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Fusion Protein:LDLR-ZGLP1

Fusion Gene and Fusion Protein Summary

Fusion gene summary

Fusion partner gene information	Fusion gene name: LDLR-ZGLP1
	FusionPDB ID: 44420
	FusionGDB2.0 ID: 44420
		Hgene	Tgene
	Gene symbol	LDLR	ZGLP1
	Gene ID	3949	100125288
	Gene name	low density lipoprotein receptor	zinc finger GATA like protein 1
	Synonyms	FH\|FHC\|FHCL1\|LDLCQ2	GATAD3\|GLP-1\|GLP1
	Cytomap	19p13.2	19p13.2
	Type of gene	protein-coding	protein-coding
	Description	low-density lipoprotein receptorLDL receptorlow-density lipoprotein receptor class A domain-containing protein 3	GATA-type zinc finger protein 1GATA zinc finger domain containing 3GATA-like protein 1
	Modification date	20200322	20200313
	UniProtAcc	Q5SW96 Main function of 5'-partner protein: FUNCTION: Adapter protein (clathrin-associated sorting protein (CLASP)) required for efficient endocytosis of the LDL receptor (LDLR) in polarized cells such as hepatocytes and lymphocytes, but not in non-polarized cells (fibroblasts). May be required for LDL binding and internalization but not for receptor clustering in coated pits. May facilitate the endocytocis of LDLR and LDLR-LDL complexes from coated pits by stabilizing the interaction between the receptor and the structural components of the pits. May also be involved in the internalization of other LDLR family members. Binds to phosphoinositides, which regulate clathrin bud assembly at the cell surface. Required for trafficking of LRP2 to the endocytic recycling compartment which is necessary for LRP2 proteolysis, releasing a tail fragment which translocates to the nucleus and mediates transcriptional repression (By similarity). {ECO:0000250\|UniProtKB:D3ZAR1, ECO:0000269\|PubMed:15728179}.	.
Ensembl transtripts involved in fusion gene	ENST ids	ENST00000455727, ENST00000535915, ENST00000545707, ENST00000557933, ENST00000558013, ENST00000558518, ENST00000560628,	ENST00000403352, ENST00000403903,
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)	* DoF score	23 X 17 X 15=5865	4 X 9 X 4=144
	# samples	33	5
	** MAII score	log2(33/5865*10)=-4.15159317867005 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(5/144*10)=-1.52606881166759 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Fusion gene context	PubMed: LDLR [Title/Abstract] AND ZGLP1 [Title/Abstract] AND fusion [Title/Abstract]
Fusion neoantigen context	PubMed: LDLR [Title/Abstract] AND ZGLP1 [Title/Abstract] AND neoantigen [Title/Abstract]
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)	LDLR(11200291)-ZGLP1(10419067), # samples:2
Anticipated loss of major functional domain due to fusion event.	LDLR-ZGLP1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. LDLR-ZGLP1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. LDLR-ZGLP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. LDLR-ZGLP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. LDLR-ZGLP1 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. LDLR-ZGLP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. LDLR-ZGLP1 seems lost the major protein functional domain in Tgene partner, which is a transcription factor due to the frame-shifted ORF.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner

Gene

GO ID

GO term

PubMed ID

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:11200291/chr19:10419067)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Retention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

Fusion gene breakpoints across LDLR (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across ZGLP1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Fusion Amino Acid Sequences

Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	Seq length (transcript)	BP loci (transcript)	Predicted start (transcript)	Predicted stop (transcript)	Seq length (amino acids)
ENST00000558518	LDLR	chr19	11224438	+	ENST00000403352	ZGLP1	chr19	10415884	-	1907	1773	169	1890	573
ENST00000557933	LDLR	chr19	11224438	+	ENST00000403352	ZGLP1	chr19	10415884	-	1807	1673	69	1790	573
ENST00000455727	LDLR	chr19	11224438	+	ENST00000403352	ZGLP1	chr19	10415884	-	1302	1168	68	1285	405
ENST00000535915	LDLR	chr19	11224438	+	ENST00000403352	ZGLP1	chr19	10415884	-	1683	1549	68	1666	532
ENST00000545707	LDLR	chr19	11224438	+	ENST00000403352	ZGLP1	chr19	10415884	-	1425	1291	68	1408	446
ENST00000558013	LDLR	chr19	11224438	+	ENST00000403352	ZGLP1	chr19	10415884	-	1791	1657	53	1774	573
ENST00000558518	LDLR	chr19	11224437	+	ENST00000403352	ZGLP1	chr19	10415883	-	1907	1773	169	1890	573
ENST00000557933	LDLR	chr19	11224437	+	ENST00000403352	ZGLP1	chr19	10415883	-	1807	1673	69	1790	573
ENST00000455727	LDLR	chr19	11224437	+	ENST00000403352	ZGLP1	chr19	10415883	-	1302	1168	68	1285	405
ENST00000535915	LDLR	chr19	11224437	+	ENST00000403352	ZGLP1	chr19	10415883	-	1683	1549	68	1666	532
ENST00000545707	LDLR	chr19	11224437	+	ENST00000403352	ZGLP1	chr19	10415883	-	1425	1291	68	1408	446
ENST00000558013	LDLR	chr19	11224437	+	ENST00000403352	ZGLP1	chr19	10415883	-	1791	1657	53	1774	573

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	No-coding score	Coding score
ENST00000558518	ENST00000403352	LDLR	chr19	11224438	+	ZGLP1	chr19	10415884	-	0.016103107	0.98389685
ENST00000557933	ENST00000403352	LDLR	chr19	11224438	+	ZGLP1	chr19	10415884	-	0.016469566	0.98353046
ENST00000455727	ENST00000403352	LDLR	chr19	11224438	+	ZGLP1	chr19	10415884	-	0.017386675	0.98261327
ENST00000535915	ENST00000403352	LDLR	chr19	11224438	+	ZGLP1	chr19	10415884	-	0.015940597	0.98405933
ENST00000545707	ENST00000403352	LDLR	chr19	11224438	+	ZGLP1	chr19	10415884	-	0.020687504	0.97931254
ENST00000558013	ENST00000403352	LDLR	chr19	11224438	+	ZGLP1	chr19	10415884	-	0.016846169	0.9831539
ENST00000558518	ENST00000403352	LDLR	chr19	11224437	+	ZGLP1	chr19	10415883	-	0.016103107	0.98389685
ENST00000557933	ENST00000403352	LDLR	chr19	11224437	+	ZGLP1	chr19	10415883	-	0.016469566	0.98353046
ENST00000455727	ENST00000403352	LDLR	chr19	11224437	+	ZGLP1	chr19	10415883	-	0.017386675	0.98261327
ENST00000535915	ENST00000403352	LDLR	chr19	11224437	+	ZGLP1	chr19	10415883	-	0.015940597	0.98405933
ENST00000545707	ENST00000403352	LDLR	chr19	11224437	+	ZGLP1	chr19	10415883	-	0.020687504	0.97931254
ENST00000558013	ENST00000403352	LDLR	chr19	11224437	+	ZGLP1	chr19	10415883	-	0.016846169	0.9831539

Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for LDLR-ZGLP1

+/-13 AA sequence from the breakpoints of the fusion protein sequences.

Hgene	Hchr	Hbp	Tgene	Tchr	Tbp	Length(fusion protein)	BP in fusion protein	Peptide
LDLR	chr19	11224437	ZGLP1	chr19	10415883	1168	367	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224437	ZGLP1	chr19	10415883	1291	408	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224437	ZGLP1	chr19	10415883	1549	494	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224437	ZGLP1	chr19	10415883	1657	535	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224437	ZGLP1	chr19	10415883	1673	535	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224437	ZGLP1	chr19	10415883	1773	535	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224438	ZGLP1	chr19	10415884	1168	367	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224438	ZGLP1	chr19	10415884	1291	408	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224438	ZGLP1	chr19	10415884	1549	494	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224438	ZGLP1	chr19	10415884	1657	535	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224438	ZGLP1	chr19	10415884	1673	535	SKPRAIVVDPVHGYKKYGTRCSSCWL
LDLR	chr19	11224438	ZGLP1	chr19	10415884	1773	535	SKPRAIVVDPVHGYKKYGTRCSSCWL

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Potential FusionNeoAntigen Information of LDLR-ZGLP1 in HLA I

Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.

LDLR-ZGLP1_11224437_10415883.msa

Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)

Fusion gene	Hchr	Hbp	Tgene	Tchr	Tbp	HLA I	FusionNeoAntigen peptide	Binding score	Immunogenic score	Neoantigen start (at BP 13)	Neoantigen end (at BP 13)
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:25	IVVDPVHGY	0.9972	0.8925	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:01	IVVDPVHGY	0.9953	0.8613	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:08	IVVDPVHGY	0.9911	0.788	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:02	IVVDPVHGY	0.9889	0.8956	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:17	IVVDPVHGY	0.9845	0.8621	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:01	IVVDPVHGY	0.9843	0.8379	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:01	DPVHGYKKY	0.9479	0.7462	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:08	DPVHGYKKY	0.9434	0.7118	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A30:08	VVDPVHGYK	0.9359	0.7606	6	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:16	IVVDPVHGY	0.9263	0.7293	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:05	IVVDPVHGY	0.8654	0.5287	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A74:03	VVDPVHGYK	0.832	0.5498	6	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A74:11	VVDPVHGYK	0.832	0.5498	6	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A74:09	VVDPVHGYK	0.832	0.5498	6	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:03	IVVDPVHGY	0.8053	0.6946	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A32:13	IVVDPVHGY	0.1868	0.9393	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:01	AIVVDPVHGY	0.9989	0.8668	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:25	AIVVDPVHGY	0.9907	0.9377	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A80:01	AIVVDPVHGY	0.7108	0.5302	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:25	RAIVVDPVHGY	0.9998	0.8949	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:01	RAIVVDPVHGY	0.9998	0.7959	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:17	RAIVVDPVHGY	0.9986	0.8909	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:16	RAIVVDPVHGY	0.9975	0.8234	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A03:12	IVVDPVHGYKK	0.997	0.5904	5	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A03:25	IVVDPVHGYKK	0.9969	0.5538	5	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:05	IVVDPVHGY	0.9931	0.8164	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:21	IVVDPVHGY	0.9877	0.8382	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:07	IVVDPVHGY	0.9842	0.6108	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:31	IVVDPVHGY	0.9832	0.8317	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C12:16	IVVDPVHGY	0.8422	0.9464	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:04	IVVDPVHGY	0.7309	0.8857	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C07:19	IVVDPVHGY	0.6895	0.6252	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C15:04	IVVDPVHGY	0.688	0.9087	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C07:10	IVVDPVHGY	0.6854	0.9429	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C07:27	IVVDPVHGY	0.5817	0.9133	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C07:95	IVVDPVHGY	0.5271	0.5173	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C03:14	IVVDPVHGY	0.425	0.9779	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C12:12	IVVDPVHGY	0.3628	0.8462	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C06:03	IVVDPVHGY	0.3586	0.9879	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C12:04	IVVDPVHGY	0.3575	0.9887	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:07	AIVVDPVHGY	0.9964	0.6497	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:05	AIVVDPVHGY	0.9557	0.8504	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:07	RAIVVDPVHGY	0.9994	0.5795	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:05	RAIVVDPVHGY	0.9976	0.77	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C15:04	RAIVVDPVHGY	0.9976	0.9024	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A03:01	IVVDPVHGYKK	0.9969	0.5538	5	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C03:14	RAIVVDPVHGY	0.9735	0.9656	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:39	IVVDPVHGY	0.9966	0.7635	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:125	IVVDPVHGY	0.9953	0.8613	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:33	IVVDPVHGY	0.9953	0.8613	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:34	IVVDPVHGY	0.9953	0.8613	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:27	IVVDPVHGY	0.9951	0.8627	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:20	IVVDPVHGY	0.9943	0.8926	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:11	IVVDPVHGY	0.9933	0.8157	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:08	IVVDPVHGY	0.9929	0.7922	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:135	IVVDPVHGY	0.9928	0.8492	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:50	IVVDPVHGY	0.9908	0.8836	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:28	IVVDPVHGY	0.9898	0.8952	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:43	IVVDPVHGY	0.9892	0.7925	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:11	IVVDPVHGY	0.9874	0.8177	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:35	IVVDPVHGY	0.9864	0.8532	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:77	IVVDPVHGY	0.9843	0.8379	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:23	IVVDPVHGY	0.9823	0.831	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:20	IVVDPVHGY	0.9781	0.9024	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:24	IVVDPVHGY	0.9678	0.8614	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:24	DPVHGYKKY	0.9657	0.7791	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:30	IVVDPVHGY	0.9553	0.7088	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:17	IVVDPVHGY	0.9553	0.7088	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:12	IVVDPVHGY	0.952	0.8319	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C03:02	IVVDPVHGY	0.9507	0.9581	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:13	IVVDPVHGY	0.9485	0.5515	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:77	DPVHGYKKY	0.9479	0.7462	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:53	IVVDPVHGY	0.944	0.8375	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:23	DPVHGYKKY	0.9392	0.6965	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:24	IVVDPVHGY	0.9118	0.8896	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A25:01	IVVDPVHGY	0.8801	0.8602	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C07:22	IVVDPVHGY	0.8351	0.5935	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:17	DPVHGYKKY	0.8348	0.5538	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:30	DPVHGYKKY	0.8348	0.5538	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A74:01	VVDPVHGYK	0.832	0.5498	6	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C12:02	IVVDPVHGY	0.7933	0.9557	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:11	DPVHGYKKY	0.774	0.7821	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:54	IVVDPVHGY	0.7624	0.828	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B18:04	DPVHGYKKY	0.7505	0.8115	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C07:17	IVVDPVHGY	0.6936	0.9472	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C15:09	IVVDPVHGY	0.688	0.9087	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C12:03	IVVDPVHGY	0.6103	0.962	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C16:04	IVVDPVHGY	0.5072	0.9603	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B18:04	IVVDPVHGY	0.4715	0.8972	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B18:07	DPVHGYKKY	0.4406	0.724	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A32:01	IVVDPVHGY	0.3294	0.9114	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C16:01	IVVDPVHGY	0.2986	0.9663	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C16:02	IVVDPVHGY	0.223	0.9878	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B18:07	IVVDPVHGY	0.1921	0.8254	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C02:02	IVVDPVHGY	0.0719	0.9657	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C02:10	IVVDPVHGY	0.0719	0.9657	5	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:08	DPVHGYKKY	0.0624	0.6613	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:11	DPVHGYKKY	0.0562	0.663	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:43	DPVHGYKKY	0.0397	0.6691	8	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:33	AIVVDPVHGY	0.9989	0.8668	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:27	AIVVDPVHGY	0.9989	0.9021	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:34	AIVVDPVHGY	0.9989	0.8668	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:125	AIVVDPVHGY	0.9989	0.8668	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:135	AIVVDPVHGY	0.9985	0.8672	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:50	AIVVDPVHGY	0.9979	0.9062	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:35	AIVVDPVHGY	0.9958	0.8663	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:39	AIVVDPVHGY	0.9905	0.8405	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:12	AIVVDPVHGY	0.989	0.8998	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:20	AIVVDPVHGY	0.9579	0.9287	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-A25:01	AIVVDPVHGY	0.6549	0.9296	4	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:34	RAIVVDPVHGY	0.9998	0.7959	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:27	RAIVVDPVHGY	0.9998	0.8601	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:125	RAIVVDPVHGY	0.9998	0.7959	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:39	RAIVVDPVHGY	0.9998	0.7552	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:135	RAIVVDPVHGY	0.9998	0.7994	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:33	RAIVVDPVHGY	0.9998	0.7959	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:12	RAIVVDPVHGY	0.9997	0.7917	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:50	RAIVVDPVHGY	0.9997	0.8686	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B58:06	RAIVVDPVHGY	0.9995	0.6925	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B57:04	RAIVVDPVHGY	0.9993	0.7482	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:35	RAIVVDPVHGY	0.9989	0.7985	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C02:02	RAIVVDPVHGY	0.9979	0.9663	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C02:10	RAIVVDPVHGY	0.9979	0.9663	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C15:09	RAIVVDPVHGY	0.9976	0.9024	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B15:20	RAIVVDPVHGY	0.9975	0.8863	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-B35:28	RAIVVDPVHGY	0.9964	0.901	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C03:02	RAIVVDPVHGY	0.99	0.9334	3	14
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	HLA-C12:02	RAIVVDPVHGY	0.9857	0.9511	3	14

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Potential FusionNeoAntigen Information of LDLR-ZGLP1 in HLA II

LDLR-ZGLP1_11224437_10415883.msa

Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).

Fusion gene	Hchr	Hbp	Tgene	Tchr	Tbp	HLA II	FusionNeoAntigen peptide	Neoantigen start (at BP 13)	Neoantigen end (at BP 13)
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0301	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0301	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0301	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0301	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0301	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0303	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0303	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0303	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0303	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0303	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0305	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0305	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0305	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0305	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0307	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0307	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0307	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0307	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0310	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0310	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0310	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0310	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0310	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0313	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0313	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0313	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0313	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0313	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0315	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0315	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0315	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0315	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0318	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0318	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0318	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0318	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0318	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0320	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0320	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0320	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0320	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0320	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0322	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0322	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0322	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0322	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0322	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0324	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0324	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0324	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0324	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0326	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0326	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0326	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0326	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0326	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0328	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0328	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0328	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0328	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0328	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0330	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0330	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0330	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0330	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0330	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0332	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0332	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0332	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0332	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0332	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0334	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0334	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0334	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0334	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0334	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0336	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0336	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0336	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0336	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0336	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0338	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0338	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0338	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0338	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0340	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0340	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0340	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0340	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0342	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0342	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0342	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0342	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0342	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0344	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0344	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0344	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0344	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0344	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0346	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0346	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0346	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0346	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0346	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0348	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0348	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0348	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0348	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0348	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0350	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0350	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0350	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0350	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0350	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0352	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0352	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0352	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0352	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0352	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0354	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0354	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0354	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0354	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0354	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0422	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0422	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0422	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0422	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0434	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0434	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0435	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0435	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0444	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0444	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0466	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0466	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0466	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0466	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0472	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0472	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0812	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0812	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0819	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0819	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0819	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0825	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0825	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0825	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0825	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0834	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0834	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0834	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0840	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-0840	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1107	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1107	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1107	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1107	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1113	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1113	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1114	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1114	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1114	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1120	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1120	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1120	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1121	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1121	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1134	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1134	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1148	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1148	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1157	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1168	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1168	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1173	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1173	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1179	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1179	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1179	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1179	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1182	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1182	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1186	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1186	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1201	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1201	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1203	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1203	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1203	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1204	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1204	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1205	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1205	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1206	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1206	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1207	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1207	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1208	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1208	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1209	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1209	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1210	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1210	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1211	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1211	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1212	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1212	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1212	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1213	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1213	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1214	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1214	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1215	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1215	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1217	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1217	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1218	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1218	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1219	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1219	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1220	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1220	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1220	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1220	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1221	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1221	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1221	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1221	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1222	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1222	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1222	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1222	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1223	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1223	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1302	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1302	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1302	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1304	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1304	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1308	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1308	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1309	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1309	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-13101	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-13101	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1310	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1310	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1316	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1316	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1319	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1323	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1323	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1323	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1327	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1327	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1329	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1329	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1331	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1331	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1331	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1331	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1332	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1332	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1333	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1333	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1333	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1334	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1334	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1334	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1336	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1336	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1336	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1337	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1337	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1338	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1338	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1338	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1339	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1339	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1339	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1341	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1341	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1341	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1341	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1343	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1343	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1344	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1344	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1348	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1348	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1353	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1354	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1354	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1358	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1358	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1361	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1361	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1365	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1365	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1365	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1367	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1367	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1370	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1370	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1371	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1371	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1371	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1372	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1372	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1373	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1373	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1373	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1374	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1374	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1374	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1376	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1376	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1377	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1377	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1377	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1381	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1381	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1381	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1384	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1384	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1385	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1385	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1386	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1386	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1389	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1389	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1393	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1393	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1394	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1394	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1394	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1394	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1396	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1396	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1396	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1396	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1397	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1397	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1397	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1399	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1399	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1399	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1402	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1402	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1402	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1404	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1404	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1406	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1406	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1406	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1406	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1409	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1409	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1409	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1411	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1411	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1413	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1413	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1413	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1416	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1416	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1417	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1417	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1418	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1418	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1419	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1419	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1419	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1419	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1420	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1420	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1420	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1420	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1421	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1421	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1421	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1421	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1424	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1424	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1424	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1424	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1428	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1428	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1429	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1429	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1429	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1429	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1430	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1430	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1431	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1431	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1431	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1432	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1432	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1433	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1433	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1434	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1434	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1437	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1437	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1437	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1437	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1438	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1438	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1438	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1439	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1439	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1441	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1441	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1441	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1443	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1443	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1446	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1446	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1446	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1446	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1447	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1447	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1447	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1447	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1448	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1448	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1448	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1448	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1449	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1449	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1449	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1449	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1450	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1450	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1450	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1450	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1451	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1451	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1452	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1452	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1452	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1452	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1455	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1455	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1457	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1457	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1461	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1461	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1465	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1465	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1468	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1468	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1469	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1469	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1470	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1470	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1471	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1474	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1474	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1476	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1476	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1476	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1476	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1476	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1479	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1479	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1479	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1479	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1479	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1480	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1480	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1480	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1480	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1481	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1481	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1482	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1482	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1482	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1483	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1483	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1483	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1483	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1489	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1489	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1493	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1493	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1493	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1494	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1494	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1494	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1495	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1495	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1495	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1498	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1498	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1499	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1499	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1525	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1525	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1525	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB1-1525	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0101	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0101	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0101	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0101	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0104	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0104	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0104	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0104	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0105	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0105	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0105	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0105	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0108	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0108	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0108	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0108	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0109	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0109	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0109	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0109	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0111	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0111	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0111	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0111	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0112	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0112	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0112	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0112	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0113	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0113	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0113	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0113	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0114	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0114	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0114	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0114	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0114	AIVVDPVHGYKKYGT	4	19
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0201	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0201	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0201	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0204	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0204	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0204	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0204	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0205	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0205	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0209	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0209	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0213	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0213	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0214	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0214	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0216	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0216	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0219	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0219	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0221	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0221	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0222	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0222	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0224	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0224	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0224	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0301	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0301	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0301	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0303	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0303	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0303	SKPRAIVVDPVHGYK	0	15
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB3-0303	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB4-0104	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB4-0104	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0106	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0106	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0106	RAIVVDPVHGYKKYG	3	18
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0111	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0111	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0205	PRAIVVDPVHGYKKY	2	17
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0205	KPRAIVVDPVHGYKK	1	16
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1168	DRB5-0205	RAIVVDPVHGYKKYG	3	18

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Fusion breakpoint peptide structures of LDLR-ZGLP1

3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.

File name	BPseq	Hgene	Tgene	Hchr	Hbp	Tchr	Tbp	AAlen
10342	VVDPVHGYKKYGTR	LDLR	ZGLP1	chr19	11224437	chr19	10415883	1168

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of LDLR-ZGLP1

Virtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.

HLA allele	PDB ID	File name	BPseq	Docking score	Glide score
HLA-B14:02	3BVN	10342	VVDPVHGYKKYGTR	-7.15543	-7.26883
HLA-B14:02	3BVN	10342	VVDPVHGYKKYGTR	-4.77435	-5.80965
HLA-B52:01	3W39	10342	VVDPVHGYKKYGTR	-6.80875	-6.92215
HLA-B52:01	3W39	10342	VVDPVHGYKKYGTR	-4.20386	-5.23916
HLA-A11:01	4UQ2	10342	VVDPVHGYKKYGTR	-7.5194	-8.5547
HLA-A11:01	4UQ2	10342	VVDPVHGYKKYGTR	-6.9601	-7.0735
HLA-A24:02	5HGA	10342	VVDPVHGYKKYGTR	-7.52403	-7.63743
HLA-A24:02	5HGA	10342	VVDPVHGYKKYGTR	-5.82433	-6.85963
HLA-B27:05	6PYJ	10342	VVDPVHGYKKYGTR	-3.28285	-4.31815
HLA-B44:05	3DX8	10342	VVDPVHGYKKYGTR	-5.91172	-6.94702
HLA-B44:05	3DX8	10342	VVDPVHGYKKYGTR	-4.24346	-4.35686
HLA-B35:01	1A1N	10342	VVDPVHGYKKYGTR	-5.9251	-6.0385
HLA-B35:01	1A1N	10342	VVDPVHGYKKYGTR	-4.80237	-5.83767

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Vaccine Design for the FusionNeoAntigens of LDLR-ZGLP1

mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.

Fusion gene	Hchr	Hbp	Tchr	Tbp	Start in +/-13AA	End in +/-13AA	FusionNeoAntigen peptide sequence	FusionNeoAntigen RNA sequence
LDLR-ZGLP1	chr19	11224437	chr19	10415883	3	14	RAIVVDPVHGY	AAGGGCCATCGTGGTGGATCCTGTTCATGGGTA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	4	14	AIVVDPVHGY	GGCCATCGTGGTGGATCCTGTTCATGGGTA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	5	14	IVVDPVHGY	CATCGTGGTGGATCCTGTTCATGGGTA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	5	16	IVVDPVHGYKK	CATCGTGGTGGATCCTGTTCATGGGTACAAGAA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	6	15	VVDPVHGYK	CGTGGTGGATCCTGTTCATGGGTACAA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	8	17	DPVHGYKKY	GGATCCTGTTCATGGGTACAAGAAATA

mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.

Fusion gene	Hchr	Hbp	Tchr	Tbp	Start in +/-13AA	End in +/-13AA	FusionNeoAntigen peptide	FusionNEoAntigen RNA sequence
LDLR-ZGLP1	chr19	11224437	chr19	10415883	0	15	SKPRAIVVDPVHGYK	CTCCAAGCCAAGGGCCATCGTGGTGGATCCTGTTCATGGGTACAA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	1	16	KPRAIVVDPVHGYKK	CAAGCCAAGGGCCATCGTGGTGGATCCTGTTCATGGGTACAAGAA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	2	17	PRAIVVDPVHGYKKY	GCCAAGGGCCATCGTGGTGGATCCTGTTCATGGGTACAAGAAATA
LDLR-ZGLP1	chr19	11224437	chr19	10415883	3	18	RAIVVDPVHGYKKYG	AAGGGCCATCGTGGTGGATCCTGTTCATGGGTACAAGAAATACGG
LDLR-ZGLP1	chr19	11224437	chr19	10415883	4	19	AIVVDPVHGYKKYGT	GGCCATCGTGGTGGATCCTGTTCATGGGTACAAGAAATACGGCAC

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Information of the samples that have these potential fusion neoantigens of LDLR-ZGLP1

These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.

Cancer type	Fusion gene	Hchr	Hbp	Henst	Tchr	Tbp	Tenst	Sample
ACC	LDLR-ZGLP1	chr19	11224437	ENST00000455727	chr19	10415883	ENST00000403352	TCGA-OR-A5JP-01A

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Potential target of CAR-T therapy development for LDLR-ZGLP1

Predicted 3D structure. We used RoseTTAFold.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features

* Minus value of BPloci means that the break point is located before the CDS.

- In-frame and retained 'Transmembrane'.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.

Hgene

Hchr

Hbp

Henst

Tgene

Tchr

Tbp

Tenst

DeepLoc result

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Related Drugs to LDLR-ZGLP1

Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Drug

Source

PMID

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Related Diseases to LDLR-ZGLP1

Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Disease

Source

PMID

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source

	Fusion Gene and Fusion Protein Summary
	Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)
	Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)
	Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)
	Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)
	Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)
	Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)
	Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)
	Potential target of CAR-T therapy development
	Information on the samples that have these potential fusion neoantigens
	Fusion Protein Targeting Drugs - (Manual Curation)
	Fusion Protein Related diseases - (Manual Curation)