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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:DNMT1-ELAVL3

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: DNMT1-ELAVL3
FusionPDB ID: 23693
FusionGDB2.0 ID: 23693
HgeneTgene
Gene symbol

DNMT1

ELAVL3

Gene ID

1786

1995

Gene nameDNA methyltransferase 1ELAV like RNA binding protein 3
SynonymsADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaIHUC|HUCL|PLE21
Cytomap

19p13.2

19p13.2

Type of geneprotein-codingprotein-coding
DescriptionDNA (cytosine-5)-methyltransferase 1CXXC-type zinc finger protein 9DNA (cytosine-5-)-methyltransferase 1DNA MTase HsaIDNA methyltransferase HsaIELAV-like protein 3ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)ELAV like neuron-specific RNA binding protein 3Hu antigen Chu-antigen Cparaneoplastic cerebellar degeneration-associated antigenparaneoplastic limbic enceph
Modification date2020031320200313
UniProtAcc

P26358

Q14576

Ensembl transtripts involved in fusion geneENST idsENST00000340748, ENST00000359526, 
ENST00000540357, ENST00000589538, 
ENST00000592218, ENST00000359227, 
ENST00000438662, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score14 X 12 X 11=18486 X 6 X 5=180
# samples 178
** MAII scorelog2(17/1848*10)=-3.44235810527836
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(8/180*10)=-1.16992500144231
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: DNMT1 [Title/Abstract] AND ELAVL3 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)DNMT1(10264968)-ELAVL3(11569426), # samples:1
DNMT1(10264969)-ELAVL3(11569426), # samples:1
Anticipated loss of major functional domain due to fusion event.DNMT1-ELAVL3 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
DNMT1-ELAVL3 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
DNMT1-ELAVL3 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
DNMT1-ELAVL3 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneDNMT1

GO:0010216

maintenance of DNA methylation

18754681|21745816


check buttonFusion gene breakpoints across DNMT1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across ELAVL3 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4COADTCGA-AA-A00Z-01ADNMT1chr19

10264969

-ELAVL3chr19

11569426

-
ChimerDB4COADTCGA-AA-A00ZDNMT1chr19

10264968

-ELAVL3chr19

11569426

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000340748DNMT1chr1910264968-ENST00000359227ELAVL3chr1911569426-61782207442977977
ENST00000340748DNMT1chr1910264968-ENST00000438662ELAVL3chr1911569426-30802207442956970
ENST00000540357DNMT1chr1910264968-ENST00000359227ELAVL3chr1911569426-612221511802921913
ENST00000540357DNMT1chr1910264968-ENST00000438662ELAVL3chr1911569426-302421511802900906
ENST00000359526DNMT1chr1910264968-ENST00000359227ELAVL3chr1911569426-617021991802969929
ENST00000359526DNMT1chr1910264968-ENST00000438662ELAVL3chr1911569426-307221991802948922
ENST00000340748DNMT1chr1910264969-ENST00000359227ELAVL3chr1911569426-61782207442977977
ENST00000340748DNMT1chr1910264969-ENST00000438662ELAVL3chr1911569426-30802207442956970
ENST00000540357DNMT1chr1910264969-ENST00000359227ELAVL3chr1911569426-612221511802921913
ENST00000540357DNMT1chr1910264969-ENST00000438662ELAVL3chr1911569426-302421511802900906
ENST00000359526DNMT1chr1910264969-ENST00000359227ELAVL3chr1911569426-617021991802969929
ENST00000359526DNMT1chr1910264969-ENST00000438662ELAVL3chr1911569426-307221991802948922

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000340748ENST00000359227DNMT1chr1910264968-ELAVL3chr1911569426-0.0007909860.999209
ENST00000340748ENST00000438662DNMT1chr1910264968-ELAVL3chr1911569426-0.0031046920.9968953
ENST00000540357ENST00000359227DNMT1chr1910264968-ELAVL3chr1911569426-0.0010819940.99891806
ENST00000540357ENST00000438662DNMT1chr1910264968-ELAVL3chr1911569426-0.0042870310.995713
ENST00000359526ENST00000359227DNMT1chr1910264968-ELAVL3chr1911569426-0.0007392660.9992607
ENST00000359526ENST00000438662DNMT1chr1910264968-ELAVL3chr1911569426-0.0036097770.99639016
ENST00000340748ENST00000359227DNMT1chr1910264969-ELAVL3chr1911569426-0.0007909860.999209
ENST00000340748ENST00000438662DNMT1chr1910264969-ELAVL3chr1911569426-0.0031046920.9968953
ENST00000540357ENST00000359227DNMT1chr1910264969-ELAVL3chr1911569426-0.0010819940.99891806
ENST00000540357ENST00000438662DNMT1chr1910264969-ELAVL3chr1911569426-0.0042870310.995713
ENST00000359526ENST00000359227DNMT1chr1910264969-ELAVL3chr1911569426-0.0007392660.9992607
ENST00000359526ENST00000438662DNMT1chr1910264969-ELAVL3chr1911569426-0.0036097770.99639016

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>23693_23693_1_DNMT1-ELAVL3_DNMT1_chr19_10264968_ENST00000340748_ELAVL3_chr19_11569426_ENST00000359227_length(amino acids)=977AA_BP=721
MGMAGSVPSFCTGYRLSPFGTSPPPPRPDWGGRRRLRSSPLPIGFRAKSRGACAAAAASAEASEMPARTAPARVPTLAVPAISLPDDVRR
RLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSE
ARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRR
VTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAK
RRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKL
SIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKAL
IGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDE
AGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVC
EVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV
KFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYN

--------------------------------------------------------------

>23693_23693_2_DNMT1-ELAVL3_DNMT1_chr19_10264968_ENST00000340748_ELAVL3_chr19_11569426_ENST00000438662_length(amino acids)=970AA_BP=721
MGMAGSVPSFCTGYRLSPFGTSPPPPRPDWGGRRRLRSSPLPIGFRAKSRGACAAAAASAEASEMPARTAPARVPTLAVPAISLPDDVRR
RLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSE
ARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRR
VTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAK
RRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKL
SIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKAL
IGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDE
AGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVC
EVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV
KFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADE

--------------------------------------------------------------

>23693_23693_3_DNMT1-ELAVL3_DNMT1_chr19_10264968_ENST00000359526_ELAVL3_chr19_11569426_ENST00000359227_length(amino acids)=929AA_BP=673
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKRSRDPPASASQVTGIRAEPSPSPRITRKSTRQ
TTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTP
KQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVM
NSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELF
FSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTY
EDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRG
PTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV
DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYG
VKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA

--------------------------------------------------------------

>23693_23693_4_DNMT1-ELAVL3_DNMT1_chr19_10264968_ENST00000359526_ELAVL3_chr19_11569426_ENST00000438662_length(amino acids)=922AA_BP=673
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKRSRDPPASASQVTGIRAEPSPSPRITRKSTRQ
TTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTP
KQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVM
NSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELF
FSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTY
EDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRG
PTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV
DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYG
VKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL

--------------------------------------------------------------

>23693_23693_5_DNMT1-ELAVL3_DNMT1_chr19_10264968_ENST00000540357_ELAVL3_chr19_11569426_ENST00000359227_length(amino acids)=913AA_BP=657
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKP
QEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGV
QADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYL
DDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLE
GGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGL
NLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDT
FFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAI
DGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV

--------------------------------------------------------------

>23693_23693_6_DNMT1-ELAVL3_DNMT1_chr19_10264968_ENST00000540357_ELAVL3_chr19_11569426_ENST00000438662_length(amino acids)=906AA_BP=657
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKP
QEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGV
QADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYL
DDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLE
GGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGL
NLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDT
FFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLA
GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT

--------------------------------------------------------------

>23693_23693_7_DNMT1-ELAVL3_DNMT1_chr19_10264969_ENST00000340748_ELAVL3_chr19_11569426_ENST00000359227_length(amino acids)=977AA_BP=721
MGMAGSVPSFCTGYRLSPFGTSPPPPRPDWGGRRRLRSSPLPIGFRAKSRGACAAAAASAEASEMPARTAPARVPTLAVPAISLPDDVRR
RLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSE
ARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRR
VTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAK
RRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKL
SIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKAL
IGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDE
AGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVC
EVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV
KFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYN

--------------------------------------------------------------

>23693_23693_8_DNMT1-ELAVL3_DNMT1_chr19_10264969_ENST00000340748_ELAVL3_chr19_11569426_ENST00000438662_length(amino acids)=970AA_BP=721
MGMAGSVPSFCTGYRLSPFGTSPPPPRPDWGGRRRLRSSPLPIGFRAKSRGACAAAAASAEASEMPARTAPARVPTLAVPAISLPDDVRR
RLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSE
ARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRR
VTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAK
RRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKL
SIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKAL
IGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDE
AGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVC
EVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV
KFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADE

--------------------------------------------------------------

>23693_23693_9_DNMT1-ELAVL3_DNMT1_chr19_10264969_ENST00000359526_ELAVL3_chr19_11569426_ENST00000359227_length(amino acids)=929AA_BP=673
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKRSRDPPASASQVTGIRAEPSPSPRITRKSTRQ
TTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTP
KQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVM
NSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELF
FSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTY
EDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRG
PTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV
DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYG
VKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA

--------------------------------------------------------------

>23693_23693_10_DNMT1-ELAVL3_DNMT1_chr19_10264969_ENST00000359526_ELAVL3_chr19_11569426_ENST00000438662_length(amino acids)=922AA_BP=673
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKRSRDPPASASQVTGIRAEPSPSPRITRKSTRQ
TTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTP
KQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVM
NSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELF
FSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTY
EDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRG
PTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV
DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYG
VKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL

--------------------------------------------------------------

>23693_23693_11_DNMT1-ELAVL3_DNMT1_chr19_10264969_ENST00000540357_ELAVL3_chr19_11569426_ENST00000359227_length(amino acids)=913AA_BP=657
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKP
QEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGV
QADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYL
DDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLE
GGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGL
NLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDT
FFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAI
DGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV

--------------------------------------------------------------

>23693_23693_12_DNMT1-ELAVL3_DNMT1_chr19_10264969_ENST00000540357_ELAVL3_chr19_11569426_ENST00000438662_length(amino acids)=906AA_BP=657
MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDL
SLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKP
QEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGV
QADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYL
DDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLE
GGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGL
NLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDT
FFAEQIEKDDREDKENAFKRRRCGVCEVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLA
GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:10264968/chr19:11569426)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
DNMT1

P26358

ELAVL3

Q14576

FUNCTION: Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9. Probably forms a corepressor complex required for activated KRAS-mediated promoter hypermethylation and transcriptional silencing of tumor suppressor genes (TSGs) or other tumor-related genes in colorectal cancer (CRC) cells (PubMed:24623306). Also required to maintain a transcriptionally repressive state of genes in undifferentiated embryonic stem cells (ESCs) (PubMed:24623306). Associates at promoter regions of tumor suppressor genes (TSGs) leading to their gene silencing (PubMed:24623306). Promotes tumor growth (PubMed:24623306). {ECO:0000269|PubMed:16357870, ECO:0000269|PubMed:18413740, ECO:0000269|PubMed:18754681, ECO:0000269|PubMed:24623306}.FUNCTION: RNA-binding protein that binds to AU-rich element (ARE) sequences of target mRNAs, including VEGF mRNA (PubMed:10710437). May also bind poly-A tracts via RRM 3 (By similarity). May be involved in neuronal differentiation and maintenance (By similarity). Plays a role in the stabilization of GAP43 mRNA and in spatial learning (By similarity). {ECO:0000250|UniProtKB:Q60900, ECO:0000269|PubMed:10710437}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-214016_109657.01617.0DomainDMAP1-binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-224116_109673.01633.0DomainDMAP1-binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-214016_109657.01617.0DomainDMAP1-binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-224116_109673.01633.0DomainDMAP1-binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140177_205657.01617.0MotifNuclear localization signal
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241177_205673.01633.0MotifNuclear localization signal
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140177_205657.01617.0MotifNuclear localization signal
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241177_205673.01633.0MotifNuclear localization signal
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140310_502657.01617.0RegionNote=Homodimerization
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140331_550657.01617.0RegionDNA replication foci-targeting sequence
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241310_502673.01633.0RegionNote=Homodimerization
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241331_550673.01633.0RegionDNA replication foci-targeting sequence
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140310_502657.01617.0RegionNote=Homodimerization
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140331_550657.01617.0RegionDNA replication foci-targeting sequence
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241310_502673.01633.0RegionNote=Homodimerization
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241331_550673.01633.0RegionDNA replication foci-targeting sequence
TgeneELAVL3chr19:10264968chr19:11569426ENST0000035922727125_205111.0368.0DomainRRM 2
TgeneELAVL3chr19:10264968chr19:11569426ENST0000035922727284_362111.0368.0DomainRRM 3
TgeneELAVL3chr19:10264968chr19:11569426ENST0000043866227125_205111.0361.0DomainRRM 2
TgeneELAVL3chr19:10264968chr19:11569426ENST0000043866227284_362111.0361.0DomainRRM 3
TgeneELAVL3chr19:10264969chr19:11569426ENST0000035922727125_205111.0368.0DomainRRM 2
TgeneELAVL3chr19:10264969chr19:11569426ENST0000035922727284_362111.0368.0DomainRRM 3
TgeneELAVL3chr19:10264969chr19:11569426ENST0000043866227125_205111.0361.0DomainRRM 2
TgeneELAVL3chr19:10264969chr19:11569426ENST0000043866227284_362111.0361.0DomainRRM 3

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401139_1599657.01617.0DomainSAM-dependent MTase C5-type
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140755_880657.01617.0DomainBAH 1
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140972_1100657.01617.0DomainBAH 2
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411139_1599673.01633.0DomainSAM-dependent MTase C5-type
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241755_880673.01633.0DomainBAH 1
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241972_1100673.01633.0DomainBAH 2
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401139_1599657.01617.0DomainSAM-dependent MTase C5-type
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140755_880657.01617.0DomainBAH 1
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140972_1100657.01617.0DomainBAH 2
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411139_1599673.01633.0DomainSAM-dependent MTase C5-type
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241755_880673.01633.0DomainBAH 1
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241972_1100673.01633.0DomainBAH 2
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401109_1120657.01617.0RegionNote=6 X 2 AA tandem repeats of K-G
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401139_1616657.01617.0RegionNote=Catalytic
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401150_1151657.01617.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401168_1169657.01617.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401190_1191657.01617.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140651_697657.01617.0RegionNote=Required for activity
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140693_754657.01617.0RegionNote=Autoinhibitory linker
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411109_1120673.01633.0RegionNote=6 X 2 AA tandem repeats of K-G
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411139_1616673.01633.0RegionNote=Catalytic
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411150_1151673.01633.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411168_1169673.01633.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411190_1191673.01633.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241651_697673.01633.0RegionNote=Required for activity
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241693_754673.01633.0RegionNote=Autoinhibitory linker
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401109_1120657.01617.0RegionNote=6 X 2 AA tandem repeats of K-G
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401139_1616657.01617.0RegionNote=Catalytic
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401150_1151657.01617.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401168_1169657.01617.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401190_1191657.01617.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140651_697657.01617.0RegionNote=Required for activity
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140693_754657.01617.0RegionNote=Autoinhibitory linker
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411109_1120673.01633.0RegionNote=6 X 2 AA tandem repeats of K-G
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411139_1616673.01633.0RegionNote=Catalytic
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411150_1151673.01633.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411168_1169673.01633.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411190_1191673.01633.0RegionS-adenosyl-L-methionine binding
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241651_697673.01633.0RegionNote=Required for activity
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241693_754673.01633.0RegionNote=Autoinhibitory linker
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401109_1110657.01617.0RepeatNote=1
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401111_1112657.01617.0RepeatNote=2
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401113_1114657.01617.0RepeatNote=3
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401115_1116657.01617.0RepeatNote=4
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401117_1118657.01617.0RepeatNote=5
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401119_1120657.01617.0RepeatNote=6%3B approximate
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411109_1110673.01633.0RepeatNote=1
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411111_1112673.01633.0RepeatNote=2
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411113_1114673.01633.0RepeatNote=3
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411115_1116673.01633.0RepeatNote=4
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411117_1118673.01633.0RepeatNote=5
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411119_1120673.01633.0RepeatNote=6%3B approximate
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401109_1110657.01617.0RepeatNote=1
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401111_1112657.01617.0RepeatNote=2
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401113_1114657.01617.0RepeatNote=3
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401115_1116657.01617.0RepeatNote=4
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401117_1118657.01617.0RepeatNote=5
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401119_1120657.01617.0RepeatNote=6%3B approximate
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411109_1110673.01633.0RepeatNote=1
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411111_1112673.01633.0RepeatNote=2
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411113_1114673.01633.0RepeatNote=3
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411115_1116673.01633.0RepeatNote=4
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411117_1118673.01633.0RepeatNote=5
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411119_1120673.01633.0RepeatNote=6%3B approximate
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-2140646_692657.01617.0Zinc fingerCXXC-type
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-2241646_692673.01633.0Zinc fingerCXXC-type
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-2140646_692657.01617.0Zinc fingerCXXC-type
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-2241646_692673.01633.0Zinc fingerCXXC-type
TgeneELAVL3chr19:10264968chr19:11569426ENST000003592272739_117111.0368.0DomainRRM 1
TgeneELAVL3chr19:10264968chr19:11569426ENST000004386622739_117111.0361.0DomainRRM 1
TgeneELAVL3chr19:10264969chr19:11569426ENST000003592272739_117111.0368.0DomainRRM 1
TgeneELAVL3chr19:10264969chr19:11569426ENST000004386622739_117111.0361.0DomainRRM 1


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
DNMT1
ELAVL3


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneDNMT1chr19:10264968chr19:11569426ENST00000340748-21401121_1616657.01617.0the PRC2/EED-EZH2 complex
HgeneDNMT1chr19:10264968chr19:11569426ENST00000359526-22411121_1616673.01633.0the PRC2/EED-EZH2 complex
HgeneDNMT1chr19:10264969chr19:11569426ENST00000340748-21401121_1616657.01617.0the PRC2/EED-EZH2 complex
HgeneDNMT1chr19:10264969chr19:11569426ENST00000359526-22411121_1616673.01633.0the PRC2/EED-EZH2 complex


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Related Drugs to DNMT1-ELAVL3


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to DNMT1-ELAVL3


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource