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Fusion Protein:COL1A1-AEBP1 |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: COL1A1-AEBP1 | FusionPDB ID: 18105 | FusionGDB2.0 ID: 18105 | Hgene | Tgene | Gene symbol | COL1A1 | AEBP1 | Gene ID | 1277 | 165 |
Gene name | collagen type I alpha 1 chain | AE binding protein 1 | |
Synonyms | CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4 | ACLP | |
Cytomap | 17q21.33 | 7p13 | |
Type of gene | protein-coding | protein-coding | |
Description | collagen alpha-1(I) chainalpha-1 type I collagenalpha1(I) procollagencollagen alpha 1 chain type Icollagen alpha-1(I) chain preproproteincollagen of skin, tendon and bone, alpha-1 chaincollagen, type I, alpha 1pro-alpha-1 collagen type 1type I pro | adipocyte enhancer-binding protein 1aortic carboxypeptidase-like protein | |
Modification date | 20200322 | 20200315 | |
UniProtAcc | P02452 | Q8IUX7 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000225964, | ENST00000450684, ENST00000454218, ENST00000223357, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 56 X 95 X 16=85120 | 7 X 7 X 4=196 |
# samples | 86 | 7 | |
** MAII score | log2(86/85120*10)=-6.62901768079909 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/196*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: COL1A1 [Title/Abstract] AND AEBP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | COL1A1(48273845)-AEBP1(44151741), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | COL1A1-AEBP1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. COL1A1-AEBP1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. COL1A1-AEBP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. COL1A1-AEBP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | COL1A1 | GO:0010718 | positive regulation of epithelial to mesenchymal transition | 20018240 |
Hgene | COL1A1 | GO:0030335 | positive regulation of cell migration | 20018240 |
Hgene | COL1A1 | GO:0034504 | protein localization to nucleus | 20018240 |
Hgene | COL1A1 | GO:0045893 | positive regulation of transcription, DNA-templated | 20018240 |
Hgene | COL1A1 | GO:0090263 | positive regulation of canonical Wnt signaling pathway | 20018240 |
Tgene | AEBP1 | GO:1904026 | regulation of collagen fibril organization | 29606302 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-AR-A250-01A | COL1A1 | chr17 | 48273845 | - | AEBP1 | chr7 | 44151741 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000225964 | COL1A1 | chr17 | 48273845 | - | ENST00000223357 | AEBP1 | chr7 | 44151741 | + | 2761 | 1022 | 119 | 2461 | 780 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000225964 | ENST00000223357 | COL1A1 | chr17 | 48273845 | - | AEBP1 | chr7 | 44151741 | + | 0.003129607 | 0.99687046 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >18105_18105_1_COL1A1-AEBP1_COL1A1_chr17_48273845_ENST00000225964_AEBP1_chr7_44151741_ENST00000223357_length(amino acids)=780AA_BP=243 MFSFVDLRLLLLLAATALLTHGQEEGQVEGQDEDIPPITCVQNGLRYHDRDVWKPEPCRICVCDNGKVLCDDVICDETKNCPGAEVPEGE CCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGF SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGSEFGNWALGLWTEEGFDIFEDFPDLNSVLWGAEERKWVPYRVPNNNLPIPERYLSPDA TVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPTQEQLLAAAMAAARGEDEDEVSEAQETPDHAIFRWLAISFASAHLTLTE PYRGGCQAQDYTGGMGIVNGAKWNPRTGTINDFSYLHTNCLELSFYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGI PIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSAKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPS RPMTPQQRRLQQRRLQHRLRLRAQMRLRRLNATTTLGPHTVPPTLPPAPATTLSTTIEPWGLIPPTTAGWEESETETYTEVVTEFGTEVE -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:48273845/chr7:44151741) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
COL1A1 | AEBP1 |
FUNCTION: Type I collagen is a member of group I collagen (fibrillar forming collagen). | FUNCTION: [Isoform 1]: As a positive regulator of collagen fibrillogenesis, it is probably involved in the organization and remodeling of the extracellular matrix. {ECO:0000269|PubMed:29606302}.; FUNCTION: [Isoform 2]: May positively regulate MAP-kinase activity in adipocytes, leading to enhanced adipocyte proliferation and reduced adipocyte differentiation. May also positively regulate NF-kappa-B activity in macrophages by promoting the phosphorylation and subsequent degradation of I-kappa-B-alpha (NFKBIA), leading to enhanced macrophage inflammatory responsiveness. Can act as a transcriptional repressor. {ECO:0000250|UniProtKB:Q640N1}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | COL1A1 | chr17:48273845 | chr7:44151741 | ENST00000225964 | - | 13 | 51 | 38_96 | 301.0 | 1465.0 | Domain | VWFC |
Hgene | COL1A1 | chr17:48273845 | chr7:44151741 | ENST00000225964 | - | 13 | 51 | 162_178 | 301.0 | 1465.0 | Region | Note=Nonhelical region (N-terminal) |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000223357 | 15 | 21 | 1079_1136 | 679.0 | 1159.0 | Compositional bias | Note=Glu-rich | |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000450684 | 2 | 8 | 1079_1136 | 254.0 | 734.0 | Compositional bias | Note=Glu-rich | |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000450684 | 2 | 8 | 383_540 | 254.0 | 734.0 | Domain | F5/8 type C | |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000223357 | 15 | 21 | 941_1158 | 679.0 | 1159.0 | Region | Required for transcriptional repression | |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000450684 | 2 | 8 | 941_1158 | 254.0 | 734.0 | Region | Required for transcriptional repression |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | COL1A1 | chr17:48273845 | chr7:44151741 | ENST00000225964 | - | 13 | 51 | 1229_1464 | 301.0 | 1465.0 | Domain | Fibrillar collagen NC1 |
Hgene | COL1A1 | chr17:48273845 | chr7:44151741 | ENST00000225964 | - | 13 | 51 | 1093_1095 | 301.0 | 1465.0 | Motif | Cell attachment site |
Hgene | COL1A1 | chr17:48273845 | chr7:44151741 | ENST00000225964 | - | 13 | 51 | 745_747 | 301.0 | 1465.0 | Motif | Cell attachment site |
Hgene | COL1A1 | chr17:48273845 | chr7:44151741 | ENST00000225964 | - | 13 | 51 | 1193_1218 | 301.0 | 1465.0 | Region | Note=Nonhelical region (C-terminal) |
Hgene | COL1A1 | chr17:48273845 | chr7:44151741 | ENST00000225964 | - | 13 | 51 | 179_1192 | 301.0 | 1465.0 | Region | Note=Triple-helical region |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000223357 | 15 | 21 | 47_326 | 679.0 | 1159.0 | Compositional bias | Note=Pro-rich | |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000450684 | 2 | 8 | 47_326 | 254.0 | 734.0 | Compositional bias | Note=Pro-rich | |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000223357 | 15 | 21 | 383_540 | 679.0 | 1159.0 | Domain | F5/8 type C |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
COL1A1 | IGFBP3, TXN, ITGA2, ITGB1, NID1, Nid1, NID2, SPARC, PRELP, PKD1, VWF, THBS1, MMP2, COL7A1, MATN2, MAG, ELAVL1, ATP13A2, C12orf57, RNH1, BARD1, BRCA1, UBC, CAPN1, COL1A1, COL1A2, PDGFA, PDGFB, GIPC2, UBXN11, DNM3, CD200R1, TMTC4, ERAL1, CAMKMT, TMEM180, OTUB1, EGFR, COLGALT2, P4HA2, PLOD1, LIN9, TIMM44, RASGEF1B, TLE3, YAF2, LPAR1, CYLD, MCPH1, HEXIM1, PPP1CC, KEAP1, PINK1, CDC42, NMRAL1, PAX3, NTPCR, FOXO1, IGLC1, DDX58, YIPF1, LAIR2, LAT, KIAA1191, SLC25A40, CTNND1, FOXD3, CHMP3, ZNF645, CD247, RANBP6, TRIM41, TNFRSF10D, KIR3DS1, SMDT1, PPIA, PEG10, TMEM44, RNF144A, VCP, TESPA1, ABHD14A, TADA1, ST3GAL3, KLF15, BGN, TGM2, COL18A1, NLRP7, |
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Gene | STRING network |
COL1A1 | ![]() |
AEBP1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000223357 | 15 | 21 | 421_624 | 679.0 | 1159.0 | MAPK1 and MAPK3 | |
Tgene | AEBP1 | chr17:48273845 | chr7:44151741 | ENST00000223357 | 15 | 21 | 555_985 | 679.0 | 1159.0 | PTEN |
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Related Drugs to COL1A1-AEBP1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to COL1A1-AEBP1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | COL1A1 | C0268358 | Osteogenesis imperfecta, dominant perinatal lethal | 38 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0268362 | Osteogenesis imperfecta type III (disorder) | 17 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0023931 | Lobstein Disease | 15 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0268363 | Osteogenesis imperfecta type IV (disorder) | 12 | GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0023890 | Liver Cirrhosis | 4 | CTD_human |
Hgene | COL1A1 | C0239946 | Fibrosis, Liver | 4 | CTD_human |
Hgene | COL1A1 | C4551623 | EHLERS-DANLOS SYNDROME, ARTHROCHALASIA TYPE, 1 | 4 | CTD_human;GENOMICS_ENGLAND |
Hgene | COL1A1 | C4552122 | EHLERS-DANLOS SYNDROME, CLASSIC TYPE, 1 | 4 | GENOMICS_ENGLAND;UNIPROT |
Hgene | COL1A1 | C0020497 | Cortical Congenital Hyperostosis | 3 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | COL1A1 | C0023893 | Liver Cirrhosis, Experimental | 3 | CTD_human |
Hgene | COL1A1 | C0268345 | EHLERS-DANLOS SYNDROME, ARTHROCHALASIA TYPE | 2 | ORPHANET |
Hgene | COL1A1 | C0000786 | Spontaneous abortion | 1 | CTD_human |
Hgene | COL1A1 | C0000822 | Abortion, Tubal | 1 | CTD_human |
Hgene | COL1A1 | C0002949 | Aneurysm, Dissecting | 1 | CTD_human |
Hgene | COL1A1 | C0003504 | Aortic Valve Insufficiency | 1 | CTD_human |
Hgene | COL1A1 | C0004364 | Autoimmune Diseases | 1 | CTD_human |
Hgene | COL1A1 | C0005398 | Cholestasis, Extrahepatic | 1 | CTD_human |
Hgene | COL1A1 | C0005779 | Blood Coagulation Disorders | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C0006663 | Calcinosis | 1 | CTD_human |
Hgene | COL1A1 | C0008311 | Cholangitis | 1 | CTD_human |
Hgene | COL1A1 | C0013720 | Ehlers-Danlos Syndrome | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C0016059 | Fibrosis | 1 | CTD_human |
Hgene | COL1A1 | C0018824 | Heart valve disease | 1 | CTD_human |
Hgene | COL1A1 | C0020538 | Hypertensive disease | 1 | CTD_human |
Hgene | COL1A1 | C0022548 | Keloid | 1 | CTD_human |
Hgene | COL1A1 | C0027719 | Nephrosclerosis | 1 | CTD_human |
Hgene | COL1A1 | C0027726 | Nephrotic Syndrome | 1 | CTD_human |
Hgene | COL1A1 | C0029172 | Oral Submucous Fibrosis | 1 | CTD_human |
Hgene | COL1A1 | C0029434 | Osteogenesis Imperfecta | 1 | CTD_human;GENOMICS_ENGLAND |
Hgene | COL1A1 | C0149721 | Left Ventricular Hypertrophy | 1 | CTD_human |
Hgene | COL1A1 | C0220679 | Ehlers-Danlos Syndrome, Autosomal Dominant, Type Unspecified | 1 | ORPHANET |
Hgene | COL1A1 | C0263628 | Tumoral calcinosis | 1 | CTD_human |
Hgene | COL1A1 | C0340643 | Dissection of aorta | 1 | CTD_human |
Hgene | COL1A1 | C0521174 | Microcalcification | 1 | CTD_human |
Hgene | COL1A1 | C1458140 | Bleeding tendency | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C1619692 | Nephrogenic Fibrosing Dermopathy | 1 | CTD_human |
Hgene | COL1A1 | C1623038 | Cirrhosis | 1 | CTD_human |
Hgene | COL1A1 | C1846545 | Autoimmune Lymphoproliferative Syndrome Type 2B | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C3830362 | Early Pregnancy Loss | 1 | CTD_human |
Hgene | COL1A1 | C4277533 | Dissection, Blood Vessel | 1 | CTD_human |
Hgene | COL1A1 | C4552766 | Miscarriage | 1 | CTD_human |