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Fusion Protein:SSR1-HADH |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: SSR1-HADH | FusionPDB ID: 86825 | FusionGDB2.0 ID: 86825 | Hgene | Tgene | Gene symbol | SSR1 | HADH | Gene ID | 6745 | 3033 |
Gene name | signal sequence receptor subunit 1 | hydroxyacyl-CoA dehydrogenase | |
Synonyms | TRAPA | HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD | |
Cytomap | 6p24.3 | 4q25 | |
Type of gene | protein-coding | protein-coding | |
Description | translocon-associated protein subunit alphaSSR alpha subunitSSR-alphaTRAP alphasignal sequence receptor subunit alphasignal sequence receptor, alphatranslocon-associated protein alpha subunit | hydroxyacyl-coenzyme A dehydrogenase, mitochondrialL-3-hydroxyacyl-Coenzyme A dehydrogenase, short chainmedium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenaseshort-chain 3-hydroxyacyl-CoA dehydrogenasetestis secretory sperm-binding protein Li | |
Modification date | 20200313 | 20200320 | |
UniProtAcc | . | P55084 Main function of 5'-partner protein: FUNCTION: Mitochondrial trifunctional enzyme catalyzes the last three of the four reactions of the mitochondrial beta-oxidation pathway (PubMed:8135828, PubMed:29915090, PubMed:30850536). The mitochondrial beta-oxidation pathway is the major energy-producing process in tissues and is performed through four consecutive reactions breaking down fatty acids into acetyl-CoA (PubMed:29915090). Among the enzymes involved in this pathway, the trifunctional enzyme exhibits specificity for long-chain fatty acids (PubMed:30850536). Mitochondrial trifunctional enzyme is a heterotetrameric complex composed of two proteins, the trifunctional enzyme subunit alpha/HADHA carries the 2,3-enoyl-CoA hydratase and the 3-hydroxyacyl-CoA dehydrogenase activities, while the trifunctional enzyme subunit beta/HADHB described here bears the 3-ketoacyl-CoA thiolase activity (PubMed:8135828, PubMed:29915090, PubMed:30850536). {ECO:0000269|PubMed:29915090, ECO:0000269|PubMed:30850536, ECO:0000269|PubMed:8135828, ECO:0000303|PubMed:29915090, ECO:0000303|PubMed:30850536}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000244763, ENST00000397511, ENST00000462112, ENST00000474597, ENST00000479365, ENST00000489567, ENST00000534851, ENST00000488834, | ENST00000510728, ENST00000309522, ENST00000403312, ENST00000454409, ENST00000505878, ENST00000603302, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 15 X 18 X 8=2160 | 5 X 7 X 3=105 |
# samples | 18 | 5 | |
** MAII score | log2(18/2160*10)=-3.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/105*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: SSR1 [Title/Abstract] AND HADH [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: SSR1 [Title/Abstract] AND HADH [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | SSR1(7310149)-HADH(108944629), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:7310149/chr4:108944629) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000474597 | SSR1 | chr6 | 7310149 | - | ENST00000603302 | HADH | chr4 | 108944629 | + | 1546 | 279 | 87 | 728 | 213 |
ENST00000474597 | SSR1 | chr6 | 7310149 | - | ENST00000403312 | HADH | chr4 | 108944629 | + | 1547 | 279 | 87 | 728 | 213 |
ENST00000474597 | SSR1 | chr6 | 7310149 | - | ENST00000309522 | HADH | chr4 | 108944629 | + | 1496 | 279 | 87 | 677 | 196 |
ENST00000474597 | SSR1 | chr6 | 7310149 | - | ENST00000505878 | HADH | chr4 | 108944629 | + | 1492 | 279 | 87 | 677 | 196 |
ENST00000474597 | SSR1 | chr6 | 7310149 | - | ENST00000454409 | HADH | chr4 | 108944629 | + | 1492 | 279 | 87 | 677 | 196 |
ENST00000244763 | SSR1 | chr6 | 7310149 | - | ENST00000603302 | HADH | chr4 | 108944629 | + | 1546 | 279 | 87 | 728 | 213 |
ENST00000244763 | SSR1 | chr6 | 7310149 | - | ENST00000403312 | HADH | chr4 | 108944629 | + | 1547 | 279 | 87 | 728 | 213 |
ENST00000244763 | SSR1 | chr6 | 7310149 | - | ENST00000309522 | HADH | chr4 | 108944629 | + | 1496 | 279 | 87 | 677 | 196 |
ENST00000244763 | SSR1 | chr6 | 7310149 | - | ENST00000505878 | HADH | chr4 | 108944629 | + | 1492 | 279 | 87 | 677 | 196 |
ENST00000244763 | SSR1 | chr6 | 7310149 | - | ENST00000454409 | HADH | chr4 | 108944629 | + | 1492 | 279 | 87 | 677 | 196 |
ENST00000397511 | SSR1 | chr6 | 7310149 | - | ENST00000603302 | HADH | chr4 | 108944629 | + | 1537 | 270 | 78 | 719 | 213 |
ENST00000397511 | SSR1 | chr6 | 7310149 | - | ENST00000403312 | HADH | chr4 | 108944629 | + | 1538 | 270 | 78 | 719 | 213 |
ENST00000397511 | SSR1 | chr6 | 7310149 | - | ENST00000309522 | HADH | chr4 | 108944629 | + | 1487 | 270 | 78 | 668 | 196 |
ENST00000397511 | SSR1 | chr6 | 7310149 | - | ENST00000505878 | HADH | chr4 | 108944629 | + | 1483 | 270 | 78 | 668 | 196 |
ENST00000397511 | SSR1 | chr6 | 7310149 | - | ENST00000454409 | HADH | chr4 | 108944629 | + | 1483 | 270 | 78 | 668 | 196 |
ENST00000534851 | SSR1 | chr6 | 7310149 | - | ENST00000603302 | HADH | chr4 | 108944629 | + | 1541 | 274 | 82 | 723 | 213 |
ENST00000534851 | SSR1 | chr6 | 7310149 | - | ENST00000403312 | HADH | chr4 | 108944629 | + | 1542 | 274 | 82 | 723 | 213 |
ENST00000534851 | SSR1 | chr6 | 7310149 | - | ENST00000309522 | HADH | chr4 | 108944629 | + | 1491 | 274 | 82 | 672 | 196 |
ENST00000534851 | SSR1 | chr6 | 7310149 | - | ENST00000505878 | HADH | chr4 | 108944629 | + | 1487 | 274 | 82 | 672 | 196 |
ENST00000534851 | SSR1 | chr6 | 7310149 | - | ENST00000454409 | HADH | chr4 | 108944629 | + | 1487 | 274 | 82 | 672 | 196 |
ENST00000489567 | SSR1 | chr6 | 7310149 | - | ENST00000603302 | HADH | chr4 | 108944629 | + | 1513 | 246 | 54 | 695 | 213 |
ENST00000489567 | SSR1 | chr6 | 7310149 | - | ENST00000403312 | HADH | chr4 | 108944629 | + | 1514 | 246 | 54 | 695 | 213 |
ENST00000489567 | SSR1 | chr6 | 7310149 | - | ENST00000309522 | HADH | chr4 | 108944629 | + | 1463 | 246 | 54 | 644 | 196 |
ENST00000489567 | SSR1 | chr6 | 7310149 | - | ENST00000505878 | HADH | chr4 | 108944629 | + | 1459 | 246 | 54 | 644 | 196 |
ENST00000489567 | SSR1 | chr6 | 7310149 | - | ENST00000454409 | HADH | chr4 | 108944629 | + | 1459 | 246 | 54 | 644 | 196 |
ENST00000479365 | SSR1 | chr6 | 7310149 | - | ENST00000603302 | HADH | chr4 | 108944629 | + | 1521 | 254 | 62 | 703 | 213 |
ENST00000479365 | SSR1 | chr6 | 7310149 | - | ENST00000403312 | HADH | chr4 | 108944629 | + | 1522 | 254 | 62 | 703 | 213 |
ENST00000479365 | SSR1 | chr6 | 7310149 | - | ENST00000309522 | HADH | chr4 | 108944629 | + | 1471 | 254 | 62 | 652 | 196 |
ENST00000479365 | SSR1 | chr6 | 7310149 | - | ENST00000505878 | HADH | chr4 | 108944629 | + | 1467 | 254 | 62 | 652 | 196 |
ENST00000479365 | SSR1 | chr6 | 7310149 | - | ENST00000454409 | HADH | chr4 | 108944629 | + | 1467 | 254 | 62 | 652 | 196 |
ENST00000462112 | SSR1 | chr6 | 7310149 | - | ENST00000603302 | HADH | chr4 | 108944629 | + | 1527 | 260 | 68 | 709 | 213 |
ENST00000462112 | SSR1 | chr6 | 7310149 | - | ENST00000403312 | HADH | chr4 | 108944629 | + | 1528 | 260 | 68 | 709 | 213 |
ENST00000462112 | SSR1 | chr6 | 7310149 | - | ENST00000309522 | HADH | chr4 | 108944629 | + | 1477 | 260 | 68 | 658 | 196 |
ENST00000462112 | SSR1 | chr6 | 7310149 | - | ENST00000505878 | HADH | chr4 | 108944629 | + | 1473 | 260 | 68 | 658 | 196 |
ENST00000462112 | SSR1 | chr6 | 7310149 | - | ENST00000454409 | HADH | chr4 | 108944629 | + | 1473 | 260 | 68 | 658 | 196 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000474597 | ENST00000603302 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.00027621 | 0.99972373 |
ENST00000474597 | ENST00000403312 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000280418 | 0.99971956 |
ENST00000474597 | ENST00000309522 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000234301 | 0.9997657 |
ENST00000474597 | ENST00000505878 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000225545 | 0.9997745 |
ENST00000474597 | ENST00000454409 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000225545 | 0.9997745 |
ENST00000244763 | ENST00000603302 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.00027621 | 0.99972373 |
ENST00000244763 | ENST00000403312 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000280418 | 0.99971956 |
ENST00000244763 | ENST00000309522 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000234301 | 0.9997657 |
ENST00000244763 | ENST00000505878 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000225545 | 0.9997745 |
ENST00000244763 | ENST00000454409 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000225545 | 0.9997745 |
ENST00000397511 | ENST00000603302 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000247606 | 0.99975234 |
ENST00000397511 | ENST00000403312 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000252186 | 0.9997478 |
ENST00000397511 | ENST00000309522 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000192616 | 0.9998074 |
ENST00000397511 | ENST00000505878 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000185814 | 0.9998142 |
ENST00000397511 | ENST00000454409 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000185814 | 0.9998142 |
ENST00000534851 | ENST00000603302 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000229562 | 0.99977046 |
ENST00000534851 | ENST00000403312 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.00023243 | 0.9997676 |
ENST00000534851 | ENST00000309522 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000185988 | 0.9998141 |
ENST00000534851 | ENST00000505878 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000181493 | 0.9998185 |
ENST00000534851 | ENST00000454409 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000181493 | 0.9998185 |
ENST00000489567 | ENST00000603302 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000275528 | 0.99972445 |
ENST00000489567 | ENST00000403312 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000278265 | 0.9997217 |
ENST00000489567 | ENST00000309522 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000251814 | 0.9997482 |
ENST00000489567 | ENST00000505878 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000247083 | 0.99975294 |
ENST00000489567 | ENST00000454409 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000247083 | 0.99975294 |
ENST00000479365 | ENST00000603302 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000236753 | 0.9997632 |
ENST00000479365 | ENST00000403312 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000239514 | 0.99976045 |
ENST00000479365 | ENST00000309522 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000196611 | 0.99980336 |
ENST00000479365 | ENST00000505878 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000189351 | 0.99981064 |
ENST00000479365 | ENST00000454409 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000189351 | 0.99981064 |
ENST00000462112 | ENST00000603302 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000255597 | 0.99974436 |
ENST00000462112 | ENST00000403312 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000257511 | 0.99974245 |
ENST00000462112 | ENST00000309522 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.0002153 | 0.99978477 |
ENST00000462112 | ENST00000505878 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000203432 | 0.99979657 |
ENST00000462112 | ENST00000454409 | SSR1 | chr6 | 7310149 | - | HADH | chr4 | 108944629 | + | 0.000203432 | 0.99979657 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for SSR1-HADH |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
SSR1 | chr6 | 7310149 | HADH | chr4 | 108944629 | 246 | 64 | DEAEVEEDEPTDLVIKTPMTSQKTFE |
SSR1 | chr6 | 7310149 | HADH | chr4 | 108944629 | 254 | 64 | DEAEVEEDEPTDLVIKTPMTSQKTFE |
SSR1 | chr6 | 7310149 | HADH | chr4 | 108944629 | 260 | 64 | DEAEVEEDEPTDLVIKTPMTSQKTFE |
SSR1 | chr6 | 7310149 | HADH | chr4 | 108944629 | 270 | 64 | DEAEVEEDEPTDLVIKTPMTSQKTFE |
SSR1 | chr6 | 7310149 | HADH | chr4 | 108944629 | 274 | 64 | DEAEVEEDEPTDLVIKTPMTSQKTFE |
SSR1 | chr6 | 7310149 | HADH | chr4 | 108944629 | 279 | 64 | DEAEVEEDEPTDLVIKTPMTSQKTFE |
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Potential FusionNeoAntigen Information of SSR1-HADH in HLA I |
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SSR1-HADH_7310149_108944629.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | HLA-B45:01 | EEDEPTDLV | 0.9384 | 0.8295 | 5 | 14 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | HLA-B50:02 | EEDEPTDLV | 0.8586 | 0.5527 | 5 | 14 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | HLA-B41:01 | EEDEPTDLV | 0.1394 | 0.8859 | 5 | 14 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | HLA-B44:10 | EEDEPTDLV | 0.6855 | 0.5325 | 5 | 14 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | HLA-B39:08 | EEDEPTDLV | 0.1832 | 0.8305 | 5 | 14 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | HLA-B39:11 | EEDEPTDLV | 0.1469 | 0.7702 | 5 | 14 |
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Potential FusionNeoAntigen Information of SSR1-HADH in HLA II |
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SSR1-HADH_7310149_108944629.msa |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-0804 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-0804 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-0820 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-0820 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-0828 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-0828 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1125 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1167 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1167 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1318 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1367 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1403 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1403 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1412 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1412 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1415 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1415 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1427 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1427 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1440 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1440 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1467 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1467 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1477 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1477 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1484 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1484 | EPTDLVIKTPMTSQK | 8 | 23 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1489 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1498 | PTDLVIKTPMTSQKT | 9 | 24 |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 279 | DRB1-1498 | EPTDLVIKTPMTSQK | 8 | 23 |
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Fusion breakpoint peptide structures of SSR1-HADH |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
1582 | EDEPTDLVIKTPMT | SSR1 | HADH | chr6 | 7310149 | chr4 | 108944629 | 279 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of SSR1-HADH |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B52:01 | 3W39 | 1582 | EDEPTDLVIKTPMT | -6.4768 | -6.4768 |
HLA-B44:05 | 3DX8 | 1582 | EDEPTDLVIKTPMT | -4.90229 | -4.90229 |
HLA-A02:01 | 6TDR | 1582 | EDEPTDLVIKTPMT | -7.52444 | -7.52444 |
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Vaccine Design for the FusionNeoAntigens of SSR1-HADH |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 5 | 14 | EEDEPTDLV | GAAGAAGATGAACCCACAGATTTGGTC |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 8 | 23 | EPTDLVIKTPMTSQK | GAACCCACAGATTTGGTCATTAAAACACCAATGACCAGCCAGAAG |
SSR1-HADH | chr6 | 7310149 | chr4 | 108944629 | 9 | 24 | PTDLVIKTPMTSQKT | CCCACAGATTTGGTCATTAAAACACCAATGACCAGCCAGAAGACA |
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Information of the samples that have these potential fusion neoantigens of SSR1-HADH |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
Non-Cancer | SSR1-HADH | chr6 | 7310149 | ENST00000244763 | chr4 | 108944629 | ENST00000309522 | 123Nd |
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Potential target of CAR-T therapy development for SSR1-HADH |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to SSR1-HADH |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to SSR1-HADH |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |