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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:IGFBP7-SPATA22

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: IGFBP7-SPATA22
FusionPDB ID: 38621
FusionGDB2.0 ID: 38621
HgeneTgene
Gene symbol

IGFBP7

SPATA22

Gene ID

3490

84690

Gene nameinsulin like growth factor binding protein 7spermatogenesis associated 22
SynonymsAGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAFNYD-SP20|NYDSP20
Cytomap

4q12

17p13.2

Type of geneprotein-codingprotein-coding
Descriptioninsulin-like growth factor-binding protein 7IGF-binding protein 7IGFBP-rP1PGI2-stimulating factorangiomodulinprostacyclin-stimulating factortumor-derived adhesion factorspermatogenesis-associated protein 22testicular tissue protein Li 186testis development protein NYD-SP20
Modification date2020031320200313
UniProtAcc

Q16270

.
Ensembl transtripts involved in fusion geneENST idsENST00000512512, ENST00000295666, 
ENST00000537922, 
ENST00000268981, 
ENST00000355380, ENST00000397168, 
ENST00000541913, ENST00000572969, 
ENST00000573128, ENST00000575375, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score12 X 11 X 4=5284 X 4 X 3=48
# samples 114
** MAII scorelog2(11/528*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: IGFBP7 [Title/Abstract] AND SPATA22 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)IGFBP7(57906990)-SPATA22(3349895), # samples:2
Anticipated loss of major functional domain due to fusion event.IGFBP7-SPATA22 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
IGFBP7-SPATA22 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
IGFBP7-SPATA22 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
IGFBP7-SPATA22 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneIGFBP7

GO:0007155

cell adhesion

8117260


check buttonFusion gene breakpoints across IGFBP7 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SPATA22 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SKCMTCGA-ER-A197-06AIGFBP7chr4

57906990

-SPATA22chr17

3349895

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000295666IGFBP7chr457906990-ENST00000541913SPATA22chr173349895-1164619101038342
ENST00000295666IGFBP7chr457906990-ENST00000397168SPATA22chr173349895-1167619101038342
ENST00000295666IGFBP7chr457906990-ENST00000572969SPATA22chr173349895-1167619101038342
ENST00000295666IGFBP7chr457906990-ENST00000355380SPATA22chr173349895-1167619101038342
ENST00000295666IGFBP7chr457906990-ENST00000575375SPATA22chr173349895-1167619101038342
ENST00000295666IGFBP7chr457906990-ENST00000573128SPATA22chr173349895-1167619101038342
ENST00000295666IGFBP7chr457906990-ENST00000268981SPATA22chr173349895-84561910756248
ENST00000537922IGFBP7chr457906990-ENST00000541913SPATA22chr173349895-1164619101038342
ENST00000537922IGFBP7chr457906990-ENST00000397168SPATA22chr173349895-1167619101038342
ENST00000537922IGFBP7chr457906990-ENST00000572969SPATA22chr173349895-1167619101038342
ENST00000537922IGFBP7chr457906990-ENST00000355380SPATA22chr173349895-1167619101038342
ENST00000537922IGFBP7chr457906990-ENST00000575375SPATA22chr173349895-1167619101038342
ENST00000537922IGFBP7chr457906990-ENST00000573128SPATA22chr173349895-1167619101038342
ENST00000537922IGFBP7chr457906990-ENST00000268981SPATA22chr173349895-84561910756248

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000295666ENST00000541913IGFBP7chr457906990-SPATA22chr173349895-0.0033391370.9966608
ENST00000295666ENST00000397168IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000295666ENST00000572969IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000295666ENST00000355380IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000295666ENST00000575375IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000295666ENST00000573128IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000295666ENST00000268981IGFBP7chr457906990-SPATA22chr173349895-0.0893494040.91065055
ENST00000537922ENST00000541913IGFBP7chr457906990-SPATA22chr173349895-0.0033391370.9966608
ENST00000537922ENST00000397168IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000537922ENST00000572969IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000537922ENST00000355380IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000537922ENST00000575375IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000537922ENST00000573128IGFBP7chr457906990-SPATA22chr173349895-0.0030384460.99696153
ENST00000537922ENST00000268981IGFBP7chr457906990-SPATA22chr173349895-0.0893494040.91065055

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>38621_38621_1_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000295666_SPATA22_chr17_3349895_ENST00000268981_length(amino acids)=248AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV

--------------------------------------------------------------

>38621_38621_2_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000295666_SPATA22_chr17_3349895_ENST00000355380_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_3_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000295666_SPATA22_chr17_3349895_ENST00000397168_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_4_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000295666_SPATA22_chr17_3349895_ENST00000541913_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_5_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000295666_SPATA22_chr17_3349895_ENST00000572969_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_6_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000295666_SPATA22_chr17_3349895_ENST00000573128_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_7_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000295666_SPATA22_chr17_3349895_ENST00000575375_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_8_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000537922_SPATA22_chr17_3349895_ENST00000268981_length(amino acids)=248AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV

--------------------------------------------------------------

>38621_38621_9_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000537922_SPATA22_chr17_3349895_ENST00000355380_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_10_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000537922_SPATA22_chr17_3349895_ENST00000397168_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_11_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000537922_SPATA22_chr17_3349895_ENST00000541913_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_12_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000537922_SPATA22_chr17_3349895_ENST00000572969_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_13_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000537922_SPATA22_chr17_3349895_ENST00000573128_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

>38621_38621_14_IGFBP7-SPATA22_IGFBP7_chr4_57906990_ENST00000537922_SPATA22_chr17_3349895_ENST00000575375_length(amino acids)=342AA_BP=202
MPLPPHPAMERPSLRALLLGAAGLLLLLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCA
PGMECVKSRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAITQVSKGTCEQGPSIVTPPKDIWNV
TGAQVYLSCEVIGIPTPVLIWNKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKN

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr4:57906990/chr17:3349895)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
IGFBP7

Q16270

.
FUNCTION: Binds IGF-I and IGF-II with a relatively low affinity. Stimulates prostacyclin (PGI2) production. Stimulates cell adhesion. {ECO:0000269|PubMed:8117260, ECO:0000269|PubMed:8939990}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneIGFBP7chr4:57906990chr17:3349895ENST00000295666-25105_158195.0283.0DomainKazal-like
HgeneIGFBP7chr4:57906990chr17:3349895ENST00000295666-2528_106195.0283.0DomainIGFBP N-terminal
HgeneIGFBP7chr4:57906990chr17:3349895ENST00000537922-24105_158195.0280.0DomainKazal-like
HgeneIGFBP7chr4:57906990chr17:3349895ENST00000537922-2428_106195.0280.0DomainIGFBP N-terminal

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneIGFBP7chr4:57906990chr17:3349895ENST00000295666-25160_264195.0283.0DomainNote=Ig-like C2-type
HgeneIGFBP7chr4:57906990chr17:3349895ENST00000537922-24160_264195.0280.0DomainNote=Ig-like C2-type


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
IGFBP7
SPATA22


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to IGFBP7-SPATA22


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to IGFBP7-SPATA22


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource