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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:ACSL5-VTI1A

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: ACSL5-VTI1A
FusionPDB ID: 1518
FusionGDB2.0 ID: 1518
HgeneTgene
Gene symbol

ACSL5

VTI1A

Gene ID

51703

143187

Gene nameacyl-CoA synthetase long chain family member 5vesicle transport through interaction with t-SNAREs 1A
SynonymsACS2|ACS5|FACL5MMDS3|MVti1|VTI1RP2|Vti1-rp2
Cytomap

10q25.2

10q25.2

Type of geneprotein-codingprotein-coding
Descriptionlong-chain-fatty-acid--CoA ligase 5FACL5 for fatty acid coenzyme A ligase 5LACS 5arachidonate--CoA ligasefatty acid coenzyme A ligase 5fatty-acid-Coenzyme A ligase, long-chain 5long-chain acyl-CoA synthetase 5long-chain fatty acid coenzyme A ligasevesicle transport through interaction with t-SNAREs homolog 1ASNARE Vti1a-beta proteinvesicle transport v-SNARE protein Vti1-like 2
Modification date2020031320200313
UniProtAcc

Q9ULC5

Q96AJ9

Ensembl transtripts involved in fusion geneENST idsENST00000479936, ENST00000354273, 
ENST00000354655, ENST00000356116, 
ENST00000393081, ENST00000433418, 
ENST00000369410, 
ENST00000393077, 
ENST00000432306, ENST00000483122, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score6 X 6 X 5=18017 X 15 X 10=2550
# samples 624
** MAII scorelog2(6/180*10)=-1.58496250072116
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(24/2550*10)=-3.4093909361377
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: ACSL5 [Title/Abstract] AND VTI1A [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)VTI1A(114224416)-ACSL5(114154676), # samples:2
ACSL5(114164564)-VTI1A(114286845), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneACSL5

GO:0001676

long-chain fatty acid metabolic process

24269233

TgeneVTI1A

GO:0042147

retrograde transport, endosome to Golgi

15215310|18195106


check buttonFusion gene breakpoints across ACSL5 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across VTI1A (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-HU-A4GPACSL5chr10

114164564

+VTI1Achr10

114286845

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000354655ACSL5chr10114164564+ENST00000432306VTI1Achr10114286845+20717132541060268
ENST00000354655ACSL5chr10114164564+ENST00000393077VTI1Achr10114286845+44647132541102282
ENST00000393081ACSL5chr10114164564+ENST00000432306VTI1Achr10114286845+20977392801086268
ENST00000393081ACSL5chr10114164564+ENST00000393077VTI1Achr10114286845+44907392801128282
ENST00000433418ACSL5chr10114164564+ENST00000432306VTI1Achr10114286845+2070712491059336
ENST00000433418ACSL5chr10114164564+ENST00000393077VTI1Achr10114286845+4463712491101350
ENST00000356116ACSL5chr10114164564+ENST00000432306VTI1Achr10114286845+2070712491059336
ENST00000356116ACSL5chr10114164564+ENST00000393077VTI1Achr10114286845+4463712491101350
ENST00000354273ACSL5chr10114164564+ENST00000432306VTI1Achr10114286845+2069711481058336
ENST00000354273ACSL5chr10114164564+ENST00000393077VTI1Achr10114286845+4462711481100350

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000354655ENST00000432306ACSL5chr10114164564+VTI1Achr10114286845+0.0005533910.9994466
ENST00000354655ENST00000393077ACSL5chr10114164564+VTI1Achr10114286845+0.000337050.999663
ENST00000393081ENST00000432306ACSL5chr10114164564+VTI1Achr10114286845+0.0007232910.9992767
ENST00000393081ENST00000393077ACSL5chr10114164564+VTI1Achr10114286845+0.0004695050.99953055
ENST00000433418ENST00000432306ACSL5chr10114164564+VTI1Achr10114286845+0.0017366450.9982634
ENST00000433418ENST00000393077ACSL5chr10114164564+VTI1Achr10114286845+0.0010297040.99897027
ENST00000356116ENST00000432306ACSL5chr10114164564+VTI1Achr10114286845+0.0017366450.9982634
ENST00000356116ENST00000393077ACSL5chr10114164564+VTI1Achr10114286845+0.0010297040.99897027
ENST00000354273ENST00000432306ACSL5chr10114164564+VTI1Achr10114286845+0.0017491820.9982508
ENST00000354273ENST00000393077ACSL5chr10114164564+VTI1Achr10114286845+0.0010352170.9989648

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>1518_1518_1_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000354273_VTI1A_chr10_114286845_ENST00000393077_length(amino acids)=350AA_BP=1
MTRDSSEQGRTGDTLGRPSACMDALKPPCLWRNHERGKKDRDSCGRKNSEPGSPHSLEALRDAAPSQGLNFLLLFTKMLFIFNFLFSPLP
TPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVFQRGLAVSDNGPCLGYRKPNQPY
RWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQ

--------------------------------------------------------------

>1518_1518_2_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000354273_VTI1A_chr10_114286845_ENST00000432306_length(amino acids)=336AA_BP=1
MTRDSSEQGRTGDTLGRPSACMDALKPPCLWRNHERGKKDRDSCGRKNSEPGSPHSLEALRDAAPSQGLNFLLLFTKMLFIFNFLFSPLP
TPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVFQRGLAVSDNGPCLGYRKPNQPY
RWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQ

--------------------------------------------------------------

>1518_1518_3_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000354655_VTI1A_chr10_114286845_ENST00000393077_length(amino acids)=282AA_BP=1
MNFLLLFTKMLFIFNFLFSPLPTPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVF
QRGLAVSDNGPCLGYRKPNQPYRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQR
AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVIT

--------------------------------------------------------------

>1518_1518_4_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000354655_VTI1A_chr10_114286845_ENST00000432306_length(amino acids)=268AA_BP=1
MNFLLLFTKMLFIFNFLFSPLPTPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVF
QRGLAVSDNGPCLGYRKPNQPYRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQR

--------------------------------------------------------------

>1518_1518_5_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000356116_VTI1A_chr10_114286845_ENST00000393077_length(amino acids)=350AA_BP=1
MTRDSSEQGRTGDTLGRPSACMDALKPPCLWRNHERGKKDRDSCGRKNSEPGSPHSLEALRDAAPSQGLNFLLLFTKMLFIFNFLFSPLP
TPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVFQRGLAVSDNGPCLGYRKPNQPY
RWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQ

--------------------------------------------------------------

>1518_1518_6_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000356116_VTI1A_chr10_114286845_ENST00000432306_length(amino acids)=336AA_BP=1
MTRDSSEQGRTGDTLGRPSACMDALKPPCLWRNHERGKKDRDSCGRKNSEPGSPHSLEALRDAAPSQGLNFLLLFTKMLFIFNFLFSPLP
TPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVFQRGLAVSDNGPCLGYRKPNQPY
RWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQ

--------------------------------------------------------------

>1518_1518_7_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000393081_VTI1A_chr10_114286845_ENST00000393077_length(amino acids)=282AA_BP=1
MNFLLLFTKMLFIFNFLFSPLPTPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVF
QRGLAVSDNGPCLGYRKPNQPYRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQR
AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVIT

--------------------------------------------------------------

>1518_1518_8_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000393081_VTI1A_chr10_114286845_ENST00000432306_length(amino acids)=268AA_BP=1
MNFLLLFTKMLFIFNFLFSPLPTPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVF
QRGLAVSDNGPCLGYRKPNQPYRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQR

--------------------------------------------------------------

>1518_1518_9_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000433418_VTI1A_chr10_114286845_ENST00000393077_length(amino acids)=350AA_BP=1
MTRDSSEQGRTGDTLGRPSACMDALKPPCLWRNHERGKKDRDSCGRKNSEPGSPHSLEALRDAAPSQGLNFLLLFTKMLFIFNFLFSPLP
TPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVFQRGLAVSDNGPCLGYRKPNQPY
RWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQ

--------------------------------------------------------------

>1518_1518_10_ACSL5-VTI1A_ACSL5_chr10_114164564_ENST00000433418_VTI1A_chr10_114286845_ENST00000432306_length(amino acids)=336AA_BP=1
MTRDSSEQGRTGDTLGRPSACMDALKPPCLWRNHERGKKDRDSCGRKNSEPGSPHSLEALRDAAPSQGLNFLLLFTKMLFIFNFLFSPLP
TPALICILTFGAAIFLWLITRPQPVLPLLDLNNQSVGIEGGARKGVSQKNNDLTSCCFSDAKTMYEVFQRGLAVSDNGPCLGYRKPNQPY
RWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQ

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:114224416/chr10:114154676)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ACSL5

Q9ULC5

VTI1A

Q96AJ9

FUNCTION: Catalyzes the conversion of long-chain fatty acids to their active form acyl-CoAs for both synthesis of cellular lipids, and degradation via beta-oxidation (PubMed:17681178, PubMed:24269233, PubMed:22633490). ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells. {ECO:0000250, ECO:0000269|PubMed:17681178, ECO:0000269|PubMed:18806831, ECO:0000269|PubMed:19459852, ECO:0000269|PubMed:22633490, ECO:0000269|PubMed:24269233}.FUNCTION: V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be involved in increased cytokine secretion associated with cellular senescence. {ECO:0000269|PubMed:18195106, ECO:0000269|PubMed:19138172}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneACSL5chr10:114164564chr10:114286845ENST00000354273+52112_32144.0684.0TransmembraneHelical%3B Signal-anchor for type III membrane protein
HgeneACSL5chr10:114164564chr10:114286845ENST00000354655+52112_32144.0684.0TransmembraneHelical%3B Signal-anchor for type III membrane protein
HgeneACSL5chr10:114164564chr10:114286845ENST00000356116+52112_32200.0740.0TransmembraneHelical%3B Signal-anchor for type III membrane protein
HgeneACSL5chr10:114164564chr10:114286845ENST00000393081+52112_32144.0684.0TransmembraneHelical%3B Signal-anchor for type III membrane protein
HgeneACSL5chr10:114164564chr10:114286845ENST00000433418+52012_32144.0660.0TransmembraneHelical%3B Signal-anchor for type III membrane protein
TgeneVTI1Achr10:114164564chr10:114286845ENST0000039307728112_17888.0218.0Coiled coilOntology_term=ECO:0000255
TgeneVTI1Achr10:114164564chr10:114286845ENST0000043230628112_17888.0204.0Coiled coilOntology_term=ECO:0000255
TgeneVTI1Achr10:114164564chr10:114286845ENST0000039307728214_21788.0218.0Topological domainExtracellular
TgeneVTI1Achr10:114164564chr10:114286845ENST0000043230628214_21788.0204.0Topological domainExtracellular
TgeneVTI1Achr10:114164564chr10:114286845ENST0000039307728193_21388.0218.0TransmembraneHelical
TgeneVTI1Achr10:114164564chr10:114286845ENST0000043230628193_21388.0204.0TransmembraneHelical

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneACSL5chr10:114164564chr10:114286845ENST00000354273+52133_683144.0684.0Topological domainCytoplasmic
HgeneACSL5chr10:114164564chr10:114286845ENST00000354655+52133_683144.0684.0Topological domainCytoplasmic
HgeneACSL5chr10:114164564chr10:114286845ENST00000356116+52133_683200.0740.0Topological domainCytoplasmic
HgeneACSL5chr10:114164564chr10:114286845ENST00000393081+52133_683144.0684.0Topological domainCytoplasmic
HgeneACSL5chr10:114164564chr10:114286845ENST00000433418+52033_683144.0660.0Topological domainCytoplasmic
TgeneVTI1Achr10:114164564chr10:114286845ENST000003930772831_9288.0218.0Coiled coilOntology_term=ECO:0000255
TgeneVTI1Achr10:114164564chr10:114286845ENST000004323062831_9288.0204.0Coiled coilOntology_term=ECO:0000255
TgeneVTI1Achr10:114164564chr10:114286845ENST00000393077281_19288.0218.0Topological domainCytoplasmic
TgeneVTI1Achr10:114164564chr10:114286845ENST00000432306281_19288.0204.0Topological domainCytoplasmic


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors
ACSL5CREB3, KIF11, FAM136A, COQ9, FBXO7, RNF4, RAB7A, SLC7A14, SLC35C2, AQP6, SLC10A1, PEX12, SLC16A7, TMEM14B, EPT1, FAM134C, SLC10A6, EBAG9, CAV2, ELK1, PAK1, PEBP1, PRKCB, PRKD1, SH2D3C, PDS5A, WDR5,
VTI1AVAMP4, VAMP3, STX7, STX8, VAMP8, env, TMBIM6, STX6, STX12, CLEC12A, Snap29, HAUS1, HNRNPL, RNF4, BET1, APEX1, NAPA, VAMP5, ORF7b, ARF6, B3GAT1, LAMP2, LAMP3, LAMTOR1, MARCKS, RAB2A, RAB4A, RAB5A, RAB5C, RAB9A, EDEM1, TRPC4AP, TMEM74, ZDHHC12, SEC22B, SMPD1, TMEM9, NAPG, TMEM9B, GPRC5B, B4GALT5, TMEM171, ASPH, SLC39A4, VPS45, SNAP29, HLA-C, STX11, STX18,


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
ACSL5all structure
VTI1Aall structure


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to ACSL5-VTI1A


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to ACSL5-VTI1A


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneACSL5C0003865Arthritis, Adjuvant-Induced1CTD_human
HgeneACSL5C0971858Arthritis, Collagen-Induced1CTD_human
HgeneACSL5C0993582Arthritis, Experimental1CTD_human
TgeneVTI1AC0001418Adenocarcinoma1CTD_human
TgeneVTI1AC0009402Colorectal Carcinoma1CTD_human
TgeneVTI1AC0009404Colorectal Neoplasms1CTD_human
TgeneVTI1AC0205641Adenocarcinoma, Basal Cell1CTD_human
TgeneVTI1AC0205642Adenocarcinoma, Oxyphilic1CTD_human
TgeneVTI1AC0205643Carcinoma, Cribriform1CTD_human
TgeneVTI1AC0205644Carcinoma, Granular Cell1CTD_human
TgeneVTI1AC0205645Adenocarcinoma, Tubular1CTD_human