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Fusion Protein:PLOD2-ABCG1 |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: PLOD2-ABCG1 | FusionPDB ID: 66390 | FusionGDB2.0 ID: 66390 | Hgene | Tgene | Gene symbol | PLOD2 | ABCG1 | Gene ID | 5352 | 9619 |
Gene name | procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 | ATP binding cassette subfamily G member 1 | |
Synonyms | BRKS2|LH2|TLH | ABC8|WHITE1 | |
Cytomap | 3q24 | 21q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | procollagen-lysine,2-oxoglutarate 5-dioxygenase 2lysine hydroxylase 2lysyl hydroxlase 2lysyl hydroxylase 2procollagen-lysine 5-dioxygenasetelopeptide lysyl hydroxylase | ATP-binding cassette sub-family G member 1ABC transporter 8ATP-binding cassette transporter 8ATP-binding cassette transporter member 1 of subfamily GATP-binding cassette, sub-family G (WHITE), member 1homolog of Drosophila whitewhite protein homolog | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | . | P45844 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000282903, ENST00000360060, ENST00000494950, ENST00000461497, | ENST00000343687, ENST00000347800, ENST00000361802, ENST00000398449, ENST00000462050, ENST00000340588, ENST00000398437, ENST00000398457, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 7 X 6 X 4=168 | 9 X 5 X 8=360 |
# samples | 7 | 10 | |
** MAII score | log2(7/168*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/360*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: PLOD2 [Title/Abstract] AND ABCG1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | PLOD2(145824319)-ABCG1(43645781), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | PLOD2-ABCG1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PLOD2-ABCG1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PLOD2-ABCG1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PLOD2-ABCG1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PLOD2-ABCG1 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. PLOD2-ABCG1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PLOD2 | GO:0006493 | protein O-linked glycosylation | 10934207 |
Hgene | PLOD2 | GO:0017185 | peptidyl-lysine hydroxylation | 10934207 |
Hgene | PLOD2 | GO:0046947 | hydroxylysine biosynthetic process | 10934207 |
Tgene | ABCG1 | GO:0008203 | cholesterol metabolic process | 15994327 |
Tgene | ABCG1 | GO:0033344 | cholesterol efflux | 15994327 |
Tgene | ABCG1 | GO:0033993 | response to lipid | 16556852 |
Tgene | ABCG1 | GO:0034436 | glycoprotein transport | 17293612 |
Tgene | ABCG1 | GO:0042632 | cholesterol homeostasis | 15994327 |
Tgene | ABCG1 | GO:0042987 | amyloid precursor protein catabolic process | 17293612 |
Tgene | ABCG1 | GO:0050714 | positive regulation of protein secretion | 17293612 |
Tgene | ABCG1 | GO:1902004 | positive regulation of amyloid-beta formation | 17293612 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-AO-A129-01A | PLOD2 | chr3 | 145824319 | - | ABCG1 | chr21 | 43645781 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000282903 | PLOD2 | chr3 | 145824319 | - | ENST00000398457 | ABCG1 | chr21 | 43645781 | + | 3604 | 793 | 130 | 2751 | 873 |
ENST00000360060 | PLOD2 | chr3 | 145824319 | - | ENST00000398457 | ABCG1 | chr21 | 43645781 | + | 3604 | 793 | 130 | 2751 | 873 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000282903 | ENST00000398457 | PLOD2 | chr3 | 145824319 | - | ABCG1 | chr21 | 43645781 | + | 0.000514735 | 0.99948525 |
ENST00000360060 | ENST00000398457 | PLOD2 | chr3 | 145824319 | - | ABCG1 | chr21 | 43645781 | + | 0.000514735 | 0.99948525 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >66390_66390_1_PLOD2-ABCG1_PLOD2_chr3_145824319_ENST00000282903_ABCG1_chr21_43645781_ENST00000398457_length(amino acids)=873AA_BP=221 MRGRGRLSPRGPRGPNMGGCTVKPQLLLLALVLHPWNPCLGADSEKPSSIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEE WRGGDGINSIGGGQKVRLMKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKRLADKYPVVHIGKRYL NSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYIDPLKRNASSYSAEMTEPKSVCVSVDEVVSSNMEATETDLLNGHLKKVDNNLTEA QRFSSLPRRAAVNIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLR CFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP TSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEY GDQNSRLVRAVREGMCDSDHKRDLGGDAEVNPFLWHRPSEEDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGL LIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMT SQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYG -------------------------------------------------------------- >66390_66390_2_PLOD2-ABCG1_PLOD2_chr3_145824319_ENST00000360060_ABCG1_chr21_43645781_ENST00000398457_length(amino acids)=873AA_BP=221 MRGRGRLSPRGPRGPNMGGCTVKPQLLLLALVLHPWNPCLGADSEKPSSIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEE WRGGDGINSIGGGQKVRLMKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKRLADKYPVVHIGKRYL NSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYIDPLKRNASSYSAEMTEPKSVCVSVDEVVSSNMEATETDLLNGHLKKVDNNLTEA QRFSSLPRRAAVNIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLR CFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP TSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEY GDQNSRLVRAVREGMCDSDHKRDLGGDAEVNPFLWHRPSEEDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGL LIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMT SQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYG -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:145824319/chr21:43645781) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | ABCG1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Catalyzes the efflux of phospholipids such as sphingomyelin, cholesterol and its oxygenated derivatives like 7beta-hydroxycholesterol and this transport is coupled to hydrlysis of ATP (PubMed:17408620, PubMed:24576892). The lipid efflux is ALB-dependent (PubMed:16702602). Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages. Prevents cell death by transporting cytotoxic 7beta-hydroxycholesterol (PubMed:17408620). {ECO:0000269|PubMed:16702602, ECO:0000269|PubMed:17408620, ECO:0000269|PubMed:24576892}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 415_673 | 25.0 | 678.0 | Domain | Note=ABC transmembrane type-2 | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 77_317 | 25.0 | 678.0 | Domain | ABC transporter | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 415_673 | 11.0 | 664.0 | Domain | Note=ABC transmembrane type-2 | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 77_317 | 11.0 | 664.0 | Domain | ABC transporter | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 415_673 | 14.0 | 679.0 | Domain | Note=ABC transmembrane type-2 | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 77_317 | 14.0 | 679.0 | Domain | ABC transporter | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 415_673 | 14.0 | 667.0 | Domain | Note=ABC transmembrane type-2 | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 77_317 | 14.0 | 667.0 | Domain | ABC transporter | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 415_673 | 16.0 | 669.0 | Domain | Note=ABC transmembrane type-2 | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 77_317 | 16.0 | 669.0 | Domain | ABC transporter | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 118_125 | 25.0 | 678.0 | Nucleotide binding | ATP | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 118_125 | 11.0 | 664.0 | Nucleotide binding | ATP | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 118_125 | 14.0 | 679.0 | Nucleotide binding | ATP | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 118_125 | 14.0 | 667.0 | Nucleotide binding | ATP | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 118_125 | 16.0 | 669.0 | Nucleotide binding | ATP | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 446_456 | 25.0 | 678.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 478_506 | 25.0 | 678.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 526_533 | 25.0 | 678.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 556_567 | 25.0 | 678.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 587_649 | 25.0 | 678.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 670_678 | 25.0 | 678.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 446_456 | 11.0 | 664.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 478_506 | 11.0 | 664.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 526_533 | 11.0 | 664.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 556_567 | 11.0 | 664.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 587_649 | 11.0 | 664.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 670_678 | 11.0 | 664.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 446_456 | 14.0 | 679.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 478_506 | 14.0 | 679.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 526_533 | 14.0 | 679.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 556_567 | 14.0 | 679.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 587_649 | 14.0 | 679.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 670_678 | 14.0 | 679.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 446_456 | 14.0 | 667.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 478_506 | 14.0 | 667.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 526_533 | 14.0 | 667.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 556_567 | 14.0 | 667.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 587_649 | 14.0 | 667.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 670_678 | 14.0 | 667.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 446_456 | 16.0 | 669.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 478_506 | 16.0 | 669.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 526_533 | 16.0 | 669.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 556_567 | 16.0 | 669.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 587_649 | 16.0 | 669.0 | Topological domain | Extracellular | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 670_678 | 16.0 | 669.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 427_445 | 25.0 | 678.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 457_477 | 25.0 | 678.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 507_525 | 25.0 | 678.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 534_555 | 25.0 | 678.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 568_586 | 25.0 | 678.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 650_669 | 25.0 | 678.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 427_445 | 11.0 | 664.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 457_477 | 11.0 | 664.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 507_525 | 11.0 | 664.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 534_555 | 11.0 | 664.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 568_586 | 11.0 | 664.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 650_669 | 11.0 | 664.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 427_445 | 14.0 | 679.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 457_477 | 14.0 | 679.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 507_525 | 14.0 | 679.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 534_555 | 14.0 | 679.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 568_586 | 14.0 | 679.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 650_669 | 14.0 | 679.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 427_445 | 14.0 | 667.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 457_477 | 14.0 | 667.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 507_525 | 14.0 | 667.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 534_555 | 14.0 | 667.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 568_586 | 14.0 | 667.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 650_669 | 14.0 | 667.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 427_445 | 16.0 | 669.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 457_477 | 16.0 | 669.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 507_525 | 16.0 | 669.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 534_555 | 16.0 | 669.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 568_586 | 16.0 | 669.0 | Transmembrane | Helical | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 650_669 | 16.0 | 669.0 | Transmembrane | Helical |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PLOD2 | chr3:145824319 | chr21:43645781 | ENST00000282903 | - | 5 | 20 | 644_737 | 205.0 | 759.0 | Domain | Fe2OG dioxygenase |
Hgene | PLOD2 | chr3:145824319 | chr21:43645781 | ENST00000360060 | - | 5 | 19 | 644_737 | 205.0 | 738.0 | Domain | Fe2OG dioxygenase |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000343687 | 0 | 15 | 1_426 | 25.0 | 678.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000347800 | 0 | 15 | 1_426 | 11.0 | 664.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000361802 | 0 | 15 | 1_426 | 14.0 | 679.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398449 | 0 | 15 | 1_426 | 14.0 | 667.0 | Topological domain | Cytoplasmic | |
Tgene | ABCG1 | chr3:145824319 | chr21:43645781 | ENST00000398457 | 1 | 16 | 1_426 | 16.0 | 669.0 | Topological domain | Cytoplasmic |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
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Gene | STRING network |
PLOD2 | |
ABCG1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to PLOD2-ABCG1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to PLOD2-ABCG1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |