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Fusion Protein:ABCA5-C17orf67 |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: ABCA5-C17orf67 | FusionPDB ID: 194 | FusionGDB2.0 ID: 194 | Hgene | Tgene | Gene symbol | ABCA5 | C17orf67 | Gene ID | 23461 | 339210 |
Gene name | ATP binding cassette subfamily A member 5 | chromosome 17 open reading frame 67 | |
Synonyms | ABC13|EST90625|HTC3 | - | |
Cytomap | 17q24.3 | 17q22 | |
Type of gene | protein-coding | protein-coding | |
Description | ATP-binding cassette sub-family A member 5ATP-binding cassette A5ATP-binding cassette, sub-family A (ABC1), member 5 | uncharacterized protein C17orf67 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q8WWZ7 | Q0P5P2 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000392676, ENST00000392677, ENST00000588877, ENST00000589609, | ENST00000487705, ENST00000397862, ENST00000397861, ENST00000575658, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 7 X 8 X 6=336 | 4 X 6 X 3=72 |
# samples | 9 | 5 | |
** MAII score | log2(9/336*10)=-1.90046432644909 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/72*10)=-0.526068811667588 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: ABCA5 [Title/Abstract] AND C17orf67 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | ABCA5(67280094)-C17orf67(54872541), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | ABCA5-C17orf67 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ABCA5-C17orf67 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ABCA5-C17orf67 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. ABCA5-C17orf67 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. ABCA5-C17orf67 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. ABCA5-C17orf67 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUSC | TCGA-6A-AB49-01A | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - |
ChimerDB4 | LUSC | TCGA-6A-AB49 | ABCA5 | chr17 | 67280093 | - | C17orf67 | chr17 | 54872541 | - |
ChimerDB4 | LUSC | TCGA-6A-AB49 | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000392676 | ABCA5 | chr17 | 67280094 | - | ENST00000397861 | C17orf67 | chr17 | 54872541 | - | 3034 | 2457 | 65 | 2497 | 810 |
ENST00000392676 | ABCA5 | chr17 | 67280094 | - | ENST00000575658 | C17orf67 | chr17 | 54872541 | - | 3033 | 2457 | 65 | 2497 | 810 |
ENST00000392677 | ABCA5 | chr17 | 67280094 | - | ENST00000397861 | C17orf67 | chr17 | 54872541 | - | 3115 | 2538 | 146 | 2578 | 810 |
ENST00000392677 | ABCA5 | chr17 | 67280094 | - | ENST00000575658 | C17orf67 | chr17 | 54872541 | - | 3114 | 2538 | 146 | 2578 | 810 |
ENST00000588877 | ABCA5 | chr17 | 67280094 | - | ENST00000397861 | C17orf67 | chr17 | 54872541 | - | 3979 | 3402 | 1010 | 3442 | 810 |
ENST00000588877 | ABCA5 | chr17 | 67280094 | - | ENST00000575658 | C17orf67 | chr17 | 54872541 | - | 3978 | 3402 | 1010 | 3442 | 810 |
ENST00000392676 | ABCA5 | chr17 | 67280093 | - | ENST00000397861 | C17orf67 | chr17 | 54872541 | - | 3034 | 2457 | 65 | 2497 | 810 |
ENST00000392676 | ABCA5 | chr17 | 67280093 | - | ENST00000575658 | C17orf67 | chr17 | 54872541 | - | 3033 | 2457 | 65 | 2497 | 810 |
ENST00000392677 | ABCA5 | chr17 | 67280093 | - | ENST00000397861 | C17orf67 | chr17 | 54872541 | - | 3115 | 2538 | 146 | 2578 | 810 |
ENST00000392677 | ABCA5 | chr17 | 67280093 | - | ENST00000575658 | C17orf67 | chr17 | 54872541 | - | 3114 | 2538 | 146 | 2578 | 810 |
ENST00000588877 | ABCA5 | chr17 | 67280093 | - | ENST00000397861 | C17orf67 | chr17 | 54872541 | - | 3979 | 3402 | 1010 | 3442 | 810 |
ENST00000588877 | ABCA5 | chr17 | 67280093 | - | ENST00000575658 | C17orf67 | chr17 | 54872541 | - | 3978 | 3402 | 1010 | 3442 | 810 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000392676 | ENST00000397861 | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - | 0.000833847 | 0.99916613 |
ENST00000392676 | ENST00000575658 | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - | 0.000847148 | 0.9991529 |
ENST00000392677 | ENST00000397861 | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - | 0.000831491 | 0.9991685 |
ENST00000392677 | ENST00000575658 | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - | 0.000844299 | 0.99915576 |
ENST00000588877 | ENST00000397861 | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - | 0.000657941 | 0.999342 |
ENST00000588877 | ENST00000575658 | ABCA5 | chr17 | 67280094 | - | C17orf67 | chr17 | 54872541 | - | 0.000661784 | 0.9993382 |
ENST00000392676 | ENST00000397861 | ABCA5 | chr17 | 67280093 | - | C17orf67 | chr17 | 54872541 | - | 0.000833847 | 0.99916613 |
ENST00000392676 | ENST00000575658 | ABCA5 | chr17 | 67280093 | - | C17orf67 | chr17 | 54872541 | - | 0.000847148 | 0.9991529 |
ENST00000392677 | ENST00000397861 | ABCA5 | chr17 | 67280093 | - | C17orf67 | chr17 | 54872541 | - | 0.000831491 | 0.9991685 |
ENST00000392677 | ENST00000575658 | ABCA5 | chr17 | 67280093 | - | C17orf67 | chr17 | 54872541 | - | 0.000844299 | 0.99915576 |
ENST00000588877 | ENST00000397861 | ABCA5 | chr17 | 67280093 | - | C17orf67 | chr17 | 54872541 | - | 0.000657941 | 0.999342 |
ENST00000588877 | ENST00000575658 | ABCA5 | chr17 | 67280093 | - | C17orf67 | chr17 | 54872541 | - | 0.000661784 | 0.9993382 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >194_194_1_ABCA5-C17orf67_ABCA5_chr17_67280093_ENST00000392676_C17orf67_chr17_54872541_ENST00000397861_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_2_ABCA5-C17orf67_ABCA5_chr17_67280093_ENST00000392676_C17orf67_chr17_54872541_ENST00000575658_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_3_ABCA5-C17orf67_ABCA5_chr17_67280093_ENST00000392677_C17orf67_chr17_54872541_ENST00000397861_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_4_ABCA5-C17orf67_ABCA5_chr17_67280093_ENST00000392677_C17orf67_chr17_54872541_ENST00000575658_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_5_ABCA5-C17orf67_ABCA5_chr17_67280093_ENST00000588877_C17orf67_chr17_54872541_ENST00000397861_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_6_ABCA5-C17orf67_ABCA5_chr17_67280093_ENST00000588877_C17orf67_chr17_54872541_ENST00000575658_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_7_ABCA5-C17orf67_ABCA5_chr17_67280094_ENST00000392676_C17orf67_chr17_54872541_ENST00000397861_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_8_ABCA5-C17orf67_ABCA5_chr17_67280094_ENST00000392676_C17orf67_chr17_54872541_ENST00000575658_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_9_ABCA5-C17orf67_ABCA5_chr17_67280094_ENST00000392677_C17orf67_chr17_54872541_ENST00000397861_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_10_ABCA5-C17orf67_ABCA5_chr17_67280094_ENST00000392677_C17orf67_chr17_54872541_ENST00000575658_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_11_ABCA5-C17orf67_ABCA5_chr17_67280094_ENST00000588877_C17orf67_chr17_54872541_ENST00000397861_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- >194_194_12_ABCA5-C17orf67_ABCA5_chr17_67280094_ENST00000588877_C17orf67_chr17_54872541_ENST00000575658_length(amino acids)=810AA_BP= MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:67280094/chr17:54872541) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
ABCA5 | C17orf67 |
FUNCTION: Cholesterol efflux transporter in macrophages that is responsible for APOAI/high-density lipoproteins (HDL) formation at the plasma membrane under high cholesterol levels and participates in reverse cholesterol transport (PubMed:25125465). May play a role in the processing of autolysosomes (By similarity). {ECO:0000250|UniProtKB:Q8K448, ECO:0000269|PubMed:25125465}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 478_713 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 1 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 478_713 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 1 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 478_713 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 1 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 478_713 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 1 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 514_521 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 1 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 514_521 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 1 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 514_521 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 1 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 514_521 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 1 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 220_240 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 264_284 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 297_317 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 328_348 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 32_52 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 355_375 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 396_416 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 220_240 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 264_284 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 297_317 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 328_348 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 32_52 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 355_375 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 396_416 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 220_240 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 264_284 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 297_317 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 328_348 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 32_52 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 355_375 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 396_416 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 220_240 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 264_284 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 297_317 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 328_348 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 32_52 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 355_375 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 396_416 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1290_1533 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 2 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1290_1533 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 2 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1290_1533 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 2 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1290_1533 | 797.3333333333334 | 1643.0 | Domain | ABC transporter 2 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1333_1340 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 2 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1333_1340 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 2 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1333_1340 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 2 |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1333_1340 | 797.3333333333334 | 1643.0 | Nucleotide binding | ATP 2 |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1021_1041 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1071_1091 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1102_1122 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1139_1159 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1169_1189 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1207_1227 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 866_886 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 967_987 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1021_1041 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1071_1091 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1102_1122 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1139_1159 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1169_1189 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1207_1227 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 866_886 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280093 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 967_987 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1021_1041 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1071_1091 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1102_1122 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1139_1159 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1169_1189 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 1207_1227 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 866_886 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000392676 | - | 18 | 39 | 967_987 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1021_1041 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1071_1091 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1102_1122 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1139_1159 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1169_1189 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 1207_1227 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 866_886 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
Hgene | ABCA5 | chr17:67280094 | chr17:54872541 | ENST00000588877 | - | 17 | 38 | 967_987 | 797.3333333333334 | 1643.0 | Transmembrane | Helical |
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Fusion Protein Structures |
![]() * Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
Fusion protein PDB link (fusion AA seq ID in FusionPDB) | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | AA seq | Len(AA seq) |
PDB file >>>1587_ABCA5_67280094_C17orf67_54872541_ranked_0.pdb | ABCA5 | 67280093 | 67280094 | ENST00000575658 | C17orf67 | chr17 | 54872541 | - | MSTAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSS IMQKVSTDHLPDVIITEEYTNEKEMLTSSLSKPSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHIVAEKEKKIKEFLKIMGLHDTAFWLSWVLLY TSLIFLMSLLMAVIATASLLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLMIILIESFPKSLVWLFS PFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFYVLLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYEEL SEGNVNGNISFSEIIEPVSSEFVGKEAIRISGIQKTYRKKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI YGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKLSGGQKRKLSLGIAVL GNPKILLLDEPTAGMDPCSRHIVWNLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWGIGYRLSMYIDKYCAT ESLSSLVKQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDSHSNLGVISYGVSMTTLEDVFLKLEVEAEIDQAGIHAPPARPGASR | 810 |
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pLDDT score distribution |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
ABCA5_pLDDT.png![]() |
C17orf67_pLDDT.png![]() |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
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Ramachandran Plot of Fusion Protein Structure |
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Fusion AA seq ID in FusionPDB and their Ramachandran plots |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
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Gene | STRING network |
ABCA5 | |
C17orf67 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to ABCA5-C17orf67 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to ABCA5-C17orf67 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |