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Fusion Protein:DNAJC3-STK24 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: DNAJC3-STK24 | FusionPDB ID: 23546 | FusionGDB2.0 ID: 23546 | Hgene | Tgene | Gene symbol | DNAJC3 | STK24 | Gene ID | 5611 | 8428 |
Gene name | DnaJ heat shock protein family (Hsp40) member C3 | serine/threonine kinase 24 | |
Synonyms | ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK) | HEL-S-95|MST3|MST3B|STE20|STK3 | |
Cytomap | 13q32.1 | 13q32.2 | |
Type of gene | protein-coding | protein-coding | |
Description | dnaJ homolog subfamily C member 3DnaJ (Hsp40) homolog, subfamily C, member 3ER-resident protein ERdj6endoplasmic reticulum DNA J domain-containing protein 6interferon-induced, double-stranded RNA-activated protein kinase inhibitorprotein kinase inhib | serine/threonine-protein kinase 24STE20-like kinase 3STE20-like kinase MST3epididymis secretory protein Li 95mammalian STE20-like protein kinase 3serine/threonine kinase 24 (STE20 homolog, yeast)sterile 20-like kinase 3 | |
Modification date | 20200329 | 20200313 | |
UniProtAcc | Q13217 Main function of 5'-partner protein: FUNCTION: Involved in the unfolded protein response (UPR) during endoplasmic reticulum (ER) stress. Acts as a negative regulator of the EIF2AK4/GCN2 kinase activity by preventing the phosphorylation of eIF-2-alpha at 'Ser-52' and hence attenuating general protein synthesis under ER stress, hypothermic and amino acid starving stress conditions (By similarity). Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity. {ECO:0000250|UniProtKB:Q27968, ECO:0000250|UniProtKB:Q91YW3, ECO:0000269|PubMed:12601012, ECO:0000269|PubMed:8576172, ECO:0000269|PubMed:9447982, ECO:0000269|PubMed:9920933}. | . | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000376795, ENST00000602402, | ENST00000376547, ENST00000481288, ENST00000397517, ENST00000539966, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 15 X 14 X 8=1680 | 15 X 8 X 8=960 |
# samples | 18 | 18 | |
** MAII score | log2(18/1680*10)=-3.22239242133645 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/960*10)=-2.41503749927884 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: DNAJC3 [Title/Abstract] AND STK24 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: DNAJC3 [Title/Abstract] AND STK24 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | DNAJC3(96377506)-STK24(99118815), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | DNAJC3-STK24 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. DNAJC3-STK24 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. DNAJC3-STK24 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. DNAJC3-STK24 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | STK24 | GO:0006468 | protein phosphorylation | 19604147 |
Tgene | STK24 | GO:0042542 | response to hydrogen peroxide | 22291017 |
Tgene | STK24 | GO:0046777 | protein autophosphorylation | 17046825|17657516 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr13:96377506/chr13:99118815) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000602402 | DNAJC3 | chr13 | 96377506 | + | ENST00000397517 | STK24 | chr13 | 99118815 | - | 4181 | 510 | 45 | 1208 | 387 |
ENST00000602402 | DNAJC3 | chr13 | 96377506 | + | ENST00000539966 | STK24 | chr13 | 99118815 | - | 1467 | 510 | 45 | 1208 | 387 |
ENST00000376795 | DNAJC3 | chr13 | 96377506 | + | ENST00000397517 | STK24 | chr13 | 99118815 | - | 4162 | 491 | 26 | 1189 | 387 |
ENST00000376795 | DNAJC3 | chr13 | 96377506 | + | ENST00000539966 | STK24 | chr13 | 99118815 | - | 1448 | 491 | 26 | 1189 | 387 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000602402 | ENST00000397517 | DNAJC3 | chr13 | 96377506 | + | STK24 | chr13 | 99118815 | - | 0.000725482 | 0.99927455 |
ENST00000602402 | ENST00000539966 | DNAJC3 | chr13 | 96377506 | + | STK24 | chr13 | 99118815 | - | 0.002944864 | 0.9970552 |
ENST00000376795 | ENST00000397517 | DNAJC3 | chr13 | 96377506 | + | STK24 | chr13 | 99118815 | - | 0.000700089 | 0.9992999 |
ENST00000376795 | ENST00000539966 | DNAJC3 | chr13 | 96377506 | + | STK24 | chr13 | 99118815 | - | 0.002620955 | 0.99737906 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for DNAJC3-STK24 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
DNAJC3 | chr13 | 96377506 | STK24 | chr13 | 99118815 | 491 | 155 | GKLDEAEDDFKKVADIWSLGITAIEL |
DNAJC3 | chr13 | 96377506 | STK24 | chr13 | 99118815 | 510 | 155 | GKLDEAEDDFKKVADIWSLGITAIEL |
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Potential FusionNeoAntigen Information of DNAJC3-STK24 in HLA I |
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DNAJC3-STK24_96377506_99118815.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B45:01 | AEDDFKKVA | 0.9991 | 0.9597 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B50:02 | AEDDFKKVA | 0.9987 | 0.7656 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B27:07 | KKVADIWSL | 0.9909 | 0.5372 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B39:01 | KKVADIWSL | 0.9734 | 0.7307 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B44:05 | AEDDFKKVA | 0.8835 | 0.6906 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B39:13 | KKVADIWSL | 0.8711 | 0.7817 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B38:01 | KKVADIWSL | 0.8711 | 0.8657 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B44:02 | AEDDFKKVA | 0.8509 | 0.5437 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B38:02 | KKVADIWSL | 0.8506 | 0.8604 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B41:01 | AEDDFKKVA | 0.4935 | 0.9694 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B50:01 | AEDDFKKVA | 0.2862 | 0.9654 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B39:13 | AEDDFKKVA | 0.2274 | 0.9891 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B50:02 | EAEDDFKKVA | 0.7643 | 0.6512 | 4 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B45:01 | EAEDDFKKVA | 0.7607 | 0.8834 | 4 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B41:01 | EAEDDFKKVA | 0.6247 | 0.9592 | 4 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C05:09 | VADIWSLGI | 0.9998 | 0.9564 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B40:06 | AEDDFKKVA | 0.9994 | 0.9615 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C08:15 | VADIWSLGI | 0.9988 | 0.9771 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C04:06 | VADIWSLGI | 0.9889 | 0.8801 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B44:10 | AEDDFKKVA | 0.9878 | 0.7887 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B44:09 | AEDDFKKVA | 0.8939 | 0.721 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C08:04 | VADIWSLGI | 0.869 | 0.9618 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C08:13 | VADIWSLGI | 0.869 | 0.9618 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B44:04 | AEDDFKKVA | 0.8202 | 0.5141 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B39:08 | AEDDFKKVA | 0.4789 | 0.9695 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C08:03 | VADIWSLGI | 0.4612 | 0.9752 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C05:01 | VADIWSLGI | 0.9998 | 0.9564 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C04:03 | VADIWSLGI | 0.9998 | 0.8636 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C08:02 | VADIWSLGI | 0.9988 | 0.9771 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C15:05 | VADIWSLGI | 0.9956 | 0.9141 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B40:04 | AEDDFKKVA | 0.994 | 0.9627 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B27:09 | KKVADIWSL | 0.9921 | 0.8021 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B27:06 | KKVADIWSL | 0.9881 | 0.783 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B39:02 | KKVADIWSL | 0.9807 | 0.7863 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B38:05 | KKVADIWSL | 0.8711 | 0.8657 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B44:22 | AEDDFKKVA | 0.8509 | 0.5437 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B41:03 | AEDDFKKVA | 0.6142 | 0.9255 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-C08:01 | VADIWSLGI | 0.4612 | 0.9752 | 12 | 21 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B48:02 | KKVADIWSL | 0.3751 | 0.8816 | 10 | 19 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B50:04 | AEDDFKKVA | 0.2862 | 0.9654 | 5 | 14 |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 | HLA-B50:05 | AEDDFKKVA | 0.2862 | 0.9654 | 5 | 14 |
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Potential FusionNeoAntigen Information of DNAJC3-STK24 in HLA II |
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![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
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Fusion breakpoint peptide structures of DNAJC3-STK24 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
1575 | EDDFKKVADIWSLG | DNAJC3 | STK24 | chr13 | 96377506 | chr13 | 99118815 | 491 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of DNAJC3-STK24 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 1575 | EDDFKKVADIWSLG | -7.86159 | -8.00559 |
HLA-B14:02 | 3BVN | 1575 | EDDFKKVADIWSLG | -7.70374 | -7.84774 |
HLA-B14:02 | 3BVN | 1575 | EDDFKKVADIWSLG | -5.76236 | -6.82826 |
HLA-B14:02 | 3BVN | 1575 | EDDFKKVADIWSLG | -5.48496 | -7.36956 |
HLA-B14:02 | 3BVN | 1575 | EDDFKKVADIWSLG | -4.75144 | -6.63604 |
HLA-B14:02 | 3BVN | 1575 | EDDFKKVADIWSLG | -3.91062 | -4.97652 |
HLA-B52:01 | 3W39 | 1575 | EDDFKKVADIWSLG | -6.80046 | -6.94446 |
HLA-B52:01 | 3W39 | 1575 | EDDFKKVADIWSLG | -5.47395 | -7.35855 |
HLA-B52:01 | 3W39 | 1575 | EDDFKKVADIWSLG | -4.32668 | -5.39258 |
HLA-A11:01 | 4UQ2 | 1575 | EDDFKKVADIWSLG | -6.47765 | -8.36225 |
HLA-A11:01 | 4UQ2 | 1575 | EDDFKKVADIWSLG | -5.81999 | -7.70459 |
HLA-A24:02 | 5HGA | 1575 | EDDFKKVADIWSLG | -8.13301 | -8.27701 |
HLA-A24:02 | 5HGA | 1575 | EDDFKKVADIWSLG | -7.21792 | -7.36192 |
HLA-A24:02 | 5HGA | 1575 | EDDFKKVADIWSLG | -6.97636 | -8.86096 |
HLA-A24:02 | 5HGA | 1575 | EDDFKKVADIWSLG | -6.97034 | -8.85494 |
HLA-A24:02 | 5HGA | 1575 | EDDFKKVADIWSLG | -6.31311 | -7.37901 |
HLA-A24:02 | 5HGA | 1575 | EDDFKKVADIWSLG | -6.07951 | -7.14541 |
HLA-B27:05 | 6PYJ | 1575 | EDDFKKVADIWSLG | -7.66483 | -7.80883 |
HLA-B27:05 | 6PYJ | 1575 | EDDFKKVADIWSLG | -5.82872 | -7.71332 |
HLA-B27:05 | 6PYJ | 1575 | EDDFKKVADIWSLG | -4.58823 | -5.65413 |
HLA-B27:05 | 6PYJ | 1575 | EDDFKKVADIWSLG | -4.52426 | -4.66826 |
HLA-B27:05 | 6PYJ | 1575 | EDDFKKVADIWSLG | -3.6945 | -5.5791 |
HLA-B44:05 | 3DX8 | 1575 | EDDFKKVADIWSLG | -6.32527 | -7.39117 |
HLA-B44:05 | 3DX8 | 1575 | EDDFKKVADIWSLG | -5.8179 | -5.9619 |
HLA-B44:05 | 3DX8 | 1575 | EDDFKKVADIWSLG | -4.67758 | -6.56218 |
HLA-A02:01 | 6TDR | 1575 | EDDFKKVADIWSLG | -5.14012 | -6.20602 |
HLA-A02:01 | 6TDR | 1575 | EDDFKKVADIWSLG | -4.21802 | -6.10262 |
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Vaccine Design for the FusionNeoAntigens of DNAJC3-STK24 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 10 | 19 | KKVADIWSL | AAAAAAGTGGCAGACATCTGGTCCCTG |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 12 | 21 | VADIWSLGI | GTGGCAGACATCTGGTCCCTGGGCATA |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 4 | 14 | EAEDDFKKVA | GAAGCAGAAGATGATTTTAAAAAAGTGGCA |
DNAJC3-STK24 | chr13 | 96377506 | chr13 | 99118815 | 5 | 14 | AEDDFKKVA | GCAGAAGATGATTTTAAAAAAGTGGCA |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
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Information of the samples that have these potential fusion neoantigens of DNAJC3-STK24 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
STAD | DNAJC3-STK24 | chr13 | 96377506 | ENST00000376795 | chr13 | 99118815 | ENST00000397517 | TCGA-HF-A5NB |
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Potential target of CAR-T therapy development for DNAJC3-STK24 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to DNAJC3-STK24 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to DNAJC3-STK24 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |