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Center for Computational Systems Medicine level2
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein Structure

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pLDDT scores

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Ramachandran Plot of Fusion Protein Structure

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:JUP-TTLL6

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: JUP-TTLL6
FusionPDB ID: 41081
FusionGDB2.0 ID: 41081
HgeneTgene
Gene symbol

JUP

TTLL6

Gene ID

3728

284076

Gene namejunction plakoglobintubulin tyrosine ligase like 6
SynonymsCTNNG|DP3|DPIII|PDGB|PKGBTTL.6
Cytomap

17q21.2

17q21.32

Type of geneprotein-codingprotein-coding
Descriptionjunction plakoglobincatenin (cadherin-associated protein), gamma 80kDadesmoplakin IIIdesmoplakin-3tubulin polyglutamylase TTLL6tubulin tyrosine ligase-like family member 6tubulin--tyrosine ligase-like protein 6
Modification date2020031320200320
UniProtAcc

P14923

.
Ensembl transtripts involved in fusion geneENST idsENST00000310706, ENST00000393930, 
ENST00000393931, ENST00000540235, 
ENST00000470462, ENST00000393382, 
ENST00000433608, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score22 X 25 X 12=66002 X 2 X 2=8
# samples 323
** MAII scorelog2(32/6600*10)=-4.36632221424582
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(3/8*10)=1.90689059560852
Context (manual curation of fusion genes in FusionPDB)

PubMed: JUP [Title/Abstract] AND TTLL6 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)JUP(39925221)-TTLL6(46865361), # samples:2
JUP(39925220)-TTLL6(46865361), # samples:2
Anticipated loss of major functional domain due to fusion event.JUP-TTLL6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
JUP-TTLL6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
JUP-TTLL6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
JUP-TTLL6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
JUP-TTLL6 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF.
JUP-TTLL6 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneJUP

GO:0002159

desmosome assembly

22889254

HgeneJUP

GO:0042127

regulation of cell proliferation

17924338

HgeneJUP

GO:0042307

positive regulation of protein import into nucleus

10825188|14661054

HgeneJUP

GO:0050982

detection of mechanical stimulus

18937352

HgeneJUP

GO:0051091

positive regulation of DNA-binding transcription factor activity

14661054

HgeneJUP

GO:0071681

cellular response to indole-3-methanol

10868478

HgeneJUP

GO:0098609

cell-cell adhesion

18937352


check buttonFusion gene breakpoints across JUP (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across TTLL6 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4ESCATCGA-L5-A4OW-01AJUPchr17

39925221

-TTLL6chr17

46865361

-
ChimerDB4ESCATCGA-L5-A4OWJUPchr17

39925220

-TTLL6chr17

46865361

-
ChimerDB4ESCATCGA-L5-A4OWJUPchr17

39925221

-TTLL6chr17

46865361

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000540235JUPchr1739925221-ENST00000433608TTLL6chr1746865361-272270701982660
ENST00000540235JUPchr1739925221-ENST00000393382TTLL6chr1746865361-271670701982660
ENST00000393930JUPchr1739925221-ENST00000433608TTLL6chr1746865361-29399242172199660
ENST00000393930JUPchr1739925221-ENST00000393382TTLL6chr1746865361-29339242172199660
ENST00000310706JUPchr1739925221-ENST00000433608TTLL6chr1746865361-28418261192101660
ENST00000310706JUPchr1739925221-ENST00000393382TTLL6chr1746865361-28358261192101660
ENST00000540235JUPchr1739925220-ENST00000433608TTLL6chr1746865361-272270701982660
ENST00000540235JUPchr1739925220-ENST00000393382TTLL6chr1746865361-271670701982660
ENST00000393930JUPchr1739925220-ENST00000433608TTLL6chr1746865361-29399242172199660
ENST00000393930JUPchr1739925220-ENST00000393382TTLL6chr1746865361-29339242172199660
ENST00000310706JUPchr1739925220-ENST00000433608TTLL6chr1746865361-28418261192101660
ENST00000310706JUPchr1739925220-ENST00000393382TTLL6chr1746865361-28358261192101660

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000540235ENST00000433608JUPchr1739925221-TTLL6chr1746865361-0.0119216930.9880783
ENST00000540235ENST00000393382JUPchr1739925221-TTLL6chr1746865361-0.012231120.9877688
ENST00000393930ENST00000433608JUPchr1739925221-TTLL6chr1746865361-0.0119056850.9880944
ENST00000393930ENST00000393382JUPchr1739925221-TTLL6chr1746865361-0.0122432880.9877567
ENST00000310706ENST00000433608JUPchr1739925221-TTLL6chr1746865361-0.0128326610.9871673
ENST00000310706ENST00000393382JUPchr1739925221-TTLL6chr1746865361-0.0131855060.9868145
ENST00000540235ENST00000433608JUPchr1739925220-TTLL6chr1746865361-0.0119216930.9880783
ENST00000540235ENST00000393382JUPchr1739925220-TTLL6chr1746865361-0.012231120.9877688
ENST00000393930ENST00000433608JUPchr1739925220-TTLL6chr1746865361-0.0119056850.9880944
ENST00000393930ENST00000393382JUPchr1739925220-TTLL6chr1746865361-0.0122432880.9877567
ENST00000310706ENST00000433608JUPchr1739925220-TTLL6chr1746865361-0.0128326610.9871673
ENST00000310706ENST00000393382JUPchr1739925220-TTLL6chr1746865361-0.0131855060.9868145

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>41081_41081_1_JUP-TTLL6_JUP_chr17_39925220_ENST00000310706_TTLL6_chr17_46865361_ENST00000393382_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_2_JUP-TTLL6_JUP_chr17_39925220_ENST00000310706_TTLL6_chr17_46865361_ENST00000433608_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_3_JUP-TTLL6_JUP_chr17_39925220_ENST00000393930_TTLL6_chr17_46865361_ENST00000393382_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_4_JUP-TTLL6_JUP_chr17_39925220_ENST00000393930_TTLL6_chr17_46865361_ENST00000433608_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_5_JUP-TTLL6_JUP_chr17_39925220_ENST00000540235_TTLL6_chr17_46865361_ENST00000393382_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_6_JUP-TTLL6_JUP_chr17_39925220_ENST00000540235_TTLL6_chr17_46865361_ENST00000433608_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_7_JUP-TTLL6_JUP_chr17_39925221_ENST00000310706_TTLL6_chr17_46865361_ENST00000393382_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_8_JUP-TTLL6_JUP_chr17_39925221_ENST00000310706_TTLL6_chr17_46865361_ENST00000433608_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_9_JUP-TTLL6_JUP_chr17_39925221_ENST00000393930_TTLL6_chr17_46865361_ENST00000393382_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_10_JUP-TTLL6_JUP_chr17_39925221_ENST00000393930_TTLL6_chr17_46865361_ENST00000433608_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_11_JUP-TTLL6_JUP_chr17_39925221_ENST00000540235_TTLL6_chr17_46865361_ENST00000393382_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

--------------------------------------------------------------

>41081_41081_12_JUP-TTLL6_JUP_chr17_39925221_ENST00000540235_TTLL6_chr17_46865361_ENST00000433608_length(amino acids)=660AA_BP=235
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC
PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLN
SEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQP
LTLVSYTPDLLLSVRGERKNETDSSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVH
LTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPH
LISELLTKLQLSGKLSFFPAHYNPKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQLDPRPCRS

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:39925221/chr17:46865361)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
JUP

P14923

.
FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton (By similarity). {ECO:0000250}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415132_171235.66666666666666968.6666666666666RepeatNote=ARM 1
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415172_215235.66666666666666968.6666666666666RepeatNote=ARM 2
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415132_171235.66666666666666936.0RepeatNote=ARM 1
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415172_215235.66666666666666936.0RepeatNote=ARM 2
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414132_171235.66666666666666746.0RepeatNote=ARM 1
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414172_215235.66666666666666746.0RepeatNote=ARM 2
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415132_171235.66666666666666968.6666666666666RepeatNote=ARM 1
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415172_215235.66666666666666968.6666666666666RepeatNote=ARM 2
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415132_171235.66666666666666936.0RepeatNote=ARM 1
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415172_215235.66666666666666936.0RepeatNote=ARM 2
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414132_171235.66666666666666746.0RepeatNote=ARM 1
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414172_215235.66666666666666746.0RepeatNote=ARM 2
TgeneTTLL6chr17:39925220chr17:46865361ENST0000043360829203_206159.66666666666666801.0Nucleotide bindingATP binding
TgeneTTLL6chr17:39925221chr17:46865361ENST0000043360829203_206159.66666666666666801.0Nucleotide bindingATP binding
TgeneTTLL6chr17:39925220chr17:46865361ENST0000043360829372_451159.66666666666666801.0Regionc-MTBD region
TgeneTTLL6chr17:39925221chr17:46865361ENST0000043360829372_451159.66666666666666801.0Regionc-MTBD region

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415216_255235.66666666666666968.6666666666666RepeatNote=ARM 3
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415258_297235.66666666666666968.6666666666666RepeatNote=ARM 4
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415298_341235.66666666666666968.6666666666666RepeatNote=ARM 5
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415342_381235.66666666666666968.6666666666666RepeatNote=ARM 6
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415383_420235.66666666666666968.6666666666666RepeatNote=ARM 7
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415423_464235.66666666666666968.6666666666666RepeatNote=ARM 8
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415470_510235.66666666666666968.6666666666666RepeatNote=ARM 9
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415512_551235.66666666666666968.6666666666666RepeatNote=ARM 10
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415574_613235.66666666666666968.6666666666666RepeatNote=ARM 11
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415615_661235.66666666666666968.6666666666666RepeatNote=ARM 12
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415216_255235.66666666666666936.0RepeatNote=ARM 3
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415258_297235.66666666666666936.0RepeatNote=ARM 4
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415298_341235.66666666666666936.0RepeatNote=ARM 5
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415342_381235.66666666666666936.0RepeatNote=ARM 6
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415383_420235.66666666666666936.0RepeatNote=ARM 7
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415423_464235.66666666666666936.0RepeatNote=ARM 8
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415470_510235.66666666666666936.0RepeatNote=ARM 9
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415512_551235.66666666666666936.0RepeatNote=ARM 10
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415574_613235.66666666666666936.0RepeatNote=ARM 11
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415615_661235.66666666666666936.0RepeatNote=ARM 12
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414216_255235.66666666666666746.0RepeatNote=ARM 3
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414258_297235.66666666666666746.0RepeatNote=ARM 4
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414298_341235.66666666666666746.0RepeatNote=ARM 5
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414342_381235.66666666666666746.0RepeatNote=ARM 6
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414383_420235.66666666666666746.0RepeatNote=ARM 7
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414423_464235.66666666666666746.0RepeatNote=ARM 8
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414470_510235.66666666666666746.0RepeatNote=ARM 9
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414512_551235.66666666666666746.0RepeatNote=ARM 10
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414574_613235.66666666666666746.0RepeatNote=ARM 11
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414615_661235.66666666666666746.0RepeatNote=ARM 12
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415216_255235.66666666666666968.6666666666666RepeatNote=ARM 3
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415258_297235.66666666666666968.6666666666666RepeatNote=ARM 4
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415298_341235.66666666666666968.6666666666666RepeatNote=ARM 5
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415342_381235.66666666666666968.6666666666666RepeatNote=ARM 6
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415383_420235.66666666666666968.6666666666666RepeatNote=ARM 7
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415423_464235.66666666666666968.6666666666666RepeatNote=ARM 8
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415470_510235.66666666666666968.6666666666666RepeatNote=ARM 9
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415512_551235.66666666666666968.6666666666666RepeatNote=ARM 10
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415574_613235.66666666666666968.6666666666666RepeatNote=ARM 11
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415615_661235.66666666666666968.6666666666666RepeatNote=ARM 12
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415216_255235.66666666666666936.0RepeatNote=ARM 3
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415258_297235.66666666666666936.0RepeatNote=ARM 4
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415298_341235.66666666666666936.0RepeatNote=ARM 5
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415342_381235.66666666666666936.0RepeatNote=ARM 6
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415383_420235.66666666666666936.0RepeatNote=ARM 7
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415423_464235.66666666666666936.0RepeatNote=ARM 8
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415470_510235.66666666666666936.0RepeatNote=ARM 9
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415512_551235.66666666666666936.0RepeatNote=ARM 10
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415574_613235.66666666666666936.0RepeatNote=ARM 11
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415615_661235.66666666666666936.0RepeatNote=ARM 12
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414216_255235.66666666666666746.0RepeatNote=ARM 3
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414258_297235.66666666666666746.0RepeatNote=ARM 4
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414298_341235.66666666666666746.0RepeatNote=ARM 5
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414342_381235.66666666666666746.0RepeatNote=ARM 6
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414383_420235.66666666666666746.0RepeatNote=ARM 7
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414423_464235.66666666666666746.0RepeatNote=ARM 8
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414470_510235.66666666666666746.0RepeatNote=ARM 9
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414512_551235.66666666666666746.0RepeatNote=ARM 10
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414574_613235.66666666666666746.0RepeatNote=ARM 11
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414615_661235.66666666666666746.0RepeatNote=ARM 12
TgeneTTLL6chr17:39925220chr17:46865361ENST0000039338291658_401466.66666666666671070.0DomainTTL
TgeneTTLL6chr17:39925220chr17:46865361ENST000004336082958_401159.66666666666666801.0DomainTTL
TgeneTTLL6chr17:39925221chr17:46865361ENST0000039338291658_401466.66666666666671070.0DomainTTL
TgeneTTLL6chr17:39925221chr17:46865361ENST000004336082958_401159.66666666666666801.0DomainTTL
TgeneTTLL6chr17:39925220chr17:46865361ENST00000393382916203_206466.66666666666671070.0Nucleotide bindingATP binding
TgeneTTLL6chr17:39925221chr17:46865361ENST00000393382916203_206466.66666666666671070.0Nucleotide bindingATP binding
TgeneTTLL6chr17:39925220chr17:46865361ENST00000393382916372_451466.66666666666671070.0Regionc-MTBD region
TgeneTTLL6chr17:39925221chr17:46865361ENST00000393382916372_451466.66666666666671070.0Regionc-MTBD region


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Fusion Protein Structures

check button PDB and CIF files of the predicted fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Fusion protein PDB link (fusion AA seq ID in FusionPDB)HgeneHchrHbpHstrandTgeneTchrTbpTstrandAA seqLen(AA seq)


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pLDDT score distribution

check button pLDDT score distribution of the predicted wild-type structures of two partner proteins from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
JUP_pLDDT.png
all structure
all structure
TTLL6_pLDDT.png
all structure
all structure

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.


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Ramachandran Plot of Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.
Fusion AA seq ID in FusionPDB and their Ramachandran plots

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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
JUP
TTLL6


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415574_661235.66666666666666968.6666666666666DSC1
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415574_661235.66666666666666936.0DSC1
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414574_661235.66666666666666746.0DSC1
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415574_661235.66666666666666968.6666666666666DSC1
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415574_661235.66666666666666936.0DSC1
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414574_661235.66666666666666746.0DSC1
HgeneJUPchr17:39925220chr17:46865361ENST00000310706-415132_297235.66666666666666968.6666666666666DSC1 and DSG1
HgeneJUPchr17:39925220chr17:46865361ENST00000393930-415132_297235.66666666666666936.0DSC1 and DSG1
HgeneJUPchr17:39925220chr17:46865361ENST00000393931-414132_297235.66666666666666746.0DSC1 and DSG1
HgeneJUPchr17:39925221chr17:46865361ENST00000310706-415132_297235.66666666666666968.6666666666666DSC1 and DSG1
HgeneJUPchr17:39925221chr17:46865361ENST00000393930-415132_297235.66666666666666936.0DSC1 and DSG1
HgeneJUPchr17:39925221chr17:46865361ENST00000393931-414132_297235.66666666666666746.0DSC1 and DSG1


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Related Drugs to JUP-TTLL6


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to JUP-TTLL6


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource