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Fusion Protein:COL1A1-BGN |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: COL1A1-BGN | FusionPDB ID: 18108 | FusionGDB2.0 ID: 18108 | Hgene | Tgene | Gene symbol | COL1A1 | BGN | Gene ID | 1277 | 633 |
Gene name | collagen type I alpha 1 chain | biglycan | |
Synonyms | CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4 | DSPG1|MRLS|PG-S1|PGI|SEMDX|SLRR1A | |
Cytomap | 17q21.33 | Xq28 | |
Type of gene | protein-coding | protein-coding | |
Description | collagen alpha-1(I) chainalpha-1 type I collagenalpha1(I) procollagencollagen alpha 1 chain type Icollagen alpha-1(I) chain preproproteincollagen of skin, tendon and bone, alpha-1 chaincollagen, type I, alpha 1pro-alpha-1 collagen type 1type I pro | biglycanbone/cartilage proteoglycan-Idermatan sulphate proteoglycan Ismall leucine-rich protein 1A | |
Modification date | 20200322 | 20200320 | |
UniProtAcc | P02452 | P21810 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000225964, | ENST00000480756, ENST00000331595, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 56 X 95 X 16=85120 | 9 X 9 X 3=243 |
# samples | 86 | 9 | |
** MAII score | log2(86/85120*10)=-6.62901768079909 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/243*10)=-1.43295940727611 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: COL1A1 [Title/Abstract] AND BGN [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | COL1A1(48269149)-BGN(152771321), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | COL1A1-BGN seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. COL1A1-BGN seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. COL1A1-BGN seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. COL1A1-BGN seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | COL1A1 | GO:0010718 | positive regulation of epithelial to mesenchymal transition | 20018240 |
Hgene | COL1A1 | GO:0030335 | positive regulation of cell migration | 20018240 |
Hgene | COL1A1 | GO:0034504 | protein localization to nucleus | 20018240 |
Hgene | COL1A1 | GO:0045893 | positive regulation of transcription, DNA-templated | 20018240 |
Hgene | COL1A1 | GO:0090263 | positive regulation of canonical Wnt signaling pathway | 20018240 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUSC | TCGA-60-2703-01A | COL1A1 | chr17 | 48269149 | - | BGN | chrX | 152771321 | + |
ChimerDB4 | LUSC | TCGA-60-2703 | COL1A1 | chr17 | 48269149 | - | BGN | chrX | 152771321 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000225964 | COL1A1 | chr17 | 48269149 | - | ENST00000331595 | BGN | chrX | 152771321 | + | 4111 | 2246 | 119 | 3001 | 960 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000225964 | ENST00000331595 | COL1A1 | chr17 | 48269149 | - | BGN | chrX | 152771321 | + | 0.000692159 | 0.9993079 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >18108_18108_1_COL1A1-BGN_COL1A1_chr17_48269149_ENST00000225964_BGN_chrX_152771321_ENST00000331595_length(amino acids)=960AA_BP=117 MFSFVDLRLLLLLAATALLTHGQEEGQVEGQDEDIPPITCVQNGLRYHDRDVWKPEPCRICVCDNGKVLCDDVICDETKNCPGAEVPEGE CCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGF SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGP RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE PGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGE RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKALVLVNNKISK IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLARVPSGLPDLKLLQVVYLH -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:48269149/chrX:152771321) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
COL1A1 | BGN |
FUNCTION: Type I collagen is a member of group I collagen (fibrillar forming collagen). | FUNCTION: May be involved in collagen fiber assembly. {ECO:0000250}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | COL1A1 | chr17:48269149 | chrX:152771321 | ENST00000225964 | - | 31 | 51 | 38_96 | 709.0 | 1465.0 | Domain | VWFC |
Hgene | COL1A1 | chr17:48269149 | chrX:152771321 | ENST00000225964 | - | 31 | 51 | 162_178 | 709.0 | 1465.0 | Region | Note=Nonhelical region (N-terminal) |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 127_150 | 117.0 | 369.0 | Repeat | Note=LRR 3 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 151_171 | 117.0 | 369.0 | Repeat | Note=LRR 4 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 172_195 | 117.0 | 369.0 | Repeat | Note=LRR 5 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 196_220 | 117.0 | 369.0 | Repeat | Note=LRR 6 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 221_241 | 117.0 | 369.0 | Repeat | Note=LRR 7 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 242_265 | 117.0 | 369.0 | Repeat | Note=LRR 8 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 266_289 | 117.0 | 369.0 | Repeat | Note=LRR 9 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 290_312 | 117.0 | 369.0 | Repeat | Note=LRR 10 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 313_342 | 117.0 | 369.0 | Repeat | Note=LRR 11 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 343_368 | 117.0 | 369.0 | Repeat | Note=LRR 12 |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | COL1A1 | chr17:48269149 | chrX:152771321 | ENST00000225964 | - | 31 | 51 | 1229_1464 | 709.0 | 1465.0 | Domain | Fibrillar collagen NC1 |
Hgene | COL1A1 | chr17:48269149 | chrX:152771321 | ENST00000225964 | - | 31 | 51 | 1093_1095 | 709.0 | 1465.0 | Motif | Cell attachment site |
Hgene | COL1A1 | chr17:48269149 | chrX:152771321 | ENST00000225964 | - | 31 | 51 | 745_747 | 709.0 | 1465.0 | Motif | Cell attachment site |
Hgene | COL1A1 | chr17:48269149 | chrX:152771321 | ENST00000225964 | - | 31 | 51 | 1193_1218 | 709.0 | 1465.0 | Region | Note=Nonhelical region (C-terminal) |
Hgene | COL1A1 | chr17:48269149 | chrX:152771321 | ENST00000225964 | - | 31 | 51 | 179_1192 | 709.0 | 1465.0 | Region | Note=Triple-helical region |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 63_76 | 117.0 | 369.0 | Compositional bias | Note=Cys-rich | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 103_126 | 117.0 | 369.0 | Repeat | Note=LRR 2 | |
Tgene | BGN | chr17:48269149 | chrX:152771321 | ENST00000331595 | 2 | 8 | 82_102 | 117.0 | 369.0 | Repeat | Note=LRR 1 |
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Fusion Protein Structures |
![]() * Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
Fusion protein PDB link (fusion AA seq ID in FusionPDB) | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | AA seq | Len(AA seq) |
PDB file >>>1761_COL1A1_48269149_BGN_152771321_ranked_0.pdb | COL1A1 | 48269149 | 48269149 | ENST00000331595 | BGN | chrX | 152771321 | + | MFSFVDLRLLLLLAATALLTHGQEEGQVEGQDEDIPPITCVQNGLRYHDRDVWKPEPCRICVCDNGKVLCDDVICDETKNCPGAEVPEGE CCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGF SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGP RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE PGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGE RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKALVLVNNKISK IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLARVPSGLPDLKLLQVVYLH | 960 |
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pLDDT score distribution |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
COL1A1_pLDDT.png![]() |
BGN_pLDDT.png![]() |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
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Ramachandran Plot of Fusion Protein Structure |
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Fusion AA seq ID in FusionPDB and their Ramachandran plots |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
COL1A1 | IGFBP3, TXN, ITGA2, ITGB1, NID1, Nid1, NID2, SPARC, PRELP, PKD1, VWF, THBS1, MMP2, COL7A1, MATN2, MAG, ELAVL1, ATP13A2, C12orf57, RNH1, BARD1, BRCA1, UBC, CAPN1, COL1A1, COL1A2, PDGFA, PDGFB, GIPC2, UBXN11, DNM3, CD200R1, TMTC4, ERAL1, CAMKMT, TMEM180, OTUB1, EGFR, COLGALT2, P4HA2, PLOD1, LIN9, TIMM44, RASGEF1B, TLE3, YAF2, LPAR1, CYLD, MCPH1, HEXIM1, PPP1CC, KEAP1, PINK1, CDC42, NMRAL1, PAX3, NTPCR, FOXO1, IGLC1, DDX58, YIPF1, LAIR2, LAT, KIAA1191, SLC25A40, CTNND1, FOXD3, CHMP3, ZNF645, CD247, RANBP6, TRIM41, TNFRSF10D, KIR3DS1, SMDT1, PPIA, PEG10, TMEM44, RNF144A, VCP, TESPA1, ABHD14A, TADA1, ST3GAL3, KLF15, BGN, TGM2, COL18A1, NLRP7, |
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Gene | STRING network |
COL1A1 | ![]() |
BGN |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to COL1A1-BGN |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to COL1A1-BGN |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | COL1A1 | C0268358 | Osteogenesis imperfecta, dominant perinatal lethal | 38 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0268362 | Osteogenesis imperfecta type III (disorder) | 17 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0023931 | Lobstein Disease | 15 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0268363 | Osteogenesis imperfecta type IV (disorder) | 12 | GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | COL1A1 | C0023890 | Liver Cirrhosis | 4 | CTD_human |
Hgene | COL1A1 | C0239946 | Fibrosis, Liver | 4 | CTD_human |
Hgene | COL1A1 | C4551623 | EHLERS-DANLOS SYNDROME, ARTHROCHALASIA TYPE, 1 | 4 | CTD_human;GENOMICS_ENGLAND |
Hgene | COL1A1 | C4552122 | EHLERS-DANLOS SYNDROME, CLASSIC TYPE, 1 | 4 | GENOMICS_ENGLAND;UNIPROT |
Hgene | COL1A1 | C0020497 | Cortical Congenital Hyperostosis | 3 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | COL1A1 | C0023893 | Liver Cirrhosis, Experimental | 3 | CTD_human |
Hgene | COL1A1 | C0268345 | EHLERS-DANLOS SYNDROME, ARTHROCHALASIA TYPE | 2 | ORPHANET |
Hgene | COL1A1 | C0000786 | Spontaneous abortion | 1 | CTD_human |
Hgene | COL1A1 | C0000822 | Abortion, Tubal | 1 | CTD_human |
Hgene | COL1A1 | C0002949 | Aneurysm, Dissecting | 1 | CTD_human |
Hgene | COL1A1 | C0003504 | Aortic Valve Insufficiency | 1 | CTD_human |
Hgene | COL1A1 | C0004364 | Autoimmune Diseases | 1 | CTD_human |
Hgene | COL1A1 | C0005398 | Cholestasis, Extrahepatic | 1 | CTD_human |
Hgene | COL1A1 | C0005779 | Blood Coagulation Disorders | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C0006663 | Calcinosis | 1 | CTD_human |
Hgene | COL1A1 | C0008311 | Cholangitis | 1 | CTD_human |
Hgene | COL1A1 | C0013720 | Ehlers-Danlos Syndrome | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C0016059 | Fibrosis | 1 | CTD_human |
Hgene | COL1A1 | C0018824 | Heart valve disease | 1 | CTD_human |
Hgene | COL1A1 | C0020538 | Hypertensive disease | 1 | CTD_human |
Hgene | COL1A1 | C0022548 | Keloid | 1 | CTD_human |
Hgene | COL1A1 | C0027719 | Nephrosclerosis | 1 | CTD_human |
Hgene | COL1A1 | C0027726 | Nephrotic Syndrome | 1 | CTD_human |
Hgene | COL1A1 | C0029172 | Oral Submucous Fibrosis | 1 | CTD_human |
Hgene | COL1A1 | C0029434 | Osteogenesis Imperfecta | 1 | CTD_human;GENOMICS_ENGLAND |
Hgene | COL1A1 | C0149721 | Left Ventricular Hypertrophy | 1 | CTD_human |
Hgene | COL1A1 | C0220679 | Ehlers-Danlos Syndrome, Autosomal Dominant, Type Unspecified | 1 | ORPHANET |
Hgene | COL1A1 | C0263628 | Tumoral calcinosis | 1 | CTD_human |
Hgene | COL1A1 | C0340643 | Dissection of aorta | 1 | CTD_human |
Hgene | COL1A1 | C0521174 | Microcalcification | 1 | CTD_human |
Hgene | COL1A1 | C1458140 | Bleeding tendency | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C1619692 | Nephrogenic Fibrosing Dermopathy | 1 | CTD_human |
Hgene | COL1A1 | C1623038 | Cirrhosis | 1 | CTD_human |
Hgene | COL1A1 | C1846545 | Autoimmune Lymphoproliferative Syndrome Type 2B | 1 | GENOMICS_ENGLAND |
Hgene | COL1A1 | C3830362 | Early Pregnancy Loss | 1 | CTD_human |
Hgene | COL1A1 | C4277533 | Dissection, Blood Vessel | 1 | CTD_human |
Hgene | COL1A1 | C4552766 | Miscarriage | 1 | CTD_human |