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Center for Computational Systems Medicine level2
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein Structure

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pLDDT scores

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Ramachandran Plot of Fusion Protein Structure

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:GOLGA4-HSPA8

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: GOLGA4-HSPA8
FusionPDB ID: 33899
FusionGDB2.0 ID: 33899
HgeneTgene
Gene symbol

GOLGA4

HSPA8

Gene ID

2803

3312

Gene namegolgin A4heat shock protein family A (Hsp70) member 8
SynonymsCRPF46|GCP2|GOLG|MU-RMS-40.18|p230HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71
Cytomap

3p22.2

11q24.1

Type of geneprotein-codingprotein-coding
Descriptiongolgin subfamily A member 4256 kDa golgin72.1 proteincentrosome-related protein F46golgi autoantigen, golgin subfamily a, 4golgin-240golgin-245protein 72.1trans-Golgi p230heat shock cognate 71 kDa proteinLPS-associated protein 1N-myristoyltransferase inhibitor protein 71constitutive heat shock protein 70epididymis luminal protein 33epididymis secretory sperm binding protein Li 72pheat shock 70kDa protein 8heat shock
Modification date2020031320200327
UniProtAcc

Q13439

P11142

Ensembl transtripts involved in fusion geneENST idsENST00000356847, ENST00000361924, 
ENST00000444882, ENST00000435830, 
ENST00000534319, ENST00000227378, 
ENST00000453788, ENST00000526110, 
ENST00000526862, ENST00000533540, 
ENST00000534624, ENST00000532636, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score24 X 16 X 11=422420 X 20 X 4=1600
# samples 2723
** MAII scorelog2(27/4224*10)=-3.96757852230762
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(23/1600*10)=-2.79836613883035
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: GOLGA4 [Title/Abstract] AND HSPA8 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)GOLGA4(37292975)-HSPA8(122930976), # samples:3
Anticipated loss of major functional domain due to fusion event.GOLGA4-HSPA8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
GOLGA4-HSPA8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
GOLGA4-HSPA8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
GOLGA4-HSPA8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneGOLGA4

GO:0043001

Golgi to plasma membrane protein transport

15265687

HgeneGOLGA4

GO:0045773

positive regulation of axon extension

22705394

TgeneHSPA8

GO:0042026

protein refolding

21231916|25719862

TgeneHSPA8

GO:0045892

negative regulation of transcription, DNA-templated

10722728

TgeneHSPA8

GO:0046034

ATP metabolic process

23921388

TgeneHSPA8

GO:1902904

negative regulation of supramolecular fiber organization

23921388


check buttonFusion gene breakpoints across GOLGA4 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across HSPA8 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-GM-A2DF-01AGOLGA4chr3

37292975

-HSPA8chr11

122930976

-
ChimerDB4BRCATCGA-GM-A2DF-01AGOLGA4chr3

37292975

+HSPA8chr11

122930976

-
ChimerDB4BRCATCGA-GM-A2DFGOLGA4chr3

37292975

+HSPA8chr11

122930976

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000361924GOLGA4chr337292975+ENST00000532636HSPA8chr11122930976-23115363742065563
ENST00000444882GOLGA4chr337292975+ENST00000532636HSPA8chr11122930976-22414663041995563
ENST00000356847GOLGA4chr337292975+ENST00000532636HSPA8chr11122930976-22364612991990563

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000361924ENST00000532636GOLGA4chr337292975+HSPA8chr11122930976-0.002679510.9973205
ENST00000444882ENST00000532636GOLGA4chr337292975+HSPA8chr11122930976-0.0030683540.9969317
ENST00000356847ENST00000532636GOLGA4chr337292975+HSPA8chr11122930976-0.0030913950.9969086

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>33899_33899_1_GOLGA4-HSPA8_GOLGA4_chr3_37292975_ENST00000356847_HSPA8_chr11_122930976_ENST00000532636_length(amino acids)=563AA_BP=54
MFKKLKQKISEEQQQLQQALAPAQASSNSSTPTRMRSRTSSFTEQLDEGTPNRETVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRII
NEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRL
RTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDF
FNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVY
EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQR
DKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPG

--------------------------------------------------------------

>33899_33899_2_GOLGA4-HSPA8_GOLGA4_chr3_37292975_ENST00000361924_HSPA8_chr11_122930976_ENST00000532636_length(amino acids)=563AA_BP=54
MFKKLKQKISEEQQQLQQALAPAQASSNSSTPTRMRSRTSSFTEQLDEGTPNRETVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRII
NEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRL
RTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDF
FNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVY
EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQR
DKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPG

--------------------------------------------------------------

>33899_33899_3_GOLGA4-HSPA8_GOLGA4_chr3_37292975_ENST00000444882_HSPA8_chr11_122930976_ENST00000532636_length(amino acids)=563AA_BP=54
MFKKLKQKISEEQQQLQQALAPAQASSNSSTPTRMRSRTSSFTEQLDEGTPNRETVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRII
NEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRL
RTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDF
FNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVY
EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQR
DKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPG

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:37292975/chr11:122930976)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GOLGA4

Q13439

HSPA8

P11142

FUNCTION: Involved in vesicular trafficking at the Golgi apparatus level. May play a role in delivery of transport vesicles containing GPI-linked proteins from the trans-Golgi network through its interaction with MACF1. Involved in endosome-to-Golgi trafficking (PubMed:29084197). {ECO:0000269|PubMed:15265687, ECO:0000269|PubMed:29084197}.FUNCTION: Molecular chaperone implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. Plays a pivotal role in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation (PubMed:21150129, PubMed:21148293, PubMed:24732912, PubMed:27916661, PubMed:23018488). This is achieved through cycles of ATP binding, ATP hydrolysis and ADP release, mediated by co-chaperones (PubMed:21150129, PubMed:21148293, PubMed:24732912, PubMed:27916661, PubMed:23018488, PubMed:12526792). The co-chaperones have been shown to not only regulate different steps of the ATPase cycle of HSP70, but they also have an individual specificity such that one co-chaperone may promote folding of a substrate while another may promote degradation (PubMed:21150129, PubMed:21148293, PubMed:24732912, PubMed:27916661, PubMed:23018488, PubMed:12526792). The affinity of HSP70 for polypeptides is regulated by its nucleotide bound state. In the ATP-bound form, it has a low affinity for substrate proteins. However, upon hydrolysis of the ATP to ADP, it undergoes a conformational change that increases its affinity for substrate proteins. HSP70 goes through repeated cycles of ATP hydrolysis and nucleotide exchange, which permits cycles of substrate binding and release. The HSP70-associated co-chaperones are of three types: J-domain co-chaperones HSP40s (stimulate ATPase hydrolysis by HSP70), the nucleotide exchange factors (NEF) such as BAG1/2/3 (facilitate conversion of HSP70 from the ADP-bound to the ATP-bound state thereby promoting substrate release), and the TPR domain chaperones such as HOPX and STUB1 (PubMed:24318877, PubMed:27474739, PubMed:24121476, PubMed:26865365). Plays a critical role in mitochondrial import, delivers preproteins to the mitochondrial import receptor TOMM70 (PubMed:12526792). Acts as a repressor of transcriptional activation. Inhibits the transcriptional coactivator activity of CITED1 on Smad-mediated transcription. Component of the PRP19-CDC5L complex that forms an integral part of the spliceosome and is required for activating pre-mRNA splicing. May have a scaffolding role in the spliceosome assembly as it contacts all other components of the core complex. Binds bacterial lipopolysaccharide (LPS) and mediates LPS-induced inflammatory response, including TNF secretion by monocytes (PubMed:10722728, PubMed:11276205). Participates in the ER-associated degradation (ERAD) quality control pathway in conjunction with J domain-containing co-chaperones and the E3 ligase STUB1 (PubMed:23990462). Interacts with VGF-derived peptide TLQP-21 (PubMed:28934328). {ECO:0000269|PubMed:10722728, ECO:0000269|PubMed:11276205, ECO:0000269|PubMed:12526792, ECO:0000269|PubMed:21148293, ECO:0000269|PubMed:21150129, ECO:0000269|PubMed:23018488, ECO:0000269|PubMed:23990462, ECO:0000269|PubMed:24318877, ECO:0000269|PubMed:24732912, ECO:0000269|PubMed:27474739, ECO:0000269|PubMed:27916661, ECO:0000269|PubMed:28934328, ECO:0000303|PubMed:24121476, ECO:0000303|PubMed:26865365}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneHSPA8chr3:37292975chr11:122930976ENST0000022737818202_204137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000022737818268_275137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000045378828202_204137.0494.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000045378828268_275137.0494.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000053263629202_204137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000053263629268_275137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000053462429202_204137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000053462429268_275137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST0000022737818394_509137.0647.0RegionSubstrate-binding domain (SBD)
TgeneHSPA8chr3:37292975chr11:122930976ENST0000045378828394_509137.0494.0RegionSubstrate-binding domain (SBD)
TgeneHSPA8chr3:37292975chr11:122930976ENST0000053263629394_509137.0647.0RegionSubstrate-binding domain (SBD)
TgeneHSPA8chr3:37292975chr11:122930976ENST0000053462429394_509137.0647.0RegionSubstrate-binding domain (SBD)

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000356847+223133_218554.02244.0Coiled coilOntology_term=ECO:0000255
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000361924+224133_218554.02306.3333333333335Coiled coilOntology_term=ECO:0000255
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000356847+223252_209654.02244.0Compositional biasNote=Glu-rich
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000361924+224252_209654.02306.3333333333335Compositional biasNote=Glu-rich
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000356847+2232168_221554.02244.0DomainGRIP
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000361924+2242168_221554.02306.3333333333335DomainGRIP
TgeneHSPA8chr3:37292975chr11:122930976ENST000002273781812_15137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST000004537882812_15137.0494.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST000005326362912_15137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST000005346242912_15137.0647.0Nucleotide bindingNote=ATP
TgeneHSPA8chr3:37292975chr11:122930976ENST00000227378182_386137.0647.0RegionNucleotide-binding domain (NBD)
TgeneHSPA8chr3:37292975chr11:122930976ENST00000453788282_386137.0494.0RegionNucleotide-binding domain (NBD)
TgeneHSPA8chr3:37292975chr11:122930976ENST00000532636292_386137.0647.0RegionNucleotide-binding domain (NBD)
TgeneHSPA8chr3:37292975chr11:122930976ENST00000534624292_386137.0647.0RegionNucleotide-binding domain (NBD)


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Fusion Protein Structures

check button PDB and CIF files of the predicted fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Fusion protein PDB link (fusion AA seq ID in FusionPDB)HgeneHchrHbpHstrandTgeneTchrTbpTstrandAA seqLen(AA seq)
PDB file >>>1207_GOLGA4_37292975_HSPA8_122930976_1207_GOLGA4_37292975_HSPA8_122930976_ranked_0.pdbGOLGA43729297537292975ENST00000532636HSPA8chr11122930976-
MFKKLKQKISEEQQQLQQALAPAQASSNSSTPTRMRSRTSSFTEQLDEGTPNRETVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRII
NEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRL
RTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDF
FNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVY
EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQR
DKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPG
563


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pLDDT score distribution

check button pLDDT score distribution of the predicted wild-type structures of two partner proteins from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
GOLGA4_pLDDT.png
all structure
all structure
HSPA8_pLDDT.png
all structure
all structure

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
all structure


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Ramachandran Plot of Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.
Fusion AA seq ID in FusionPDB and their Ramachandran plots

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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
GOLGA4
HSPA8


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000356847+223133_20354.02244.0MACF1
HgeneGOLGA4chr3:37292975chr11:122930976ENST00000361924+224133_20354.02306.3333333333335MACF1


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Related Drugs to GOLGA4-HSPA8


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to GOLGA4-HSPA8


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource