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	Fusion Gene Summary
	Fusion Gene Sample Information
	Fusion ORF Analysis
	Fusion Amino Acid Sequences
	Fusion Protein Functional Features
	Fusion Protein-Protein Interaction
	Related drugs with this fusion protein
	Related disease with this fusion protein

Fusion Protein:GSK3B-FSTL1

Fusion Protein Summary

Fusion gene summary

Fusion partner gene information	Fusion gene name: GSK3B-FSTL1
	FusionPDB ID: 35042
	FusionGDB2.0 ID: 35042
		Hgene	Tgene
	Gene symbol	GSK3B	FSTL1
	Gene ID	2932	11167
	Gene name	glycogen synthase kinase 3 beta	follistatin like 1
	Synonyms	-	FRP\|FSL1\|MIR198\|OCC-1\|OCC1\|tsc36
	Cytomap	3q13.33	3q13.33
	Type of gene	protein-coding	protein-coding
	Description	glycogen synthase kinase-3 betaGSK-3 betaGSK3beta isoformserine/threonine-protein kinase GSK3B	follistatin-related protein 1follistatin-like protein 1
	Modification date	20200315	20200313
	UniProtAcc	C14orf129	Q12841
Ensembl transtripts involved in fusion gene	ENST ids	ENST00000264235, ENST00000316626, ENST00000473886,	ENST00000485968, ENST00000424703, ENST00000295633,
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)	* DoF score	31 X 22 X 12=8184	9 X 7 X 6=378
	# samples	36	10
	** MAII score	log2(36/8184*10)=-4.50673733341565 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(10/378*10)=-1.91838623444635 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)	PubMed: GSK3B [Title/Abstract] AND FSTL1 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)	GSK3B(119720893)-FSTL1(120134874), # samples:3
Anticipated loss of major functional domain due to fusion event.	GSK3B-FSTL1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. GSK3B-FSTL1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. GSK3B-FSTL1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. GSK3B-FSTL1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	GSK3B	GO:0005977	glycogen metabolic process	8638126
Hgene	GSK3B	GO:0006468	protein phosphorylation	11035810\|16315267\|20937854
Hgene	GSK3B	GO:0006983	ER overload response	14744935
Hgene	GSK3B	GO:0018105	peptidyl-serine phosphorylation	8638126\|11104755\|11955436\|14744935\|17139249
Hgene	GSK3B	GO:0018107	peptidyl-threonine phosphorylation	11955436\|17139249\|25897075
Hgene	GSK3B	GO:0031175	neuron projection development	19830702
Hgene	GSK3B	GO:0031334	positive regulation of protein complex assembly	8638126
Hgene	GSK3B	GO:0032091	negative regulation of protein binding	16890161
Hgene	GSK3B	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	19364825
Hgene	GSK3B	GO:0035556	intracellular signal transduction	14749367
Hgene	GSK3B	GO:0043066	negative regulation of apoptotic process	14744935
Hgene	GSK3B	GO:0046777	protein autophosphorylation	23184662
Hgene	GSK3B	GO:0046827	positive regulation of protein export from nucleus	14744935
Hgene	GSK3B	GO:1901215	negative regulation of neuron death	19830702
Hgene	GSK3B	GO:1901216	positive regulation of neuron death	18508033
Hgene	GSK3B	GO:2000300	regulation of synaptic vesicle exocytosis	17989287

Fusion gene breakpoints across GSK3B (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across FSTL1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Fusion Gene Sample Information

Fusion gene information from FusionGDB2.0.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChimerDB4	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
ChimerDB4	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120169593	-
ChimerDB4	BRCA	TCGA-E2-A14P	GSK3B	chr3	119720892	-	FSTL1	chr3	120134874	-

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Fusion ORF Analysis

Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	Seq length (transcript)	BP loci (transcript)	Predicted start (transcript)	Predicted stop (transcript)	Seq length (amino acids)
ENST00000264235	GSK3B	chr3	119720893	-	ENST00000295633	FSTL1	chr3	120134874	-	6788	1265	983	2128	381
ENST00000316626	GSK3B	chr3	119720893	-	ENST00000295633	FSTL1	chr3	120134874	-	6037	514	232	1377	381
ENST00000264235	GSK3B	chr3	119720892	-	ENST00000295633	FSTL1	chr3	120134874	-	6788	1265	983	2128	381
ENST00000316626	GSK3B	chr3	119720892	-	ENST00000295633	FSTL1	chr3	120134874	-	6037	514	232	1377	381
ENST00000264235	GSK3B	chr3	119720893	-	ENST00000295633	FSTL1	chr3	120169593	-	6851	1265	983	2191	402
ENST00000264235	GSK3B	chr3	119720893	-	ENST00000424703	FSTL1	chr3	120169593	-	2566	1265	983	2086	367
ENST00000316626	GSK3B	chr3	119720893	-	ENST00000295633	FSTL1	chr3	120169593	-	6100	514	232	1440	402
ENST00000316626	GSK3B	chr3	119720893	-	ENST00000424703	FSTL1	chr3	120169593	-	1815	514	232	1335	367

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	No-coding score	Coding score
ENST00000264235	ENST00000295633	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-	0.00064494	0.999355
ENST00000316626	ENST00000295633	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-	0.00050979	0.99949014
ENST00000264235	ENST00000295633	GSK3B	chr3	119720892	-	FSTL1	chr3	120134874	-	0.00064494	0.999355
ENST00000316626	ENST00000295633	GSK3B	chr3	119720892	-	FSTL1	chr3	120134874	-	0.00050979	0.99949014
ENST00000264235	ENST00000295633	GSK3B	chr3	119720893	-	FSTL1	chr3	120169593	-	0.000587295	0.9994128
ENST00000264235	ENST00000424703	GSK3B	chr3	119720893	-	FSTL1	chr3	120169593	-	0.003846129	0.9961539
ENST00000316626	ENST00000295633	GSK3B	chr3	119720893	-	FSTL1	chr3	120169593	-	0.000453938	0.999546
ENST00000316626	ENST00000424703	GSK3B	chr3	119720893	-	FSTL1	chr3	120169593	-	0.002854473	0.9971455

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Fusion Amino Acid Sequences

For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.

>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>35042_35042_1_GSK3B-FSTL1_GSK3B_chr3_119720892_ENST00000264235_FSTL1_chr3_120134874_ENST00000295633_length(amino acids)=381AA_BP=87
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKEELRSKSKICANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPS
ASPVVCYQSNRDELRRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYPDQENNKLLRGLC
VDALIELSDENADWKLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMTCDGKNQKGAQTQTEEEMTRYV

--------------------------------------------------------------

>35042_35042_2_GSK3B-FSTL1_GSK3B_chr3_119720892_ENST00000316626_FSTL1_chr3_120134874_ENST00000295633_length(amino acids)=381AA_BP=87
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKEELRSKSKICANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPS
ASPVVCYQSNRDELRRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYPDQENNKLLRGLC
VDALIELSDENADWKLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMTCDGKNQKGAQTQTEEEMTRYV

--------------------------------------------------------------

>35042_35042_3_GSK3B-FSTL1_GSK3B_chr3_119720893_ENST00000264235_FSTL1_chr3_120134874_ENST00000295633_length(amino acids)=381AA_BP=87
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKEELRSKSKICANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPS
ASPVVCYQSNRDELRRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYPDQENNKLLRGLC
VDALIELSDENADWKLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMTCDGKNQKGAQTQTEEEMTRYV

--------------------------------------------------------------

>35042_35042_4_GSK3B-FSTL1_GSK3B_chr3_119720893_ENST00000264235_FSTL1_chr3_120169593_ENST00000295633_length(amino acids)=402AA_BP=94
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKMWKRWLALALALVAVAWVRAEEELRSKSKICANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLT
GSKIQVDYDGHCKEKKSVSPSASPVVCYQSNRDELRRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNE
TAINITTYPDQENNKLLRGLCVDALIELSDENADWKLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMT

--------------------------------------------------------------

>35042_35042_5_GSK3B-FSTL1_GSK3B_chr3_119720893_ENST00000264235_FSTL1_chr3_120169593_ENST00000424703_length(amino acids)=367AA_BP=94
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKMWKRWLALALALVAVAWVRAEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPSASPVVCYQSNRDEL
RRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYPDQENNKLLRGLCVDALIELSDENADW
KLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMTCDGKNQKGAQTQTEEEMTRYVQELQKHQETAEKTK

--------------------------------------------------------------

>35042_35042_6_GSK3B-FSTL1_GSK3B_chr3_119720893_ENST00000316626_FSTL1_chr3_120134874_ENST00000295633_length(amino acids)=381AA_BP=87
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKEELRSKSKICANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPS
ASPVVCYQSNRDELRRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYPDQENNKLLRGLC
VDALIELSDENADWKLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMTCDGKNQKGAQTQTEEEMTRYV

--------------------------------------------------------------

>35042_35042_7_GSK3B-FSTL1_GSK3B_chr3_119720893_ENST00000316626_FSTL1_chr3_120169593_ENST00000295633_length(amino acids)=402AA_BP=94
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKMWKRWLALALALVAVAWVRAEEELRSKSKICANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLT
GSKIQVDYDGHCKEKKSVSPSASPVVCYQSNRDELRRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNE
TAINITTYPDQENNKLLRGLCVDALIELSDENADWKLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMT

--------------------------------------------------------------

>35042_35042_8_GSK3B-FSTL1_GSK3B_chr3_119720893_ENST00000316626_FSTL1_chr3_120169593_ENST00000424703_length(amino acids)=367AA_BP=94
MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD
KRFKMWKRWLALALALVAVAWVRAEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPSASPVVCYQSNRDEL
RRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYPDQENNKLLRGLCVDALIELSDENADW
KLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMTCDGKNQKGAQTQTEEEMTRYVQELQKHQETAEKTK

--------------------------------------------------------------

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Fusion Protein Functional Features

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:119720893/chr3:120134874)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
GSK3B C14orf129	FSTL1 Q12841
139	FUNCTION: Promotes endothelial cell survival, migration and differentiation into network structures in an AKT-dependent manner. Also promotes survival of cardiac myocytes. {ECO:0000250\|UniProtKB:Q62356}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page
* Minus value of BPloci means that the break pointn is located before the CDS.

- Retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

GSK3B

chr3:119720892

chr3:120134874

ENST00000264235

62_70

94.0

421.0

Nucleotide binding

ATP

Hgene

GSK3B

chr3:119720892

chr3:120134874

ENST00000316626

62_70

94.0

434.0

Nucleotide binding

ATP

Hgene

GSK3B

chr3:119720893

chr3:120134874

ENST00000264235

62_70

94.0

421.0

Nucleotide binding

ATP

Hgene

GSK3B

chr3:119720893

chr3:120134874

ENST00000316626

62_70

94.0

434.0

Nucleotide binding

ATP

Hgene

GSK3B

chr3:119720893

chr3:120169593

ENST00000264235

62_70

94.0

421.0

Nucleotide binding

ATP

Hgene

GSK3B

chr3:119720893

chr3:120169593

ENST00000316626

62_70

94.0

434.0

Nucleotide binding

ATP

Tgene

FSTL1

chr3:119720892

chr3:120134874

ENST00000295633

144_178

21.0

309.0

Domain

EF-hand 1

Tgene

FSTL1

chr3:119720892

chr3:120134874

ENST00000295633

193_228

21.0

309.0

Domain

EF-hand 2

Tgene

FSTL1

chr3:119720892

chr3:120134874

ENST00000295633

233_287

21.0

309.0

Domain

Note=VWFC

Tgene

FSTL1

chr3:119720892

chr3:120134874

ENST00000295633

30_53

21.0

309.0

Domain

Note=Follistatin-like

Tgene

FSTL1

chr3:119720892

chr3:120134874

ENST00000295633

48_100

21.0

309.0

Domain

Kazal-like

Tgene

FSTL1

chr3:119720893

chr3:120134874

ENST00000295633

144_178

21.0

309.0

Domain

EF-hand 1

Tgene

FSTL1

chr3:119720893

chr3:120134874

ENST00000295633

193_228

21.0

309.0

Domain

EF-hand 2

Tgene

FSTL1

chr3:119720893

chr3:120134874

ENST00000295633

233_287

21.0

309.0

Domain

Note=VWFC

Tgene

FSTL1

chr3:119720893

chr3:120134874

ENST00000295633

30_53

21.0

309.0

Domain

Note=Follistatin-like

Tgene

FSTL1

chr3:119720893

chr3:120134874

ENST00000295633

48_100

21.0

309.0

Domain

Kazal-like

Tgene

FSTL1

chr3:119720893

chr3:120169593

ENST00000295633

144_178

0.0

309.0

Domain

EF-hand 1

Tgene

FSTL1

chr3:119720893

chr3:120169593

ENST00000295633

193_228

0.0

309.0

Domain

EF-hand 2

Tgene

FSTL1

chr3:119720893

chr3:120169593

ENST00000295633

233_287

0.0

309.0

Domain

Note=VWFC

Tgene

FSTL1

chr3:119720893

chr3:120169593

ENST00000295633

30_53

0.0

309.0

Domain

Note=Follistatin-like

Tgene

FSTL1

chr3:119720893

chr3:120169593

ENST00000295633

48_100

0.0

309.0

Domain

Kazal-like

- Not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

GSK3B

chr3:119720892

chr3:120134874

ENST00000264235

56_340

94.0

421.0

Domain

Protein kinase

Hgene

GSK3B

chr3:119720892

chr3:120134874

ENST00000316626

56_340

94.0

434.0

Domain

Protein kinase

Hgene

GSK3B

chr3:119720893

chr3:120134874

ENST00000264235

56_340

94.0

421.0

Domain

Protein kinase

Hgene

GSK3B

chr3:119720893

chr3:120134874

ENST00000316626

56_340

94.0

434.0

Domain

Protein kinase

Hgene

GSK3B

chr3:119720893

chr3:120169593

ENST00000264235

56_340

94.0

421.0

Domain

Protein kinase

Hgene

GSK3B

chr3:119720893

chr3:120169593

ENST00000316626

56_340

94.0

434.0

Domain

Protein kinase

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Fusion Protein-Protein Interaction

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)

Gene

PPI interactors

Protein-protein interactors based on sequence similarity (STRING)

Gene	STRING network
GSK3B
FSTL1

- Retained interactions in fusion protein (protein functional feature from UniProt).

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost interactions due to fusion (protein functional feature from UniProt).

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

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Related Drugs to GSK3B-FSTL1

Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Drug

Source

PMID

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Related Diseases to GSK3B-FSTL1

Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Disease

Source

PMID

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source