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Fusion Protein:JUP-DDX41 |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: JUP-DDX41 | FusionPDB ID: 41064 | FusionGDB2.0 ID: 41064 | Hgene | Tgene | Gene symbol | JUP | DDX41 | Gene ID | 3728 | 51428 |
| Gene name | junction plakoglobin | DEAD-box helicase 41 | |
| Synonyms | CTNNG|DP3|DPIII|PDGB|PKGB | ABS|MPLPF | |
| Cytomap | 17q21.2 | 5q35.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | junction plakoglobincatenin (cadherin-associated protein), gamma 80kDadesmoplakin IIIdesmoplakin-3 | probable ATP-dependent RNA helicase DDX41DEAD (Asp-Glu-Ala-Asp) box polypeptide 41DEAD box protein 41DEAD box protein abstrakt homologDEAD-box protein abstraktputative RNA helicase | |
| Modification date | 20200313 | 20200320 | |
| UniProtAcc | P14923 | Q9UJV9 | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000310706, ENST00000393930, ENST00000393931, ENST00000540235, | ENST00000506965, ENST00000507955, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 22 X 25 X 12=6600 | 1 X 1 X 1=1 |
| # samples | 32 | 1 | |
| ** MAII score | log2(32/6600*10)=-4.36632221424582 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: JUP [Title/Abstract] AND DDX41 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | JUP(39913672)-DDX41(176938901), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | JUP-DDX41 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. JUP-DDX41 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. JUP-DDX41 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. JUP-DDX41 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | JUP | GO:0002159 | desmosome assembly | 22889254 |
| Hgene | JUP | GO:0042127 | regulation of cell proliferation | 17924338 |
| Hgene | JUP | GO:0042307 | positive regulation of protein import into nucleus | 10825188|14661054 |
| Hgene | JUP | GO:0050982 | detection of mechanical stimulus | 18937352 |
| Hgene | JUP | GO:0051091 | positive regulation of DNA-binding transcription factor activity | 14661054 |
| Hgene | JUP | GO:0071681 | cellular response to indole-3-methanol | 10868478 |
| Hgene | JUP | GO:0098609 | cell-cell adhesion | 18937352 |
| Fusion gene breakpoints across JUP (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across DDX41 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS5.0 | N/A | BE075620 | JUP | chr17 | 39913672 | - | DDX41 | chr5 | 176938901 | - |
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Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000393930 | JUP | chr17 | 39913672 | - | ENST00000507955 | DDX41 | chr5 | 176938901 | - | 2587 | 2263 | 217 | 2586 | 790 |
| ENST00000310706 | JUP | chr17 | 39913672 | - | ENST00000507955 | DDX41 | chr5 | 176938901 | - | 2489 | 2165 | 119 | 2488 | 790 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000393930 | ENST00000507955 | JUP | chr17 | 39913672 | - | DDX41 | chr5 | 176938901 | - | 0.4643317 | 0.53566825 |
| ENST00000310706 | ENST00000507955 | JUP | chr17 | 39913672 | - | DDX41 | chr5 | 176938901 | - | 0.1912339 | 0.8087661 |
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Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >41064_41064_1_JUP-DDX41_JUP_chr17_39913672_ENST00000310706_DDX41_chr5_176938901_ENST00000507955_length(amino acids)=790AA_BP=682 MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGL QKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKH LTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDD ITEPAVCALRHLTSRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQR HVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPL MELLHSRNEGTATYAAAVLFRISEDKNPDYRKRVSVELTNSLFKHDPAAWEAAWVIGSLTAPNSRLCRPSRSATSVARTTWPTAPWTSEP -------------------------------------------------------------- >41064_41064_2_JUP-DDX41_JUP_chr17_39913672_ENST00000393930_DDX41_chr5_176938901_ENST00000507955_length(amino acids)=790AA_BP=682 MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQGDLEYQMSTTARAKRVREAMC PGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGL QKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKH LTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDD ITEPAVCALRHLTSRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQR HVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPL MELLHSRNEGTATYAAAVLFRISEDKNPDYRKRVSVELTNSLFKHDPAAWEAAWVIGSLTAPNSRLCRPSRSATSVARTTWPTAPWTSEP -------------------------------------------------------------- |
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Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:39913672/chr5:176938901) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| JUP | DDX41 |
| FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton (By similarity). {ECO:0000250}. | FUNCTION: Probable ATP-dependent RNA helicase. Is required during post-transcriptional gene expression. May be involved in pre-mRNA splicing. {ECO:0000269|PubMed:25920683}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 132_171 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 1 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 172_215 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 2 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 216_255 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 3 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 258_297 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 4 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 298_341 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 5 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 342_381 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 6 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 383_420 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 7 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 423_464 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 8 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 470_510 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 9 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 512_551 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 10 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 574_613 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 11 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000310706 | - | 12 | 15 | 615_661 | 682.0 | 968.6666666666666 | Repeat | Note=ARM 12 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 132_171 | 682.0 | 936.0 | Repeat | Note=ARM 1 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 172_215 | 682.0 | 936.0 | Repeat | Note=ARM 2 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 216_255 | 682.0 | 936.0 | Repeat | Note=ARM 3 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 258_297 | 682.0 | 936.0 | Repeat | Note=ARM 4 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 298_341 | 682.0 | 936.0 | Repeat | Note=ARM 5 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 342_381 | 682.0 | 936.0 | Repeat | Note=ARM 6 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 383_420 | 682.0 | 936.0 | Repeat | Note=ARM 7 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 423_464 | 682.0 | 936.0 | Repeat | Note=ARM 8 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 470_510 | 682.0 | 936.0 | Repeat | Note=ARM 9 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 512_551 | 682.0 | 936.0 | Repeat | Note=ARM 10 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 574_613 | 682.0 | 936.0 | Repeat | Note=ARM 11 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393930 | - | 12 | 15 | 615_661 | 682.0 | 936.0 | Repeat | Note=ARM 12 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 132_171 | 682.0 | 746.0 | Repeat | Note=ARM 1 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 172_215 | 682.0 | 746.0 | Repeat | Note=ARM 2 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 216_255 | 682.0 | 746.0 | Repeat | Note=ARM 3 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 258_297 | 682.0 | 746.0 | Repeat | Note=ARM 4 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 298_341 | 682.0 | 746.0 | Repeat | Note=ARM 5 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 342_381 | 682.0 | 746.0 | Repeat | Note=ARM 6 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 383_420 | 682.0 | 746.0 | Repeat | Note=ARM 7 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 423_464 | 682.0 | 746.0 | Repeat | Note=ARM 8 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 470_510 | 682.0 | 746.0 | Repeat | Note=ARM 9 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 512_551 | 682.0 | 746.0 | Repeat | Note=ARM 10 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 574_613 | 682.0 | 746.0 | Repeat | Note=ARM 11 |
| Hgene | JUP | chr17:39913672 | chr5:176938901 | ENST00000393931 | - | 12 | 14 | 615_661 | 682.0 | 746.0 | Repeat | Note=ARM 12 |
| Tgene | DDX41 | chr17:39913672 | chr5:176938901 | ENST00000507955 | 0 | 17 | 212_396 | 0 | 623.0 | Domain | Helicase ATP-binding | |
| Tgene | DDX41 | chr17:39913672 | chr5:176938901 | ENST00000507955 | 0 | 17 | 407_567 | 0 | 623.0 | Domain | Helicase C-terminal | |
| Tgene | DDX41 | chr17:39913672 | chr5:176938901 | ENST00000507955 | 0 | 17 | 181_209 | 0 | 623.0 | Motif | Q motif | |
| Tgene | DDX41 | chr17:39913672 | chr5:176938901 | ENST00000507955 | 0 | 17 | 344_347 | 0 | 623.0 | Motif | DEAD box | |
| Tgene | DDX41 | chr17:39913672 | chr5:176938901 | ENST00000507955 | 0 | 17 | 225_232 | 0 | 623.0 | Nucleotide binding | ATP | |
| Tgene | DDX41 | chr17:39913672 | chr5:176938901 | ENST00000507955 | 0 | 17 | 580_597 | 0 | 623.0 | Zinc finger | Note=CCHC-type |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| JUP | |
| DDX41 |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to JUP-DDX41 |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to JUP-DDX41 |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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