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Center for Computational Systems Medicine
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Kinase Fusion Gene Summary

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Kinase Fusion Gene Sample Information

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Kinase Fusion ORF Analysis

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Kinase Fusion Amino Acid Sequences

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Multiple Sequence Alignment of All Fusion Protein Isoforms

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Kinase Fusion Protein Functional Features

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Kinase Fusion Protein Structures

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Comparison of Fusion Protein Isoforms

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Comparison of Fusion Protein Sequences/Structures with Known Sequences/Structures from PDB

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pLDDT Scores and Difference Analysis of pLDDT Scores Between the Active Sites (Best) and Non-Active Sites.

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Ramachandran Plot of Kinase Fusion Protein Structure

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Potential Active Site Information

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Virtual Screening Results

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Kinase-Substrate Information

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Related Drugs with This Kinase Fusion Protein

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Related Disease with This Kinase Fusion Protein

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Clinical Trials of the Found Drugs/Small Molecules

Kinase Fusion Gene:CAMKK2_KCNK5

Kinase Fusion Protein Summary

check button Kinase Fusion gene summary
Kinase Fusion partner gene informationKinase Fusion gene name: CAMKK2_KCNK5
KinaseFusionDB ID: KFG897
FusionGDB2.0 ID: KFG897
HgeneTgene
Gene symbol

CAMKK2

KCNK5

Gene ID

10645

8645

Gene namecalcium/calmodulin dependent protein kinase kinase 2potassium two pore domain channel subfamily K member 5
SynonymsCAMKK|CAMKKBK2p5.1|KCNK5b|TASK-2|TASK2
Cytomap

12q24.31

6p21.2

Type of geneprotein-codingprotein-coding
Descriptioncalcium/calmodulin-dependent protein kinase kinase 2CAMKK beta proteincaM-KK 2caM-KK betacaM-kinase kinase 2caM-kinase kinase betacalcium/calmodulin-dependent protein kinase betacalcium/calmodulin-dependent protein kinase kinase 2, betapotassium channel subfamily K member 5K2P5.1 potassium channelTWIK-related acid-sensitive K(+) channel 2TWIK-related acid-sensitive K+ 2TWIK-related acid-sensitive K+ channel 2acid-sensitive potassium channel protein TASK-2potassium channel, subfami
Modification date2024040320240411
UniProtAcc

Q96RR4

O95279

Ensembl transtripts involved in fusion geneENST idsENST00000324774, ENST00000337174, 
ENST00000347034, ENST00000392473, 
ENST00000392474, ENST00000402834, 
ENST00000404169, ENST00000412367, 
ENST00000446440, ENST00000535524, 
ENST00000538733, ENST00000545538, 
ENST00000359534, 
Context (manual curation of fusion genes in KinaseFusionDB)

PubMed: CAMKK2 [Title/Abstract] AND KCNK5 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)CAMKK2(121677140)-KCNK5(39197059), # samples:1
check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCAMKK2

GO:0006468

protein phosphorylation

11395482

HgeneCAMKK2

GO:0046777

protein autophosphorylation

11395482

TgeneKCNK5

GO:0006813

potassium ion transport

9812978


check buttonKinase Fusion gene breakpoints across CAMKK2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonKinase Fusion gene breakpoints across KCNK5 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.


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Kinase Fusion Gene Sample Information

check buttonKinase Fusion gene information.
check button Kinase Fusion gene information from four resources (ChiTars 5.0, ChimerDB 4.0, COSMIC, and CCLE)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceSampleHgeneHchrHbpTgeneTchrTbp
ChiTaRS5.0BM836721CAMKK2chr12

121677140

KCNK5chr6

39197059



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Kinase Fusion ORF Analysis


check buttonKinase Fusion information from ORFfinder translation from full-length transcript sequence from KinaseFusionDB.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(amino acids)

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Kinase Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from KinaseFusionDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>Henst_Tenst_Hgene_Hchr_Hbp_Tgene_Tchr_Tbp_length(fusion AA)_AAseq

Multiple Sequence Alignment of All Fusion Protein Isoforms



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Kinase Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:121677140/:39197059)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CAMKK2

Q96RR4

KCNK5

O95279

FUNCTION: Calcium/calmodulin-dependent protein kinase belonging to a proposed calcium-triggered signaling cascade involved in a number of cellular processes. Isoform 1, isoform 2 and isoform 3 phosphorylate CAMK1 and CAMK4. Isoform 3 phosphorylates CAMK1D. Isoform 4, isoform 5 and isoform 6 lacking part of the calmodulin-binding domain are inactive. Efficiently phosphorylates 5'-AMP-activated protein kinase (AMPK) trimer, including that consisting of PRKAA1, PRKAB1 and PRKAG1. This phosphorylation is stimulated in response to Ca(2+) signals (By similarity). Seems to be involved in hippocampal activation of CREB1 (By similarity). May play a role in neurite growth. Isoform 3 may promote neurite elongation, while isoform 1 may promoter neurite branching. {ECO:0000250, ECO:0000269|PubMed:11395482, ECO:0000269|PubMed:12935886, ECO:0000269|PubMed:21957496, ECO:0000269|PubMed:9662074}.FUNCTION: pH-dependent, outwardly rectifying potassium channel (PubMed:9812978). Outward rectification is lost at high external K(+) concentrations (PubMed:9812978). {ECO:0000269|PubMed:9812978}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.

check button - Retained domain in the 5'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


check button - Retained domain in the 3'-partner of fusion protein (protein functional feature from UniProt).
PartnerHgeneeneHbpTgeneeneTbpENSTBPexonTotalExonProtein feature lociBPlociTotalLenFeatureNote


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Kinase-Substrate Information of CAMKK2_KCNK5


check button Phosphorylation target of the kinase
(phosphosite, 03-17-2024)
KinaseKinase UniProt AccKinase speciesSubstrateSubstrate UniProt AccSubstrate phosphorylated residuesSubstrate phosphorylated sites (+/-7AA)Domain
CAMKK2Q96RR4humanSIRT1Q96EB6S47DGPGLERsPGEPGGA
CAMKK2Q96RR4humanPRKAA1Q13131T183sDGEFLRtsCGsPNyPkinase
CAMKK2Q96RR4humanSIRT1Q96EB6S27ADREAAssPAGEPLR
CAMKK2Q96RR4humanCAMKK2Q96RR4T85GQEVPLDtSGSQARP
CAMKK2Q96RR4humanPRKAA2P54646T172sDGEFLRtsCGsPNyPkinase
CAMKK2Q96RR4humanAKT1P31749T308kDGAtMKtFCGtPEyPkinase


check button Biological Network Integration of This Kinase and Substrates
(GeneMANIA website)

check button Enriched GO biological processes of the phosphorylation target genes of the kinase
KinaseGOIDGO termP.adjust
CAMKK2IDDescription0.00e+00
CAMKK2GO:0034599cellular response to oxidative stress3.92e-07
CAMKK2GO:0062197cellular response to chemical stress4.74e-07
CAMKK2GO:0045913positive regulation of carbohydrate metabolic process4.74e-07
CAMKK2GO:0010506regulation of autophagy5.19e-07
CAMKK2GO:1901655cellular response to ketone6.30e-07
CAMKK2GO:0006979response to oxidative stress6.30e-07
CAMKK2GO:0071380cellular response to prostaglandin E stimulus6.46e-07
CAMKK2GO:0055089fatty acid homeostasis6.86e-07
CAMKK2GO:0071379cellular response to prostaglandin stimulus1.19e-06
CAMKK2GO:0032006regulation of TOR signaling1.33e-06
CAMKK2GO:0062013positive regulation of small molecule metabolic process1.33e-06
CAMKK2GO:0034695response to prostaglandin E1.33e-06
CAMKK2GO:0010508positive regulation of autophagy1.33e-06
CAMKK2GO:0034614cellular response to reactive oxygen species1.37e-06
CAMKK2GO:2000756regulation of peptidyl-lysine acetylation1.66e-06
CAMKK2GO:0031929TOR signaling1.66e-06
CAMKK2GO:0034694response to prostaglandin2.35e-06
CAMKK2GO:0006109regulation of carbohydrate metabolic process2.38e-06
CAMKK2GO:0090311regulation of protein deacetylation2.78e-06
CAMKK2GO:0000302response to reactive oxygen species3.03e-06
CAMKK2GO:1901654response to ketone3.06e-06
CAMKK2GO:1901983regulation of protein acetylation4.20e-06
CAMKK2GO:0042593glucose homeostasis5.80e-06
CAMKK2GO:0033500carbohydrate homeostasis5.80e-06
CAMKK2GO:0042149cellular response to glucose starvation6.31e-06
CAMKK2GO:0006476protein deacetylation9.55e-06
CAMKK2GO:0035601protein deacylation1.43e-05
CAMKK2GO:0018394peptidyl-lysine acetylation1.44e-05
CAMKK2GO:0098732macromolecule deacylation1.49e-05
CAMKK2GO:0062012regulation of small molecule metabolic process1.49e-05
CAMKK2GO:0032007negative regulation of TOR signaling1.68e-05
CAMKK2GO:0097009energy homeostasis1.91e-05
CAMKK2GO:0031331positive regulation of cellular catabolic process2.58e-05
CAMKK2GO:0006631fatty acid metabolic process2.63e-05
CAMKK2GO:1903432regulation of TORC1 signaling2.98e-05
CAMKK2GO:0038202TORC1 signaling3.41e-05
CAMKK2GO:0031400negative regulation of protein modification process3.41e-05
CAMKK2GO:0097306cellular response to alcohol3.73e-05
CAMKK2GO:0006473protein acetylation3.97e-05
CAMKK2GO:0045833negative regulation of lipid metabolic process4.57e-05
CAMKK2GO:0031667response to nutrient levels5.06e-05
CAMKK2GO:0032070regulation of deoxyribonuclease activity5.19e-05
CAMKK2GO:1903943regulation of hepatocyte apoptotic process5.19e-05
CAMKK2GO:1904179positive regulation of adipose tissue development5.19e-05
CAMKK2GO:0008286insulin receptor signaling pathway5.65e-05
CAMKK2GO:0099004calmodulin dependent kinase signaling pathway6.07e-05
CAMKK2GO:0043467regulation of generation of precursor metabolites and energy7.45e-05
CAMKK2GO:1903008organelle disassembly8.46e-05
CAMKK2GO:0043543protein acylation8.46e-05

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Related Drugs to CAMKK2_KCNK5


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

check button Distribution of the number of studies mentioning CAMKK2-KCNK5 and kinase inhibitors the PubMed Abstract (04-01-2024)

Fusion gene - drug pair 1Fusion gene - drug pair 2PMIDPublication dateDOIStudy title

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Related Diseases to CAMKK2_KCNK5


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Related diseases from the literature mentioned this fusion gene and drug.
(PubMed, 04-01-2024)
MeSH IDMeSH term

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource


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Clinical Trials of the Found Drugs/Small Molecules


check button Statistics of the Clinical Trials of the Found Kinase Inibitors from clinicaltrials.gov (06-17-2024)

check button Clinical Trials from clinicaltrials.gov (06-17-2024)

Fusion GeneKinase InhibitorNCT IDStudy StatusPhasesDisease# EnrolmentDate