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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:CDC42BPA-C5

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: CDC42BPA-C5
FusionPDB ID: 14832
FusionGDB2.0 ID: 14832
HgeneTgene
Gene symbol

CDC42BPA

C5

Gene ID

8476

727

Gene nameCDC42 binding protein kinase alphacomplement C5
SynonymsMRCK|MRCKA|PK428C5D|C5a|C5b|CPAMD4|ECLZB
Cytomap

1q42.13

9q33.2

Type of geneprotein-codingprotein-coding
Descriptionserine/threonine-protein kinase MRCK alphaCDC42 binding protein kinase alpha (DMPK-like)CDC42 binding protein kinase betamyotonic dystrophy kinase-related CDC42-binding protein kinase alphamyotonic dystrophy protein kinase-like alphaser-thr protein kcomplement C5C3 and PZP-like alpha-2-macroglobulin domain-containing protein 4C5a anaphylatoxinanaphylatoxin C5a analogcomplement component 5prepro-C5
Modification date2020031320200313
UniProtAcc

Q5VT25

F2Z3F1

Ensembl transtripts involved in fusion geneENST idsENST00000334218, ENST00000366764, 
ENST00000366765, ENST00000366766, 
ENST00000366767, ENST00000366769, 
ENST00000535525, ENST00000488131, 
ENST00000466280, ENST00000223642, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score14 X 12 X 9=15124 X 5 X 4=80
# samples 155
** MAII scorelog2(15/1512*10)=-3.33342373372519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(5/80*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: CDC42BPA [Title/Abstract] AND C5 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)CDC42BPA(227504706)-C5(123780130), # samples:2
Anticipated loss of major functional domain due to fusion event.CDC42BPA-C5 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
CDC42BPA-C5 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
CDC42BPA-C5 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
CDC42BPA-C5 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCDC42BPA

GO:0006468

protein phosphorylation

9092543

HgeneCDC42BPA

GO:0031532

actin cytoskeleton reorganization

9418861

TgeneC5

GO:0010575

positive regulation of vascular endothelial growth factor production

14566334|16452172

TgeneC5

GO:0010760

negative regulation of macrophage chemotaxis

14566334

TgeneC5

GO:0090197

positive regulation of chemokine secretion

14566334


check buttonFusion gene breakpoints across CDC42BPA (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across C5 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LUADTCGA-05-4427-01ACDC42BPAchr1

227504706

-C5chr9

123780130

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000366767CDC42BPAchr1227504706-ENST00000223642C5chr9123780130-410417827137021143
ENST00000366769CDC42BPAchr1227504706-ENST00000223642C5chr9123780130-53961470156349941143
ENST00000366764CDC42BPAchr1227504706-ENST00000223642C5chr9123780130-50471121121446451143
ENST00000334218CDC42BPAchr1227504706-ENST00000223642C5chr9123780130-50471121121446451143
ENST00000366766CDC42BPAchr1227504706-ENST00000223642C5chr9123780130-50471121121446451143
ENST00000535525CDC42BPAchr1227504706-ENST00000223642C5chr9123780130-413120529837291143
ENST00000366765CDC42BPAchr1227504706-ENST00000223642C5chr9123780130-463671080342341143

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000366767ENST00000223642CDC42BPAchr1227504706-C5chr9123780130-0.0002722590.9997278
ENST00000366769ENST00000223642CDC42BPAchr1227504706-C5chr9123780130-0.0010020440.998998
ENST00000366764ENST00000223642CDC42BPAchr1227504706-C5chr9123780130-0.0006429420.99935704
ENST00000334218ENST00000223642CDC42BPAchr1227504706-C5chr9123780130-0.0006429420.99935704
ENST00000366766ENST00000223642CDC42BPAchr1227504706-C5chr9123780130-0.0006429420.99935704
ENST00000535525ENST00000223642CDC42BPAchr1227504706-C5chr9123780130-0.0002934790.99970645
ENST00000366765ENST00000223642CDC42BPAchr1227504706-C5chr9123780130-0.0003965870.99960345

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>14832_14832_1_CDC42BPA-C5_CDC42BPA_chr1_227504706_ENST00000334218_C5_chr9_123780130_ENST00000223642_length(amino acids)=1143AA_BP=
MVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERV
FQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQ
RAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVG
ISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSS
HLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLL
VGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGS
ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK
IDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAY
ALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLN
DDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS
ANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGA
ACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVK

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>14832_14832_2_CDC42BPA-C5_CDC42BPA_chr1_227504706_ENST00000366764_C5_chr9_123780130_ENST00000223642_length(amino acids)=1143AA_BP=
MVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERV
FQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQ
RAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVG
ISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSS
HLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLL
VGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGS
ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK
IDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAY
ALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLN
DDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS
ANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGA
ACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVK

--------------------------------------------------------------

>14832_14832_3_CDC42BPA-C5_CDC42BPA_chr1_227504706_ENST00000366765_C5_chr9_123780130_ENST00000223642_length(amino acids)=1143AA_BP=
MVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERV
FQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQ
RAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVG
ISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSS
HLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLL
VGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGS
ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK
IDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAY
ALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLN
DDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS
ANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGA
ACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVK

--------------------------------------------------------------

>14832_14832_4_CDC42BPA-C5_CDC42BPA_chr1_227504706_ENST00000366766_C5_chr9_123780130_ENST00000223642_length(amino acids)=1143AA_BP=
MVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERV
FQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQ
RAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVG
ISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSS
HLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLL
VGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGS
ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK
IDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAY
ALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLN
DDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS
ANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGA
ACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVK

--------------------------------------------------------------

>14832_14832_5_CDC42BPA-C5_CDC42BPA_chr1_227504706_ENST00000366767_C5_chr9_123780130_ENST00000223642_length(amino acids)=1143AA_BP=
MVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERV
FQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQ
RAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVG
ISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSS
HLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLL
VGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGS
ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK
IDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAY
ALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLN
DDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS
ANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGA
ACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVK

--------------------------------------------------------------

>14832_14832_6_CDC42BPA-C5_CDC42BPA_chr1_227504706_ENST00000366769_C5_chr9_123780130_ENST00000223642_length(amino acids)=1143AA_BP=
MVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERV
FQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQ
RAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVG
ISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSS
HLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLL
VGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGS
ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK
IDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAY
ALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLN
DDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS
ANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGA
ACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVK

--------------------------------------------------------------

>14832_14832_7_CDC42BPA-C5_CDC42BPA_chr1_227504706_ENST00000535525_C5_chr9_123780130_ENST00000223642_length(amino acids)=1143AA_BP=
MVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERV
FQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQ
RAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVG
ISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSS
HLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLL
VGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGS
ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK
IDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAY
ALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLN
DDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS
ANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGA
ACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVK

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:227504706/chr9:123780130)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CDC42BPA

Q5VT25

C5

F2Z3F1

FUNCTION: Serine/threonine-protein kinase which is an important downstream effector of CDC42 and plays a role in the regulation of cytoskeleton reorganization and cell migration (PubMed:15723050, PubMed:9418861, PubMed:9092543). Regulates actin cytoskeletal reorganization via phosphorylation of PPP1R12C and MYL9/MLC2 (PubMed:21457715). In concert with MYO18A and LURAP1, is involved in modulating lamellar actomyosin retrograde flow that is crucial to cell protrusion and migration (PubMed:18854160). Phosphorylates: PPP1R12A, LIMK1 and LIMK2 (PubMed:11340065, PubMed:11399775). May play a role in TFRC-mediated iron uptake (PubMed:20188707). In concert with FAM89B/LRAP25 mediates the targeting of LIMK1 to the lamellipodium resulting in its activation and subsequent phosphorylation of CFL1 which is important for lamellipodial F-actin regulation (By similarity). Triggers the formation of an extrusion apical actin ring required for epithelial extrusion of apoptotic cells (PubMed:29162624). {ECO:0000250|UniProtKB:Q3UU96, ECO:0000269|PubMed:11340065, ECO:0000269|PubMed:11399775, ECO:0000269|PubMed:15723050, ECO:0000269|PubMed:18854160, ECO:0000269|PubMed:20188707, ECO:0000269|PubMed:21457715, ECO:0000269|PubMed:29162624, ECO:0000269|PubMed:9092543, ECO:0000269|PubMed:9418861}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneC5chr1:227504706chr9:123780130ENST0000022364211411532_1676502.01677.0DomainNTR
TgeneC5chr1:227504706chr9:123780130ENST000002236421141698_732502.01677.0DomainAnaphylatoxin-like
TgeneC5chr1:227504706chr9:123780130ENST000002236421141692_721502.01677.0RegionInvolved in C5AR1 binding

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-137437_82059.3333333333333361782.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-137880_94359.3333333333333361782.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-135437_82059.3333333333333361692.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-135880_94359.3333333333333361692.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-137437_82059.3333333333333361733.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-137880_94359.3333333333333361733.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-137437_82059.3333333333333361755.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-137880_94359.3333333333333361755.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-135437_82059.3333333333333361639.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-135880_94359.3333333333333361639.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-136437_82059.3333333333333361720.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-136880_94359.3333333333333361720.0Coiled coilOntology_term=ECO:0000255
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-1371082_120159.3333333333333361782.0DomainPH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-1371227_149959.3333333333333361782.0DomainCNH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-1371571_158459.3333333333333361782.0DomainCRIB
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-137344_41459.3333333333333361782.0DomainAGC-kinase C-terminal
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-13777_34359.3333333333333361782.0DomainProtein kinase
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-1351082_120159.3333333333333361692.0DomainPH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-1351227_149959.3333333333333361692.0DomainCNH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-1351571_158459.3333333333333361692.0DomainCRIB
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-135344_41459.3333333333333361692.0DomainAGC-kinase C-terminal
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-13577_34359.3333333333333361692.0DomainProtein kinase
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-1371082_120159.3333333333333361733.0DomainPH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-1371227_149959.3333333333333361733.0DomainCNH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-1371571_158459.3333333333333361733.0DomainCRIB
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-137344_41459.3333333333333361733.0DomainAGC-kinase C-terminal
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-13777_34359.3333333333333361733.0DomainProtein kinase
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-1371082_120159.3333333333333361755.0DomainPH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-1371227_149959.3333333333333361755.0DomainCNH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-1371571_158459.3333333333333361755.0DomainCRIB
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-137344_41459.3333333333333361755.0DomainAGC-kinase C-terminal
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-13777_34359.3333333333333361755.0DomainProtein kinase
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-1351082_120159.3333333333333361639.0DomainPH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-1351227_149959.3333333333333361639.0DomainCNH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-1351571_158459.3333333333333361639.0DomainCRIB
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-135344_41459.3333333333333361639.0DomainAGC-kinase C-terminal
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-13577_34359.3333333333333361639.0DomainProtein kinase
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-1361082_120159.3333333333333361720.0DomainPH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-1361227_149959.3333333333333361720.0DomainCNH
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-1361571_158459.3333333333333361720.0DomainCRIB
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-136344_41459.3333333333333361720.0DomainAGC-kinase C-terminal
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-13677_34359.3333333333333361720.0DomainProtein kinase
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-13783_9159.3333333333333361782.0Nucleotide bindingATP
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-13583_9159.3333333333333361692.0Nucleotide bindingATP
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-13783_9159.3333333333333361733.0Nucleotide bindingATP
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-13783_9159.3333333333333361755.0Nucleotide bindingATP
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-13583_9159.3333333333333361639.0Nucleotide bindingATP
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-13683_9159.3333333333333361720.0Nucleotide bindingATP
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000334218-1371012_106259.3333333333333361782.0Zinc fingerPhorbol-ester/DAG-type
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366764-1351012_106259.3333333333333361692.0Zinc fingerPhorbol-ester/DAG-type
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366765-1371012_106259.3333333333333361733.0Zinc fingerPhorbol-ester/DAG-type
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366766-1371012_106259.3333333333333361755.0Zinc fingerPhorbol-ester/DAG-type
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366767-1351012_106259.3333333333333361639.0Zinc fingerPhorbol-ester/DAG-type
HgeneCDC42BPAchr1:227504706chr9:123780130ENST00000366769-1361012_106259.3333333333333361720.0Zinc fingerPhorbol-ester/DAG-type


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
CDC42BPA
C5


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to CDC42BPA-C5


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to CDC42BPA-C5


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource