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Fusion Protein:AGFG1-MFF |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: AGFG1-MFF | FusionPDB ID: 2868 | FusionGDB2.0 ID: 2868 | Hgene | Tgene | Gene symbol | AGFG1 | MFF | Gene ID | 3267 | 56947 |
Gene name | ArfGAP with FG repeats 1 | mitochondrial fission factor | |
Synonyms | HRB|RAB|RIP | C2orf33|EMPF2|GL004 | |
Cytomap | 2q36.3 | 2q36.3 | |
Type of gene | protein-coding | protein-coding | |
Description | arf-GAP domain and FG repeat-containing protein 1HIV-1 Rev-binding proteinRab, Rev/Rex activation domain-binding proteinarf-GAP domain and FG repeats-containing protein 1hRIP, Rev interacting proteinnucleoporin-like protein RIPrev-interacting protei | mitochondrial fission factor | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | P52594 | Q9GZY8 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000310078, ENST00000373671, ENST00000409171, ENST00000409315, ENST00000409979, ENST00000486932, | ENST00000337110, ENST00000349901, ENST00000353339, ENST00000354503, ENST00000392059, ENST00000409565, ENST00000409616, ENST00000476924, ENST00000524634, ENST00000304593, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 13 X 9 X 8=936 | 6 X 9 X 4=216 |
# samples | 15 | 9 | |
** MAII score | log2(15/936*10)=-2.64154602908752 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/216*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: AGFG1 [Title/Abstract] AND MFF [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | AGFG1(228389631)-MFF(228220393), # samples:2 AGFG1(228337304)-MFF(228220393), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | AGFG1-MFF seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. AGFG1-MFF seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. AGFG1-MFF seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. AGFG1-MFF seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. AGFG1-MFF seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. AGFG1-MFF seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | MFF | GO:0090141 | positive regulation of mitochondrial fission | 23283981|23530241 |
Tgene | MFF | GO:0090314 | positive regulation of protein targeting to membrane | 23283981 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-62-A471-01A | AGFG1 | chr2 | 228389631 | - | MFF | chr2 | 228220393 | + |
ChimerDB4 | LUAD | TCGA-62-A471-01A | AGFG1 | chr2 | 228389631 | + | MFF | chr2 | 228220393 | + |
ChimerDB4 | LUAD | TCGA-62-A471-01A | AGFG1 | chr2 | 228395926 | + | MFF | chr2 | 228211942 | + |
ChimerDB4 | LUAD | TCGA-62-A471-01A | AGFG1 | chr2 | 228395926 | + | MFF | chr2 | 228220393 | + |
ChimerDB4 | LUAD | TCGA-62-A471 | AGFG1 | chr2 | 228389631 | + | MFF | chr2 | 228220392 | + |
ChimerDB4 | LUAD | TCGA-62-A471 | AGFG1 | chr2 | 228395926 | + | MFF | chr2 | 228220392 | + |
ChimerDB4 | LUSC | TCGA-43-8116-01A | AGFG1 | chr2 | 228337304 | - | MFF | chr2 | 228220393 | + |
ChimerDB4 | LUSC | TCGA-43-8116 | AGFG1 | chr2 | 228337304 | + | MFF | chr2 | 228220393 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000409979 | AGFG1 | chr2 | 228337304 | + | ENST00000304593 | MFF | chr2 | 228220393 | + | 1371 | 437 | 45 | 653 | 202 |
ENST00000310078 | AGFG1 | chr2 | 228337304 | + | ENST00000304593 | MFF | chr2 | 228220393 | + | 1361 | 427 | 35 | 643 | 202 |
ENST00000409315 | AGFG1 | chr2 | 228337304 | + | ENST00000304593 | MFF | chr2 | 228220393 | + | 1154 | 220 | 23 | 436 | 137 |
ENST00000373671 | AGFG1 | chr2 | 228337304 | + | ENST00000304593 | MFF | chr2 | 228220393 | + | 1151 | 217 | 20 | 433 | 137 |
ENST00000409171 | AGFG1 | chr2 | 228337304 | + | ENST00000304593 | MFF | chr2 | 228220393 | + | 1151 | 217 | 20 | 433 | 137 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000409979 | ENST00000304593 | AGFG1 | chr2 | 228337304 | + | MFF | chr2 | 228220393 | + | 0.012920693 | 0.9870794 |
ENST00000310078 | ENST00000304593 | AGFG1 | chr2 | 228337304 | + | MFF | chr2 | 228220393 | + | 0.012742688 | 0.9872573 |
ENST00000409315 | ENST00000304593 | AGFG1 | chr2 | 228337304 | + | MFF | chr2 | 228220393 | + | 0.011849565 | 0.9881505 |
ENST00000373671 | ENST00000304593 | AGFG1 | chr2 | 228337304 | + | MFF | chr2 | 228220393 | + | 0.013457623 | 0.98654234 |
ENST00000409171 | ENST00000304593 | AGFG1 | chr2 | 228337304 | + | MFF | chr2 | 228220393 | + | 0.013457623 | 0.98654234 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >2868_2868_1_AGFG1-MFF_AGFG1_chr2_228337304_ENST00000310078_MFF_chr2_228220393_ENST00000304593_length(amino acids)=202AA_BP=131 MSRLCRLVWPVSPRTTAPGPRRAQYSQAAAAGSGAGGARRRRAAAAARAARGTAGPRRSAARLPALPASSLGAAAMAASAKRKQEEKHLK MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLYGISNIDTTIEGTSDDLTVVDAASLRRQIIKLNRRLQLLEEENKERAKR -------------------------------------------------------------- >2868_2868_2_AGFG1-MFF_AGFG1_chr2_228337304_ENST00000373671_MFF_chr2_228220393_ENST00000304593_length(amino acids)=137AA_BP=66 MPASSLGAAAMAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLYGISNIDTTIEGTSDDLTVVDAAS -------------------------------------------------------------- >2868_2868_3_AGFG1-MFF_AGFG1_chr2_228337304_ENST00000409171_MFF_chr2_228220393_ENST00000304593_length(amino acids)=137AA_BP=66 MPASSLGAAAMAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLYGISNIDTTIEGTSDDLTVVDAAS -------------------------------------------------------------- >2868_2868_4_AGFG1-MFF_AGFG1_chr2_228337304_ENST00000409315_MFF_chr2_228220393_ENST00000304593_length(amino acids)=137AA_BP=66 MPASSLGAAAMAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLYGISNIDTTIEGTSDDLTVVDAAS -------------------------------------------------------------- >2868_2868_5_AGFG1-MFF_AGFG1_chr2_228337304_ENST00000409979_MFF_chr2_228220393_ENST00000304593_length(amino acids)=202AA_BP=131 MSRLCRLVWPVSPRTTAPGPRRAQYSQAAAAGSGAGGARRRRAAAAARAARGTAGPRRSAARLPALPASSLGAAAMAASAKRKQEEKHLK MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLYGISNIDTTIEGTSDDLTVVDAASLRRQIIKLNRRLQLLEEENKERAKR -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:228389631/chr2:228220393) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
AGFG1 | MFF |
FUNCTION: Required for vesicle docking or fusion during acrosome biogenesis (By similarity). May play a role in RNA trafficking or localization. In case of infection by HIV-1, acts as a cofactor for viral Rev and promotes movement of Rev-responsive element-containing RNAs from the nuclear periphery to the cytoplasm. This step is essential for HIV-1 replication. {ECO:0000250, ECO:0000269|PubMed:10613896, ECO:0000269|PubMed:14701878, ECO:0000269|PubMed:15749819}. | FUNCTION: Plays a role in mitochondrial and peroxisomal fission. Promotes the recruitment and association of the fission mediator dynamin-related protein 1 (DNM1L) to the mitochondrial surface. May be involved in regulation of synaptic vesicle membrane dynamics by recruitment of DNM1L to clathrin-containing vesicles. {ECO:0000269|PubMed:18353969, ECO:0000269|PubMed:23530241}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | AGFG1 | chr2:228337304 | chr2:228220393 | ENST00000310078 | + | 1 | 13 | 29_52 | 55.666666666666664 | 563.0 | Zinc finger | C4-type |
Hgene | AGFG1 | chr2:228337304 | chr2:228220393 | ENST00000373671 | + | 1 | 12 | 29_52 | 55.666666666666664 | 523.0 | Zinc finger | C4-type |
Hgene | AGFG1 | chr2:228337304 | chr2:228220393 | ENST00000409171 | + | 1 | 13 | 29_52 | 55.666666666666664 | 561.0 | Zinc finger | C4-type |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000304593 | 6 | 9 | 291_322 | 219.66666666666666 | 292.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000337110 | 5 | 8 | 291_322 | 171.66666666666666 | 244.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000349901 | 5 | 8 | 291_322 | 166.66666666666666 | 239.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000353339 | 8 | 11 | 291_322 | 270.6666666666667 | 343.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000354503 | 4 | 7 | 291_322 | 146.66666666666666 | 219.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000392059 | 8 | 11 | 291_322 | 270.6666666666667 | 343.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409565 | 3 | 6 | 291_322 | 146.66666666666666 | 219.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409616 | 6 | 9 | 291_322 | 166.66666666666666 | 239.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000304593 | 6 | 9 | 341_342 | 219.66666666666666 | 292.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000337110 | 5 | 8 | 341_342 | 171.66666666666666 | 244.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000349901 | 5 | 8 | 341_342 | 166.66666666666666 | 239.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000353339 | 8 | 11 | 341_342 | 270.6666666666667 | 343.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000354503 | 4 | 7 | 341_342 | 146.66666666666666 | 219.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000392059 | 8 | 11 | 341_342 | 270.6666666666667 | 343.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409565 | 3 | 6 | 341_342 | 146.66666666666666 | 219.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409616 | 6 | 9 | 341_342 | 166.66666666666666 | 239.0 | Topological domain | Mitochondrial intermembrane | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000304593 | 6 | 9 | 323_340 | 219.66666666666666 | 292.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000337110 | 5 | 8 | 323_340 | 171.66666666666666 | 244.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000349901 | 5 | 8 | 323_340 | 166.66666666666666 | 239.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000353339 | 8 | 11 | 323_340 | 270.6666666666667 | 343.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000354503 | 4 | 7 | 323_340 | 146.66666666666666 | 219.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000392059 | 8 | 11 | 323_340 | 270.6666666666667 | 343.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409565 | 3 | 6 | 323_340 | 146.66666666666666 | 219.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409616 | 6 | 9 | 323_340 | 166.66666666666666 | 239.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | AGFG1 | chr2:228337304 | chr2:228220393 | ENST00000310078 | + | 1 | 13 | 11_135 | 55.666666666666664 | 563.0 | Domain | Arf-GAP |
Hgene | AGFG1 | chr2:228337304 | chr2:228220393 | ENST00000373671 | + | 1 | 12 | 11_135 | 55.666666666666664 | 523.0 | Domain | Arf-GAP |
Hgene | AGFG1 | chr2:228337304 | chr2:228220393 | ENST00000409171 | + | 1 | 13 | 11_135 | 55.666666666666664 | 561.0 | Domain | Arf-GAP |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000304593 | 6 | 9 | 1_322 | 219.66666666666666 | 292.0 | Topological domain | Cytoplasmic | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000337110 | 5 | 8 | 1_322 | 171.66666666666666 | 244.0 | Topological domain | Cytoplasmic | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000349901 | 5 | 8 | 1_322 | 166.66666666666666 | 239.0 | Topological domain | Cytoplasmic | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000353339 | 8 | 11 | 1_322 | 270.6666666666667 | 343.0 | Topological domain | Cytoplasmic | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000354503 | 4 | 7 | 1_322 | 146.66666666666666 | 219.0 | Topological domain | Cytoplasmic | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000392059 | 8 | 11 | 1_322 | 270.6666666666667 | 343.0 | Topological domain | Cytoplasmic | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409565 | 3 | 6 | 1_322 | 146.66666666666666 | 219.0 | Topological domain | Cytoplasmic | |
Tgene | MFF | chr2:228337304 | chr2:228220393 | ENST00000409616 | 6 | 9 | 1_322 | 166.66666666666666 | 239.0 | Topological domain | Cytoplasmic |
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Fusion Protein Structures |
![]() * Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
Fusion protein PDB link (fusion AA seq ID in FusionPDB) | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | AA seq | Len(AA seq) |
PDB file >>>273_AGFG1_228337304_MFF_228220393_ranked_0.pdb | AGFG1 | 228337304 | 228337304 | ENST00000304593 | MFF | chr2 | 228220393 | + | MSRLCRLVWPVSPRTTAPGPRRAQYSQAAAAGSGAGGARRRRAAAAARAARGTAGPRRSAARLPALPASSLGAAAMAASAKRKQEEKHLK MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLYGISNIDTTIEGTSDDLTVVDAASLRRQIIKLNRRLQLLEEENKERAKR | 202 |
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pLDDT score distribution |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
AGFG1_pLDDT.png![]() |
MFF_pLDDT.png![]() |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
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Ramachandran Plot of Fusion Protein Structure |
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Fusion AA seq ID in FusionPDB and their Ramachandran plots |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
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Gene | STRING network |
AGFG1 | |
MFF |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to AGFG1-MFF |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to AGFG1-MFF |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |