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Fusion Protein:MLLT10-DNAJC1 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: MLLT10-DNAJC1 | FusionPDB ID: 54258 | FusionGDB2.0 ID: 54258 | Hgene | Tgene | Gene symbol | MLLT10 | DNAJC1 | Gene ID | 8028 | 64215 |
Gene name | MLLT10 histone lysine methyltransferase DOT1L cofactor | DnaJ heat shock protein family (Hsp40) member C1 | |
Synonyms | AF10 | DNAJL1|ERdj1|HTJ1|MTJ1 | |
Cytomap | 10p12.31 | 10p12.31 | |
Type of gene | protein-coding | protein-coding | |
Description | protein AF-10ALL1-fused gene from chromosome 10 proteinmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10type I AF10 proteintype III AF10 prot | dnaJ homolog subfamily C member 1DnaJ (Hsp40) homolog, subfamily C, member 1DnaJ-like proteindnaJ protein homolog MTJ1 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | P55197 Main function of 5'-partner protein: FUNCTION: Probably involved in transcriptional regulation. In vitro or as fusion protein with KMT2A/MLL1 has transactivation activity. Binds to cruciform DNA. In cells, binding to unmodified histone H3 regulates DOT1L functions including histone H3 'Lys-79' dimethylation (H3K79me2) and gene activation (PubMed:26439302). {ECO:0000269|PubMed:17868029, ECO:0000269|PubMed:26439302}. | Q96DA6 Main function of 5'-partner protein: FUNCTION: Mitochondrial co-chaperone which forms a complex with prohibitins to regulate cardiolipin remodeling (By similarity). May be a component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity (By similarity). {ECO:0000250|UniProtKB:Q07914, ECO:0000250|UniProtKB:Q9CQV7}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000307729, ENST00000377059, ENST00000377072, ENST00000446906, ENST00000377091, ENST00000377100, ENST00000495130, | ENST00000376946, ENST00000483085, ENST00000376980, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 18 X 15 X 10=2700 | 12 X 9 X 6=648 |
# samples | 24 | 13 | |
** MAII score | log2(24/2700*10)=-3.49185309632968 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/648*10)=-2.31748218985617 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: MLLT10 [Title/Abstract] AND DNAJC1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: MLLT10 [Title/Abstract] AND DNAJC1 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | DNAJC1(22094909)-MLLT10(22002701), # samples:1 MLLT10(22002879)-DNAJC1(22193541), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | MLLT10-DNAJC1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. MLLT10-DNAJC1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. MLLT10-DNAJC1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. MLLT10-DNAJC1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. DNAJC1-MLLT10 seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF. DNAJC1-MLLT10 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF. DNAJC1-MLLT10 seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF. DNAJC1-MLLT10 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MLLT10 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 17868029 |
Tgene | DNAJC1 | GO:0050708 | regulation of protein secretion | 14668352 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:22094909/chr10:22002701) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000446906 | MLLT10 | chr10 | 22002879 | + | ENST00000376980 | DNAJC1 | chr10 | 22193541 | - | 3312 | 2226 | 330 | 3161 | 943 |
ENST00000377072 | MLLT10 | chr10 | 22002879 | + | ENST00000376980 | DNAJC1 | chr10 | 22193541 | - | 3360 | 2274 | 330 | 3209 | 959 |
ENST00000307729 | MLLT10 | chr10 | 22002879 | + | ENST00000376980 | DNAJC1 | chr10 | 22193541 | - | 3142 | 2056 | 160 | 2991 | 943 |
ENST00000377059 | MLLT10 | chr10 | 22002879 | + | ENST00000376980 | DNAJC1 | chr10 | 22193541 | - | 2964 | 1878 | 0 | 2813 | 937 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000446906 | ENST00000376980 | MLLT10 | chr10 | 22002879 | + | DNAJC1 | chr10 | 22193541 | - | 0.001535282 | 0.9984647 |
ENST00000377072 | ENST00000376980 | MLLT10 | chr10 | 22002879 | + | DNAJC1 | chr10 | 22193541 | - | 0.001194709 | 0.9988053 |
ENST00000307729 | ENST00000376980 | MLLT10 | chr10 | 22002879 | + | DNAJC1 | chr10 | 22193541 | - | 0.001627448 | 0.9983726 |
ENST00000377059 | ENST00000376980 | MLLT10 | chr10 | 22002879 | + | DNAJC1 | chr10 | 22193541 | - | 0.00165633 | 0.9983437 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for MLLT10-DNAJC1 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
MLLT10 | chr10 | 22002879 | DNAJC1 | chr10 | 22193541 | 1878 | 626 | AVSSAAPAVATTQDAGQFYAKYKETR |
MLLT10 | chr10 | 22002879 | DNAJC1 | chr10 | 22193541 | 2056 | 632 | AVSSAAPAVATTQDAGQFYAKYKETR |
MLLT10 | chr10 | 22002879 | DNAJC1 | chr10 | 22193541 | 2226 | 632 | AVSSAAPAVATTQDAGQFYAKYKETR |
MLLT10 | chr10 | 22002879 | DNAJC1 | chr10 | 22193541 | 2274 | 648 | AVSSAAPAVATTQDAGQFYAKYKETR |
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Potential FusionNeoAntigen Information of MLLT10-DNAJC1 in HLA I |
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MLLT10-DNAJC1_22002879_22193541.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B35:08 | TTQDAGQFY | 0.946 | 0.9122 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B15:17 | TTQDAGQFY | 0.9219 | 0.9034 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B15:17 | ATTQDAGQF | 0.9065 | 0.8867 | 9 | 18 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B15:02 | TTQDAGQFY | 0.8977 | 0.9237 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B56:01 | APAVATTQDA | 0.7999 | 0.6269 | 5 | 15 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B15:31 | TTQDAGQFY | 0.8825 | 0.9016 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C15:04 | TTQDAGQFY | 0.4721 | 0.7976 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C03:14 | TTQDAGQFY | 0.0458 | 0.9517 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B35:20 | TTQDAGQFY | 0.8766 | 0.9569 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B57:02 | ATTQDAGQF | 0.7531 | 0.9431 | 9 | 18 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B15:11 | TTQDAGQFY | 0.7469 | 0.8439 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B15:08 | TTQDAGQFY | 0.74 | 0.8486 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-A25:01 | TTQDAGQFY | 0.6061 | 0.841 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C15:09 | TTQDAGQFY | 0.4721 | 0.7976 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C03:02 | TTQDAGQFY | 0.3504 | 0.9548 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C12:02 | TTQDAGQFY | 0.1431 | 0.9538 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C16:02 | TTQDAGQFY | 0.0502 | 0.99 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C16:01 | TTQDAGQFY | 0.0151 | 0.9758 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C02:02 | TTQDAGQFY | 0.0048 | 0.9664 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-C02:10 | TTQDAGQFY | 0.0048 | 0.9664 | 10 | 19 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B55:02 | APAVATTQDA | 0.8789 | 0.618 | 5 | 15 |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 | HLA-B35:28 | TQDAGQFYAKY | 0.9907 | 0.9125 | 11 | 22 |
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Potential FusionNeoAntigen Information of MLLT10-DNAJC1 in HLA II |
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![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
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Fusion breakpoint peptide structures of MLLT10-DNAJC1 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
6517 | PAVATTQDAGQFYA | MLLT10 | DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 2056 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of MLLT10-DNAJC1 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 6517 | PAVATTQDAGQFYA | -7.4838 | -7.5956 |
HLA-B14:02 | 3BVN | 6517 | PAVATTQDAGQFYA | -3.16066 | -4.20376 |
HLA-B52:01 | 3W39 | 6517 | PAVATTQDAGQFYA | -6.93679 | -7.04859 |
HLA-B52:01 | 3W39 | 6517 | PAVATTQDAGQFYA | -6.10064 | -7.14374 |
HLA-A11:01 | 4UQ2 | 6517 | PAVATTQDAGQFYA | -7.21307 | -7.32487 |
HLA-A24:02 | 5HGA | 6517 | PAVATTQDAGQFYA | -6.56769 | -6.67949 |
HLA-A24:02 | 5HGA | 6517 | PAVATTQDAGQFYA | -4.65311 | -5.69621 |
HLA-B44:05 | 3DX8 | 6517 | PAVATTQDAGQFYA | -6.68002 | -6.79182 |
HLA-B44:05 | 3DX8 | 6517 | PAVATTQDAGQFYA | -3.22493 | -4.26803 |
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Vaccine Design for the FusionNeoAntigens of MLLT10-DNAJC1 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 10 | 19 | TTQDAGQFY | ACAACTCAGGATGCTGGGCAGTTTTAT |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 11 | 22 | TQDAGQFYAKY | ACTCAGGATGCTGGGCAGTTTTATGCTAAATAT |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 5 | 15 | APAVATTQDA | GCCCCTGCTGTTGCTACAACTCAGGATGCT |
MLLT10-DNAJC1 | chr10 | 22002879 | chr10 | 22193541 | 9 | 18 | ATTQDAGQF | GCTACAACTCAGGATGCTGGGCAGTTT |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
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Information of the samples that have these potential fusion neoantigens of MLLT10-DNAJC1 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
READ | MLLT10-DNAJC1 | chr10 | 22002879 | ENST00000307729 | chr10 | 22193541 | ENST00000376980 | TCGA-AG-A020 |
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Potential target of CAR-T therapy development for MLLT10-DNAJC1 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to MLLT10-DNAJC1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to MLLT10-DNAJC1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MLLT10 | C0007134 | Renal Cell Carcinoma | 1 | CTD_human |
Hgene | MLLT10 | C0025202 | melanoma | 1 | CTD_human |
Hgene | MLLT10 | C0025286 | Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0205834 | Meningiomas, Multiple | 1 | CTD_human |
Hgene | MLLT10 | C0259785 | Malignant Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0279702 | Conventional (Clear Cell) Renal Cell Carcinoma | 1 | CTD_human |
Hgene | MLLT10 | C0281784 | Benign Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0334605 | Meningothelial meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0334606 | Fibrous Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0334607 | Psammomatous Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0334608 | Angiomatous Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0334609 | Hemangioblastic Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0334610 | Hemangiopericytic Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0334611 | Transitional Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0347515 | Spinal Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0349604 | Intracranial Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0431121 | Clear Cell Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0457190 | Xanthomatous Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0751303 | Cerebral Convexity Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C0751304 | Parasagittal Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1266042 | Chromophobe Renal Cell Carcinoma | 1 | CTD_human |
Hgene | MLLT10 | C1266043 | Sarcomatoid Renal Cell Carcinoma | 1 | CTD_human |
Hgene | MLLT10 | C1266044 | Collecting Duct Carcinoma of the Kidney | 1 | CTD_human |
Hgene | MLLT10 | C1306837 | Papillary Renal Cell Carcinoma | 1 | CTD_human |
Hgene | MLLT10 | C1334261 | Intraorbital Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1334271 | Intraventricular Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1335107 | Olfactory Groove Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1384406 | Secretory meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1384408 | Microcystic meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1527197 | Angioblastic Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1565950 | Posterior Fossa Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1565951 | Sphenoid Wing Meningioma | 1 | CTD_human |
Hgene | MLLT10 | C1961099 | Precursor T-Cell Lymphoblastic Leukemia-Lymphoma | 1 | ORPHANET |
Hgene | MLLT10 | C3163622 | Papillary Meningioma | 1 | CTD_human |