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Center for Computational Systems Medicine level2
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein Structure

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pLDDT scores

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Ramachandran Plot of Fusion Protein Structure

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:RGPD1-RANBP2

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: RGPD1-RANBP2
FusionPDB ID: 73775
FusionGDB2.0 ID: 73775
HgeneTgene
Gene symbol

RGPD1

RANBP2

Gene ID

400966

5903

Gene nameRANBP2 like and GRIP domain containing 1RAN binding protein 2
SynonymsRGP1|RGPD2|RanBP2L2ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2
Cytomap

2p11.2

2q13

Type of geneprotein-codingprotein-coding
DescriptionRANBP2-like and GRIP domain-containing protein 1RANBP2-like and GRIP domain-containing protein 1/2ran-binding protein 2-like 2/6ran-binding protein 2-like 6ranBP2-like 2/6ranBP2-like 6ranBP2L6E3 SUMO-protein ligase RanBP2358 kDa nucleoporinE3 SUMO-protein transferase RanBP2P270acute necrotizing encephalopathy 1 (autosomal dominant)nuclear pore complex protein Nup358nucleoporin 358nucleoporin Nup358ran-binding protein 2transformation-r
Modification date2020031320200313
UniProtAcc.

RGPD8

Ensembl transtripts involved in fusion geneENST idsENST00000398193, ENST00000409776, 
ENST00000559485, 
ENST00000283195, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score6 X 3 X 2=3614 X 14 X 3=588
# samples 514
** MAII scorelog2(5/36*10)=0.473931188332412
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(14/588*10)=-2.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: RGPD1 [Title/Abstract] AND RANBP2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)RGPD1(87203413)-RANBP2(109369453), # samples:10
Anticipated loss of major functional domain due to fusion event.RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneRANBP2

GO:0016925

protein sumoylation

17264123|22155184


check buttonFusion gene breakpoints across RGPD1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across RANBP2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4Non-CancerSPNT_056RGPD1chr2

87203413

+RANBP2chr2

109369453

+
ChimerDB4Non-CancerSPNT_079RGPD1chr2

87203413

+RANBP2chr2

109369453

+
ChimerDB4Non-CancerSPNT_100RGPD1chr2

87203413

+RANBP2chr2

109369453

+
ChimerDB4Non-CancerSPNT_228RGPD1chr2

87203413

+RANBP2chr2

109369453

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000409776RGPD1chr287203413+ENST00000283195RANBP2chr2109369453+1187420441699633315
ENST00000398193RGPD1chr287203413+ENST00000283195RANBP2chr2109369453+11920209038100093323
ENST00000559485RGPD1chr287203413+ENST00000283195RANBP2chr2109369453+1187420441699633315

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>73775_73775_1_RGPD1-RANBP2_RGPD1_chr2_87203413_ENST00000398193_RANBP2_chr2_109369453_ENST00000283195_length(amino acids)=3323AA_BP=638
MRRSKAYGERYLASVQGSAPSPGKKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNP
PQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRL
KDAVARCHEAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKS
SLGGNDELSATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLN
LSRGKQDFLKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPAL
PGIRKWLKQLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIH
RKAVPGNSAELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFK
HFHSVDIQASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALGSGLNSFYDQREYIGRSVHYWKKVLPLLKIIKKKNS
IPEPIDPLFKHFHSVDIQASEIVEYEEDAHITFAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALSPEEQEECKNYL
RKTRDYLIKIIDDSDSNLSVVKKLPVPLESVKEMLNSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTRYSLSPSKSYKYSPKTPP
RWAEDQNSLLKMICQQVEAIKKEMQELKLNSSNSASPHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRP
AANVTPTKGPVYGMNRLPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALRFESPATGILSPRGDDYFNYNVQQTSTNPPLPEPGYF
TKPPIAAHASRSAESKTIEFGKTNFVQPMPGEGLRPSLPTQAHTTQPTPFKFNSNFKSNDGDFTFSSPQVVTQPPPAAYSNSESLLGLLT
SDKPLQGDGYSGAKPIPGGQTIGPRNTFNFGSKNVSGISFTENMGSSQQKNSGFRRSDDMFTFHGPGKSVFGTPTLETANKNHETDGGSA
HGDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPD
MKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQAVRIVKEPTSHDNKDICKSDAGN
LNFEFQVAKKEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPT
VSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPASF
KFGTSETSKTLKSGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSGFEGMFTKKEGQWD
CSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAV
STPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISKAPKSGFEGMFIRKGQWDCSVCC
VQNESSSLKCVACDASKPTHKPIAEAPSAFTLGSEMKLHDSSGSQVGTGFKSNFSEKASKFGNTEQGFKFGHVDQENSPSFMFQGSSNTE
FKSTKEGFSIPVSADGFKFGISEPGNQEKKSEKPLENGTGFQAQDISGQKNGRGVIFGQTSSTFTFADLAKSTSGEGFQFGKKDPNFKGF
SGAGEKLFSSQYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLK
ILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPL
QTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDSVSSS
SVHASPLASSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQV
VFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLAV
RFKLQDVADSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVEVSSTSETTPKAVVSP
PKFVFGSESVKSIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKSNNSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLFASFP
TEESSINYTFKTPEKAKEKKKPEDSPSDDDVLIVYELTPTAEQKALATKLKLPPTFFCYKNRPDYVSEEEEDDEDFETAVKKLNGKLYLD
GSEKCRPLEENTADNEKECIIVWEKKPTVEEKAKADTLKLPPTFFCGVCSDTDEDNGNGEDFQSELQKVQEAQKSQTEEITSTTDSVYTG
GTEVMVPSFCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASSNSGDFAFGSKDKNFQ
WANTGAAVFGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKIL
WHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKGH
VSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGD

--------------------------------------------------------------

>73775_73775_2_RGPD1-RANBP2_RGPD1_chr2_87203413_ENST00000409776_RANBP2_chr2_109369453_ENST00000283195_length(amino acids)=3315AA_BP=630
MNVMGFNTDRLAWTRNKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNPPQKDLVLK
IAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRLKDAVARCH
EAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKSSLGGNDEL
SATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLNLSRGKQDF
LKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPALPGIRKWLK
QLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIHRKAVPGNS
AELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQ
ASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALGSGLNSFYDQREYIGRSVHYWKKVLPLLKIIKKKNSIPEPIDPL
FKHFHSVDIQASEIVEYEEDAHITFAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALSPEEQEECKNYLRKTRDYLI
KIIDDSDSNLSVVKKLPVPLESVKEMLNSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTRYSLSPSKSYKYSPKTPPRWAEDQNS
LLKMICQQVEAIKKEMQELKLNSSNSASPHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTK
GPVYGMNRLPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALRFESPATGILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAH
ASRSAESKTIEFGKTNFVQPMPGEGLRPSLPTQAHTTQPTPFKFNSNFKSNDGDFTFSSPQVVTQPPPAAYSNSESLLGLLTSDKPLQGD
GYSGAKPIPGGQTIGPRNTFNFGSKNVSGISFTENMGSSQQKNSGFRRSDDMFTFHGPGKSVFGTPTLETANKNHETDGGSAHGDDDDDG
PHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAG
SDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQAVRIVKEPTSHDNKDICKSDAGNLNFEFQVA
KKEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPTVSRCIACQ
NTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPASFKFGTSETS
KTLKSGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSGFEGMFTKKEGQWDCSVCLVRN
EASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSET
SKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISKAPKSGFEGMFIRKGQWDCSVCCVQNESSSL
KCVACDASKPTHKPIAEAPSAFTLGSEMKLHDSSGSQVGTGFKSNFSEKASKFGNTEQGFKFGHVDQENSPSFMFQGSSNTEFKSTKEGF
SIPVSADGFKFGISEPGNQEKKSEKPLENGTGFQAQDISGQKNGRGVIFGQTSSTFTFADLAKSTSGEGFQFGKKDPNFKGFSGAGEKLF
SSQYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNG
KLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVD
TGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDSVSSSSVHASPLA
SSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKL
YRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLAVRFKLQDVA
DSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVEVSSTSETTPKAVVSPPKFVFGSE
SVKSIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKSNNSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLFASFPTEESSINY
TFKTPEKAKEKKKPEDSPSDDDVLIVYELTPTAEQKALATKLKLPPTFFCYKNRPDYVSEEEEDDEDFETAVKKLNGKLYLDGSEKCRPL
EENTADNEKECIIVWEKKPTVEEKAKADTLKLPPTFFCGVCSDTDEDNGNGEDFQSELQKVQEAQKSQTEEITSTTDSVYTGGTEVMVPS
FCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASSNSGDFAFGSKDKNFQWANTGAAV
FGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYY
RILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKGHVSLAAELS
KETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFD

--------------------------------------------------------------

>73775_73775_3_RGPD1-RANBP2_RGPD1_chr2_87203413_ENST00000559485_RANBP2_chr2_109369453_ENST00000283195_length(amino acids)=3315AA_BP=630
MNVMGFNTDRLAWTRNKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNPPQKDLVLK
IAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRLKDAVARCH
EAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKSSLGGNDEL
SATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLNLSRGKQDF
LKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPALPGIRKWLK
QLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIHRKAVPGNS
AELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQ
ASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALGSGLNSFYDQREYIGRSVHYWKKVLPLLKIIKKKNSIPEPIDPL
FKHFHSVDIQASEIVEYEEDAHITFAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALSPEEQEECKNYLRKTRDYLI
KIIDDSDSNLSVVKKLPVPLESVKEMLNSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTRYSLSPSKSYKYSPKTPPRWAEDQNS
LLKMICQQVEAIKKEMQELKLNSSNSASPHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTK
GPVYGMNRLPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALRFESPATGILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAH
ASRSAESKTIEFGKTNFVQPMPGEGLRPSLPTQAHTTQPTPFKFNSNFKSNDGDFTFSSPQVVTQPPPAAYSNSESLLGLLTSDKPLQGD
GYSGAKPIPGGQTIGPRNTFNFGSKNVSGISFTENMGSSQQKNSGFRRSDDMFTFHGPGKSVFGTPTLETANKNHETDGGSAHGDDDDDG
PHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAG
SDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQAVRIVKEPTSHDNKDICKSDAGNLNFEFQVA
KKEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPTVSRCIACQ
NTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPASFKFGTSETS
KTLKSGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSGFEGMFTKKEGQWDCSVCLVRN
EASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSET
SKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISKAPKSGFEGMFIRKGQWDCSVCCVQNESSSL
KCVACDASKPTHKPIAEAPSAFTLGSEMKLHDSSGSQVGTGFKSNFSEKASKFGNTEQGFKFGHVDQENSPSFMFQGSSNTEFKSTKEGF
SIPVSADGFKFGISEPGNQEKKSEKPLENGTGFQAQDISGQKNGRGVIFGQTSSTFTFADLAKSTSGEGFQFGKKDPNFKGFSGAGEKLF
SSQYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNG
KLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVD
TGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDSVSSSSVHASPLA
SSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKL
YRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLAVRFKLQDVA
DSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVEVSSTSETTPKAVVSPPKFVFGSE
SVKSIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKSNNSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLFASFPTEESSINY
TFKTPEKAKEKKKPEDSPSDDDVLIVYELTPTAEQKALATKLKLPPTFFCYKNRPDYVSEEEEDDEDFETAVKKLNGKLYLDGSEKCRPL
EENTADNEKECIIVWEKKPTVEEKAKADTLKLPPTFFCGVCSDTDEDNGNGEDFQSELQKVQEAQKSQTEEITSTTDSVYTGGTEVMVPS
FCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASSNSGDFAFGSKDKNFQWANTGAAV
FGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYY
RILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKGHVSLAAELS
KETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFD

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:87203413/chr2:109369453)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.RANBP2

RGPD8

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.1765

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRGPD1chr2:87203413chr2:109369453ENST00000409776+142351_84676.01749.0RepeatNote=TPR 1
HgeneRGPD1chr2:87203413chr2:109369453ENST00000409776+1423575_608676.01749.0RepeatNote=TPR 2
HgeneRGPD1chr2:87203413chr2:109369453ENST00000409776+1423639_672676.01749.0RepeatNote=TPR 3
HgeneRGPD1chr2:87203413chr2:109369453ENST00000559485+142351_84676.01749.0RepeatNote=TPR 1
HgeneRGPD1chr2:87203413chr2:109369453ENST00000559485+1423575_608676.01749.0RepeatNote=TPR 2
HgeneRGPD1chr2:87203413chr2:109369453ENST00000559485+1423639_672676.01749.0RepeatNote=TPR 3
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291171_1307585.03225.0DomainRanBD1 1
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292012_2148585.03225.0DomainRanBD1 2
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292309_2445585.03225.0DomainRanBD1 3
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292911_3046585.03225.0DomainRanBD1 4
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511293067_3223585.03225.0DomainPPIase cyclophilin-type
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291001_3206585.03225.0Region22 X 2 AA repeats of F-G
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292633_2710585.03225.0RegionNote=Required for E3 SUMO-ligase activity
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292633_2761585.03225.0RegionNote=2 X 50 AA approximate repeats
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291001_1002585.03225.0Repeat1
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291101_1102585.03225.0Repeat2
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291142_1143585.03225.0Repeat3
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291459_1460585.03225.0Repeat4
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291523_1524585.03225.0Repeat5
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291586_1587585.03225.0Repeat6
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291852_1853585.03225.0Repeat7
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291861_1862585.03225.0Repeat8
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291900_1901585.03225.0Repeat9
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291938_1939585.03225.0Repeat10
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291961_1962585.03225.0Repeat11
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292260_2261585.03225.0Repeat12
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292516_2517585.03225.0Repeat13
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292535_2536585.03225.0Repeat14
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292545_2546585.03225.0Repeat15
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292711_2761585.03225.0Repeat2
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292840_2841585.03225.0Repeat16
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292842_2843585.03225.0Repeat17
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292863_2864585.03225.0Repeat18
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511292880_2881585.03225.0Repeat19
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511293106_3107585.03225.0Repeat20
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511293189_3190585.03225.0Repeat21
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511293205_3206585.03225.0Repeat22
TgeneRANBP2chr2:87203413chr2:109369453ENST000002831951129583_616585.03225.0RepeatTPR 6
TgeneRANBP2chr2:87203413chr2:109369453ENST000002831951129648_681585.03225.0RepeatTPR 7
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291351_1381585.03225.0Zinc fingerRanBP2-type 1
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291415_1444585.03225.0Zinc fingerRanBP2-type 2
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291479_1508585.03225.0Zinc fingerRanBP2-type 3
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291543_1572585.03225.0Zinc fingerRanBP2-type 4
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291606_1635585.03225.0Zinc fingerRanBP2-type 5
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291665_1694585.03225.0Zinc fingerRanBP2-type 6
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291724_1753585.03225.0Zinc fingerRanBP2-type 7
TgeneRANBP2chr2:87203413chr2:109369453ENST0000028319511291781_1810585.03225.0Zinc fingerRanBP2-type 8

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRGPD1chr2:87203413chr2:109369453ENST00000409776+14231021_1157676.01749.0DomainRanBD1 1
HgeneRGPD1chr2:87203413chr2:109369453ENST00000409776+14231318_1454676.01749.0DomainRanBD1 2
HgeneRGPD1chr2:87203413chr2:109369453ENST00000409776+14231685_1735676.01749.0DomainGRIP
HgeneRGPD1chr2:87203413chr2:109369453ENST00000559485+14231021_1157676.01749.0DomainRanBD1 1
HgeneRGPD1chr2:87203413chr2:109369453ENST00000559485+14231318_1454676.01749.0DomainRanBD1 2
HgeneRGPD1chr2:87203413chr2:109369453ENST00000559485+14231685_1735676.01749.0DomainGRIP
TgeneRANBP2chr2:87203413chr2:109369453ENST000002831951129165_201585.03225.0RepeatTPR 4
TgeneRANBP2chr2:87203413chr2:109369453ENST00000283195112926_59585.03225.0RepeatTPR 1
TgeneRANBP2chr2:87203413chr2:109369453ENST000002831951129287_319585.03225.0RepeatTPR 5
TgeneRANBP2chr2:87203413chr2:109369453ENST00000283195112960_93585.03225.0RepeatTPR 2
TgeneRANBP2chr2:87203413chr2:109369453ENST00000283195112994_128585.03225.0RepeatTPR 3


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Fusion Protein Structures

check button PDB and CIF files of the predicted fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Fusion protein PDB link (fusion AA seq ID in FusionPDB)HgeneHchrHbpHstrandTgeneTchrTbpTstrandAA seqLen(AA seq)


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pLDDT score distribution

check button pLDDT score distribution of the predicted wild-type structures of two partner proteins from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
RGPD1_pLDDT.png
all structure
all structure
RANBP2_pLDDT.png
all structure
all structure

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.


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Ramachandran Plot of Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.
Fusion AA seq ID in FusionPDB and their Ramachandran plots

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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors
RANBP2UBE2I, KPNB1, KPNA1, RAN, Ube2i, OPN1LW, Psmd4, Psmc6, Psmd1, CDC73, AIRE, PARK2, LRPAP1, APC, TAF1, IFT140, AKAP13, FHOD1, ARID4B, CDCA8, HDAC4, tat, RANGAP1, MYC, Plk1, Ranbp2, Kifc5b, CALM1, CEBPA, PSMD1, SIRT7, SENP1, TP53, RAPGEF3, KIFAP3, KIF3A, TOP2B, KIF5B, KIF5C, SP100, NUP214, NUP153, Rangap1, PML, CUL2, NXF1, MATR3, ILF2, EEF1A1, HNRNPK, HNRNPF, HNRNPM, DDX17, SMU1, RRS1, CHMP2A, FLNA, IK, HNRNPH1, DHX15, DHX9, RPS14, TRIM55, PRKDC, M6PR, RRP7A, HSPA1L, ALB, vpu, MMS19, LMNA, ADRB2, BAG3, KPNA2, CUL1, SUMO1, SUMO2, NLK, UBTD1, LGR4, CHFR, CUL7, OBSL1, CCDC8, SUZ12, EED, RNF2, BMI1, RANBP2, NUP62, NUSAP1, COMTD1, SCGN, NUP50, RCC1, ZACN, IER2, FBXW11, CLTC, EFTUD2, IPO5, COL4A3BP, HNRNPC, MED13, PRPF8, PTGES3, RALY, RPLP0, SNRNP200, SRRM1, TOP2A, TUBB, UQCRC2, VCP, KIF3B, NUP43, NUP85, NUP107, NUP133, NUP160, NUP35, NUPL1, SEH1L, Mad2l1, Rcc1, Nup107, Cenpf, Kifc1, Nup155, Nup214, Nup98, FOXB1, CRY2, FOXL1, PRMT5, FOXQ1, WAS, UBA2, MCM2, SNW1, CDC5L, NFATC2, ZNF746, CTDSPL2, PPM1D, B2M, TMEM194A, TRAF3IP3, MDM2, TES, CFTR, MAP2K7, UBE2M, EGLN3, CTNNB1, SLC25A1, BCL2L1, HSPA8, UBE2L6, PIH1D1, TNIP2, RNF4, RNF31, CDC34, ESR2, EZH2, RECQL4, DCPS, WDR76, HIST1H4A, HIST1H2BB, KIAA1429, ATG16L1, RBX1, H2AFX, TPT1, TRADD, NR2C2, GBF1, BICD2, AK3, TNFSF13B, DUSP2, RHBDD1, RHBDF2, BIRC3, LMBR1L, TRIM28, PLEKHA4, MAGEA3, PINK1, FANCD2, PTEN, RALB, EMC1, EMC2, MMGT1, PLBD1, HSPD1, DNAAF3, RAD50, ANKRD55, ESR1, MAU2, MYBPC2, PDLIM3, HSCB, CIT, KIF14, KIF20A, PRC1, NDN, NFX1, RSAD2, NUPR1, C18orf8, CIC, BRD4, LGALS9, KDF1, PCNA, RECQL5, SYNE3, NFKBIA, HTRA4, DDX39A, WDR5, DAXX, NAA40, RGPD1, NPIPB6, PIP, ESRP1, S100A6, BTF3, SLFN11, RCHY1, SIRT6, PLK1, ARRB2,


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
RGPD1
RANBP2all structure


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to RGPD1-RANBP2


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to RGPD1-RANBP2


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneRANBP2C2675556ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 33CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
TgeneRANBP2C0334121Inflammatory Myofibroblastic Tumor2CTD_human;ORPHANET
TgeneRANBP2C0018199Granuloma, Plasma Cell1CTD_human
TgeneRANBP2C4706387Acute necrotizing encephalopathy of childhood1ORPHANET