaling through BLK plays an important role in transmitting signals through surface immunoglobulins and supports the pro-B to pre-B transition, as well as the signaling for growth arrest and apoptosis downstream of B-cell receptor (By similarity). Specifically binds and phosphorylates CD79A at 'Tyr-188'and 'Tyr-199', as well as CD79B at 'Tyr-196' and 'Tyr-207' (By similarity). Phosphorylates also the immunoglobulin G receptors FCGR2A, FCGR2B and FCGR2C (PubMed:8756631). With FYN and LYN, plays an essential role in pre-B-cell receptor (pre-BCR)-mediated NF-kappa-B activation (By similarity). Contributes also to BTK activation by indirectly stimulating BTK intramolecular autophosphorylation (By similarity). In pancreatic islets, acts as a modulator of beta-cells function through the up-regulation of PDX1 and NKX6-1 and consequent stimulation of insulin secretion in response to glucose (PubMed:19667185). Phosphorylates CGAS, promoting retention of CGAS in the cytosol (PubMed:30356214). {ECO:0000250|UniProtKB:P16277, ECO:0000269|PubMed:19667185, ECO:0000269|PubMed:30356214, ECO:0000269|PubMed:8756631}.FUNCTION: Plays a role in a late step of leukocyte extravasation helping cells to overcome the endothelial basement membrane. Acts at the same site as, but independently of, PECAM1 (By similarity). Homophilic adhesion molecule, but these interactions may not be required for cell aggregation (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.

check button - Retained domain in the 5'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


check button - Retained domain in the 3'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


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Kinase-Substrate Information of BLK_CD99


check button Phosphorylation target of the kinase
(phosphosite, 03-17-2024)
KinaseKinase UniProt AccKinase speciesSubstrateSubstrate UniProt AccSubstrate phosphorylated residuesSubstrate phosphorylated sites (+/-7AA)Domain
BLKP51451humanFAM83AQ86UY5Y138EKssAtVyFQtVKHNFAM83
BLKP51451humanFCGR2AP12318Y304tDDDKNIyLTLPPND
BLKP51451humanFCGR2BP31994Y292GAENTITysLLMHPD
BLKP51451humanFCGR2AP12318Y288yEtADGGyMtLNPRA
BLKP51451humanSOCS1O15524Y80LLDACGFyWGPLSVHSH2
BLKP51451humanCGASQ8N884Y215LLNTGSYyEHVKIsAMab-21
BLKP51451humanFCGR2CP31995Y310tDDDKNIyLTLPPND


check button Biological Network Integration of This Kinase and Substrates
(GeneMANIA website)

check button Enriched GO biological processes of the phosphorylation target genes of the kinase
KinaseGOIDGO termP.adjust
BLKIDDescription0.00e+00
BLKGO:0050863regulation of T cell activation4.05e-02
BLKGO:0002637regulation of immunoglobulin production4.05e-02
BLKGO:1902106negative regulation of leukocyte differentiation4.08e-02
BLKGO:1903707negative regulation of hemopoiesis4.08e-02
BLKGO:0050868negative regulation of T cell activation4.08e-02
BLKGO:1903038negative regulation of leukocyte cell-cell adhesion4.08e-02
BLKGO:0051250negative regulation of lymphocyte activation4.08e-02
BLKGO:0002700regulation of production of molecular mediator of immune response4.08e-02
BLKGO:0002377immunoglobulin production4.08e-02
BLKGO:0002695negative regulation of leukocyte activation4.08e-02
BLKGO:0022408negative regulation of cell-cell adhesion4.08e-02
BLKGO:0050777negative regulation of immune response4.08e-02
BLKGO:0050866negative regulation of cell activation4.08e-02
BLKGO:0001915negative regulation of T cell mediated cytotoxicity4.08e-02
BLKGO:0002883regulation of hypersensitivity4.08e-02
BLKGO:0010721negative regulation of cell development4.08e-02
BLKGO:0002604regulation of dendritic cell antigen processing and presentation4.08e-02
BLKGO:0002887negative regulation of myeloid leukocyte mediated immunity4.08e-02
BLKGO:0002924negative regulation of humoral immune response mediated by circulating immunoglobulin4.08e-02
BLKGO:0042532negative regulation of tyrosine phosphorylation of STAT protein4.08e-02
BLKGO:0007162negative regulation of cell adhesion4.08e-02
BLKGO:0002440production of molecular mediator of immune response4.08e-02
BLKGO:0002638negative regulation of immunoglobulin production4.08e-02
BLKGO:0002674negative regulation of acute inflammatory response4.08e-02
BLKGO:0043301negative regulation of leukocyte degranulation4.08e-02
BLKGO:1902950regulation of dendritic spine maintenance4.08e-02
BLKGO:2001198regulation of dendritic cell differentiation4.08e-02
BLKGO:0031348negative regulation of defense response4.08e-02
BLKGO:1902105regulation of leukocyte differentiation4.08e-02
BLKGO:0002524hypersensitivity4.08e-02
BLKGO:0002468dendritic cell antigen processing and presentation4.08e-02
BLKGO:0043374CD8-positiv4.76e-03
BLKGO:0002713negative regulation of B cell mediated immunity4.08e-02
BLKGO:0002864regulation of acute inflammatory response to antigenic stimulus4.08e-02
BLKGO:0002890negative regulation of immunoglobulin mediated immune response4.08e-02
BLKGO:0002921negative regulation of humoral immune response4.08e-02
BLKGO:0030889negative regulation of B cell proliferation4.08e-02
BLKGO:0071360cellular response to exogenous dsRNA4.08e-02
BLKGO:1901653cellular response to peptide4.08e-02
BLKGO:0002923regulation of humoral immune response mediated by circulating immunoglobulin4.08e-02
BLKGO:1903037regulation of leukocyte cell-cell adhesion4.08e-02
BLKGO:0002697regulation of immune effector process4.08e-02
BLKGO:0043031negative regulation of macrophage activation4.08e-02
BLKGO:2000774positive regulation of cellular senescence4.08e-02
BLKGO:0002577regulation of antigen processing and presentation4.08e-02
BLKGO:0050765negative regulation of phagocytosis4.08e-02
BLKGO:2001185regulation of CD8-positiv6.66e-03
BLKGO:0007159leukocyte cell-cell adhesion4.08e-02
BLKGO:0097062dendritic spine maintenance4.08e-02

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Related Drugs to BLK_CD99


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

check button Distribution of the number of studies mentioning BLK-CD99 and kinase inhibitors the PubMed Abstract (04-01-2024)

Fusion gene - drug pair 1Fusion gene - drug pair 2PMIDPublication dateDOIStudy title

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Related Diseases to BLK_CD99


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Related diseases from the literature mentioned this fusion gene and drug.
(PubMed, 04-01-2024)
MeSH IDMeSH term

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource


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Clinical Trials of the Found Drugs/Small Molecules


check button Statistics of the Clinical Trials of the Found Kinase Inibitors from clinicaltrials.gov (06-17-2024)

check button Clinical Trials from clinicaltrials.gov (06-17-2024)

Fusion GeneKinase InhibitorNCT IDStudy StatusPhasesDisease# EnrolmentDate