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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:CD58-RAD51B

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: CD58-RAD51B
FusionPDB ID: 14564
FusionGDB2.0 ID: 14564
HgeneTgene
Gene symbol

CD58

RAD51B

Gene ID

965

5890

Gene nameCD58 moleculeRAD51 paralog B
SynonymsLFA-3|LFA3|ag3R51H2|RAD51L1|REC2
Cytomap

1p13.1

14q24.1

Type of geneprotein-codingprotein-coding
Descriptionlymphocyte function-associated antigen 3CD58 antigen, (lymphocyte function-associated antigen 3)surface glycoprotein LFA-3DNA repair protein RAD51 homolog 2RAD51 homolog BRecA-like proteinrecombination repair protein
Modification date2020031320200313
UniProtAcc

P19256

O15315

Ensembl transtripts involved in fusion geneENST idsENST00000369487, ENST00000369489, 
ENST00000457047, 
ENST00000469165, 
ENST00000390683, ENST00000471583, 
ENST00000487270, ENST00000487861, 
ENST00000488612, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score6 X 5 X 5=15041 X 23 X 12=11316
# samples 656
** MAII scorelog2(6/150*10)=-1.32192809488736
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(56/11316*10)=-4.33679344445129
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: CD58 [Title/Abstract] AND RAD51B [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)CD58(117113525)-RAD51B(68758601), # samples:2
Anticipated loss of major functional domain due to fusion event.CD58-RAD51B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
CD58-RAD51B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCD58

GO:0034113

heterotypic cell-cell adhesion

15345303

HgeneCD58

GO:0071346

cellular response to interferon-gamma

19109405

HgeneCD58

GO:0071356

cellular response to tumor necrosis factor

19109405


check buttonFusion gene breakpoints across CD58 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across RAD51B (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-B6-A400-01ACD58chr1

117113525

-RAD51Bchr14

68758601

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000369489CD58chr1117113525-ENST00000487861RAD51Bchr1468758601+97713711658215
ENST00000369489CD58chr1117113525-ENST00000471583RAD51Bchr1468758601+86913711433140
ENST00000369489CD58chr1117113525-ENST00000487270RAD51Bchr1468758601+192913711535174
ENST00000369489CD58chr1117113525-ENST00000488612RAD51Bchr1468758601+90413711481156
ENST00000369489CD58chr1117113525-ENST00000390683RAD51Bchr1468758601+48213711481157
ENST00000457047CD58chr1117113525-ENST00000487861RAD51Bchr1468758601+96412410645211
ENST00000457047CD58chr1117113525-ENST00000471583RAD51Bchr1468758601+85612410420136
ENST00000457047CD58chr1117113525-ENST00000487270RAD51Bchr1468758601+191612410522170
ENST00000457047CD58chr1117113525-ENST00000488612RAD51Bchr1468758601+89112410468152
ENST00000457047CD58chr1117113525-ENST00000390683RAD51Bchr1468758601+46912410468153
ENST00000369487CD58chr1117113525-ENST00000487861RAD51Bchr1468758601+97713711658215
ENST00000369487CD58chr1117113525-ENST00000471583RAD51Bchr1468758601+86913711433140
ENST00000369487CD58chr1117113525-ENST00000487270RAD51Bchr1468758601+192913711535174
ENST00000369487CD58chr1117113525-ENST00000488612RAD51Bchr1468758601+90413711481156
ENST00000369487CD58chr1117113525-ENST00000390683RAD51Bchr1468758601+48213711481157

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000369489ENST00000487861CD58chr1117113525-RAD51Bchr1468758601+0.61469280.38530725
ENST00000369489ENST00000471583CD58chr1117113525-RAD51Bchr1468758601+0.60947650.39052346
ENST00000369489ENST00000487270CD58chr1117113525-RAD51Bchr1468758601+0.70213240.29786763
ENST00000369489ENST00000488612CD58chr1117113525-RAD51Bchr1468758601+0.169215650.8307843
ENST00000369489ENST00000390683CD58chr1117113525-RAD51Bchr1468758601+0.441858740.55814123
ENST00000457047ENST00000487861CD58chr1117113525-RAD51Bchr1468758601+0.64664750.35335252
ENST00000457047ENST00000471583CD58chr1117113525-RAD51Bchr1468758601+0.600957450.39904255
ENST00000457047ENST00000487270CD58chr1117113525-RAD51Bchr1468758601+0.72461180.27538815
ENST00000457047ENST00000488612CD58chr1117113525-RAD51Bchr1468758601+0.123059030.876941
ENST00000457047ENST00000390683CD58chr1117113525-RAD51Bchr1468758601+0.463095870.53690416
ENST00000369487ENST00000487861CD58chr1117113525-RAD51Bchr1468758601+0.61469280.38530725
ENST00000369487ENST00000471583CD58chr1117113525-RAD51Bchr1468758601+0.60947650.39052346
ENST00000369487ENST00000487270CD58chr1117113525-RAD51Bchr1468758601+0.70213240.29786763
ENST00000369487ENST00000488612CD58chr1117113525-RAD51Bchr1468758601+0.169215650.8307843
ENST00000369487ENST00000390683CD58chr1117113525-RAD51Bchr1468758601+0.441858740.55814123

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>14564_14564_1_CD58-RAD51B_CD58_chr1_117113525_ENST00000369487_RAD51B_chr14_68758601_ENST00000390683_length(amino acids)=157AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_2_CD58-RAD51B_CD58_chr1_117113525_ENST00000369487_RAD51B_chr14_68758601_ENST00000471583_length(amino acids)=140AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_3_CD58-RAD51B_CD58_chr1_117113525_ENST00000369487_RAD51B_chr14_68758601_ENST00000487270_length(amino acids)=174AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_4_CD58-RAD51B_CD58_chr1_117113525_ENST00000369487_RAD51B_chr14_68758601_ENST00000487861_length(amino acids)=215AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSV

--------------------------------------------------------------

>14564_14564_5_CD58-RAD51B_CD58_chr1_117113525_ENST00000369487_RAD51B_chr14_68758601_ENST00000488612_length(amino acids)=156AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_6_CD58-RAD51B_CD58_chr1_117113525_ENST00000369489_RAD51B_chr14_68758601_ENST00000390683_length(amino acids)=157AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_7_CD58-RAD51B_CD58_chr1_117113525_ENST00000369489_RAD51B_chr14_68758601_ENST00000471583_length(amino acids)=140AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_8_CD58-RAD51B_CD58_chr1_117113525_ENST00000369489_RAD51B_chr14_68758601_ENST00000487270_length(amino acids)=174AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_9_CD58-RAD51B_CD58_chr1_117113525_ENST00000369489_RAD51B_chr14_68758601_ENST00000487861_length(amino acids)=215AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSV

--------------------------------------------------------------

>14564_14564_10_CD58-RAD51B_CD58_chr1_117113525_ENST00000369489_RAD51B_chr14_68758601_ENST00000488612_length(amino acids)=156AA_BP=42
MNLGLLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW

--------------------------------------------------------------

>14564_14564_11_CD58-RAD51B_CD58_chr1_117113525_ENST00000457047_RAD51B_chr14_68758601_ENST00000390683_length(amino acids)=153AA_BP=38
MLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV

--------------------------------------------------------------

>14564_14564_12_CD58-RAD51B_CD58_chr1_117113525_ENST00000457047_RAD51B_chr14_68758601_ENST00000471583_length(amino acids)=136AA_BP=38
MLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV

--------------------------------------------------------------

>14564_14564_13_CD58-RAD51B_CD58_chr1_117113525_ENST00000457047_RAD51B_chr14_68758601_ENST00000487270_length(amino acids)=170AA_BP=38
MLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV

--------------------------------------------------------------

>14564_14564_14_CD58-RAD51B_CD58_chr1_117113525_ENST00000457047_RAD51B_chr14_68758601_ENST00000487861_length(amino acids)=211AA_BP=38
MLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV
NTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCP

--------------------------------------------------------------

>14564_14564_15_CD58-RAD51B_CD58_chr1_117113525_ENST00000457047_RAD51B_chr14_68758601_ENST00000488612_length(amino acids)=152AA_BP=38
MLVAGHSRRGRPDEPWLLGATRGGPWGSSAWSACCTALVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:117113525/chr14:68758601)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CD58

P19256

RAD51B

O15315

FUNCTION: Ligand of the T-lymphocyte CD2 glycoprotein. This interaction is important in mediating thymocyte interactions with thymic epithelial cells, antigen-independent and -dependent interactions of T-lymphocytes with target cells and antigen-presenting cells and the T-lymphocyte rosetting with erythrocytes. In addition, the LFA-3/CD2 interaction may prime response by both the CD2+ and LFA-3+ cells.FUNCTION: Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. May promote the assembly of presynaptic RAD51 nucleoprotein filaments. Binds single-stranded DNA and double-stranded DNA and has DNA-dependent ATPase activity. Part of the RAD21 paralog protein complex BCDX2 which acts in the BRCA1-BRCA2-dependent HR pathway. Upon DNA damage, BCDX2 acts downstream of BRCA2 recruitment and upstream of RAD51 recruitment. BCDX2 binds predominantly to the intersection of the four duplex arms of the Holliday junction and to junction of replication forks. The BCDX2 complex was originally reported to bind single-stranded DNA, single-stranded gaps in duplex DNA and specifically to nicks in duplex DNA. The BCDX2 subcomplex RAD51B:RAD51C exhibits single-stranded DNA-dependent ATPase activity suggesting an involvement in early stages of the HR pathway. {ECO:0000269|PubMed:11751635, ECO:0000269|PubMed:11751636, ECO:0000269|PubMed:11842113, ECO:0000269|PubMed:12441335, ECO:0000269|PubMed:23108668, ECO:0000269|PubMed:23149936}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCD58chr1:117113525chr14:68758601ENST00000369489-1630_12123.333333333333332251.0DomainNote=Ig-like
HgeneCD58chr1:117113525chr14:68758601ENST00000457047-1530_12123.333333333333332249.0DomainNote=Ig-like
HgeneCD58chr1:117113525chr14:68758601ENST00000369489-16239_25023.333333333333332251.0Topological domainCytoplasmic
HgeneCD58chr1:117113525chr14:68758601ENST00000369489-1629_21523.333333333333332251.0Topological domainExtracellular
HgeneCD58chr1:117113525chr14:68758601ENST00000457047-15239_25023.333333333333332249.0Topological domainCytoplasmic
HgeneCD58chr1:117113525chr14:68758601ENST00000457047-1529_21523.333333333333332249.0Topological domainExtracellular
HgeneCD58chr1:117113525chr14:68758601ENST00000369489-16216_23823.333333333333332251.0TransmembraneHelical
HgeneCD58chr1:117113525chr14:68758601ENST00000457047-15216_23823.333333333333332249.0TransmembraneHelical
TgeneRAD51Bchr1:117113525chr14:68758601ENST00000390683510108_115252.0367.0Nucleotide bindingATP
TgeneRAD51Bchr1:117113525chr14:68758601ENST00000471583611108_115252.0351.0Nucleotide bindingATP
TgeneRAD51Bchr1:117113525chr14:68758601ENST00000487270611108_115252.0385.0Nucleotide bindingATP
TgeneRAD51Bchr1:117113525chr14:68758601ENST00000488612612108_115252.0495.6666666666667Nucleotide bindingATP


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors
RAD51BRAD51, RAD51C, RAD51D, XRCC2, SWSAP1, FAM9B, DKKL1, ARL4C, MUC20, ADAMTS4, HELQ, HNRNPL, SPDL1, BRCA1, TPT1, ABL1, MEOX2, RPAIN, ANAPC5, BAGE2, C15orf39, PRPF6, C5orf34, N4BP2L2, BANP, ANKHD1-EIF4EBP3, KLRC2, DSCC1, SATB2, ZNHIT6, PMS1, NUF2, APAF1, PRKACB, MAPRE2, CD300LB, PRKACG, TBC1D2B, MTR,


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
CD58
RAD51Ball structure


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
TgeneRAD51Bchr1:117113525chr14:68758601ENST000003906835101_75252.0367.0RAD51C
TgeneRAD51Bchr1:117113525chr14:68758601ENST000004715836111_75252.0351.0RAD51C
TgeneRAD51Bchr1:117113525chr14:68758601ENST000004872706111_75252.0385.0RAD51C
TgeneRAD51Bchr1:117113525chr14:68758601ENST000004886126121_75252.0495.6666666666667RAD51C


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Related Drugs to CD58-RAD51B


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to CD58-RAD51B


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneRAD51BC0006142Malignant neoplasm of breast1CTD_human
TgeneRAD51BC0013146Drug abuse1CTD_human
TgeneRAD51BC0013170Drug habituation1CTD_human
TgeneRAD51BC0013222Drug Use Disorders1CTD_human
TgeneRAD51BC0029231Organic Mental Disorders, Substance-Induced1CTD_human
TgeneRAD51BC0038580Substance Dependence1CTD_human
TgeneRAD51BC0038586Substance Use Disorders1CTD_human
TgeneRAD51BC0236969Substance-Related Disorders1CTD_human
TgeneRAD51BC0238033Carcinoma of Male Breast1CTD_human
TgeneRAD51BC0242788Breast Neoplasms, Male1CTD_human
TgeneRAD51BC0678222Breast Carcinoma1CTD_human
TgeneRAD51BC0740858Substance abuse problem1CTD_human
TgeneRAD51BC1257931Mammary Neoplasms, Human1CTD_human
TgeneRAD51BC1458155Mammary Neoplasms1CTD_human
TgeneRAD51BC1510472Drug Dependence1CTD_human
TgeneRAD51BC4316881Prescription Drug Abuse1CTD_human
TgeneRAD51BC4704874Mammary Carcinoma, Human1CTD_human