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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:PRKCB-RPS2

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: PRKCB-RPS2
FusionPDB ID: 68738
FusionGDB2.0 ID: 68738
HgeneTgene
Gene symbol

PRKCB

RPS2

Gene ID

5579

6187

Gene nameprotein kinase C betaribosomal protein S2
SynonymsPKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2LLREP3|S2
Cytomap

16p12.2-p12.1

16p13.3

Type of geneprotein-codingprotein-coding
Descriptionprotein kinase C beta typePKC-Bprotein kinase C, beta 1 polypeptide40S ribosomal protein S240S ribosomal protein S4OK/KNS-cl.6protein LLRep3small ribosomal subunit protein uS5
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST idsENST00000303531, ENST00000321728, 
ENST00000482000, ENST00000498058, 
ENST00000343262, ENST00000526522, 
ENST00000529806, ENST00000530225, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score8 X 8 X 3=19210 X 8 X 4=320
# samples 811
** MAII scorelog2(8/192*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(11/320*10)=-1.5405683813627
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: PRKCB [Title/Abstract] AND RPS2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)PRKCB(24135302)-RPS2(2013257), # samples:1
Anticipated loss of major functional domain due to fusion event.PRKCB-RPS2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
PRKCB-RPS2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
PRKCB-RPS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
PRKCB-RPS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePRKCB

GO:0010827

regulation of glucose transmembrane transport

25982116

HgenePRKCB

GO:0035408

histone H3-T6 phosphorylation

20228790

TgeneRPS2

GO:0051443

positive regulation of ubiquitin-protein transferase activity

18573314


check buttonFusion gene breakpoints across PRKCB (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across RPS2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-KK-A8I7PRKCBchr16

24135302

+RPS2chr16

2013257

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000321728PRKCBchr1624135302+ENST00000343262RPS2chr162013257-190112401751854559
ENST00000321728PRKCBchr1624135302+ENST00000526522RPS2chr162013257-171912401751680501
ENST00000321728PRKCBchr1624135302+ENST00000530225RPS2chr162013257-173212401751566463
ENST00000321728PRKCBchr1624135302+ENST00000529806RPS2chr162013257-186912401751692505
ENST00000303531PRKCBchr1624135302+ENST00000343262RPS2chr162013257-187812171521831559
ENST00000303531PRKCBchr1624135302+ENST00000526522RPS2chr162013257-169612171521657501
ENST00000303531PRKCBchr1624135302+ENST00000530225RPS2chr162013257-170912171521543463
ENST00000303531PRKCBchr1624135302+ENST00000529806RPS2chr162013257-184612171521669505

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000321728ENST00000343262PRKCBchr1624135302+RPS2chr162013257-0.0084384260.9915616
ENST00000321728ENST00000526522PRKCBchr1624135302+RPS2chr162013257-0.0084346560.99156535
ENST00000321728ENST00000530225PRKCBchr1624135302+RPS2chr162013257-0.0058726830.9941273
ENST00000321728ENST00000529806PRKCBchr1624135302+RPS2chr162013257-0.007583530.9924165
ENST00000303531ENST00000343262PRKCBchr1624135302+RPS2chr162013257-0.0084442860.99155575
ENST00000303531ENST00000526522PRKCBchr1624135302+RPS2chr162013257-0.0082514310.9917486
ENST00000303531ENST00000530225PRKCBchr1624135302+RPS2chr162013257-0.0057034950.9942965
ENST00000303531ENST00000529806PRKCBchr1624135302+RPS2chr162013257-0.0074578830.99254215

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>68738_68738_1_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000303531_RPS2_chr16_2013257_ENST00000343262_length(amino acids)=559AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV
TGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLV

--------------------------------------------------------------

>68738_68738_2_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000303531_RPS2_chr16_2013257_ENST00000526522_length(amino acids)=501AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFD

--------------------------------------------------------------

>68738_68738_3_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000303531_RPS2_chr16_2013257_ENST00000529806_length(amino acids)=505AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV

--------------------------------------------------------------

>68738_68738_4_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000303531_RPS2_chr16_2013257_ENST00000530225_length(amino acids)=463AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKP

--------------------------------------------------------------

>68738_68738_5_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000321728_RPS2_chr16_2013257_ENST00000343262_length(amino acids)=559AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV
TGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLV

--------------------------------------------------------------

>68738_68738_6_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000321728_RPS2_chr16_2013257_ENST00000526522_length(amino acids)=501AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFD

--------------------------------------------------------------

>68738_68738_7_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000321728_RPS2_chr16_2013257_ENST00000529806_length(amino acids)=505AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV

--------------------------------------------------------------

>68738_68738_8_PRKCB-RPS2_PRKCB_chr16_24135302_ENST00000321728_RPS2_chr16_2013257_ENST00000530225_length(amino acids)=463AA_BP=355
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKP

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr16:24135302/chr16:2013257)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917158_275355.0674.0DomainC2
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917158_275355.0672.0DomainC2
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917348_356355.0674.0Nucleotide bindingATP
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917348_356355.0672.0Nucleotide bindingATP
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917101_151355.0674.0Zinc fingerPhorbol-ester/DAG-type 2
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+91736_86355.0674.0Zinc fingerPhorbol-ester/DAG-type 1
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917101_151355.0672.0Zinc fingerPhorbol-ester/DAG-type 2
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+91736_86355.0672.0Zinc fingerPhorbol-ester/DAG-type 1
TgeneRPS2chr16:24135302chr16:2013257ENST0000034326227102_16589.0294.0DomainS5 DRBM

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917342_600355.0674.0DomainProtein kinase
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917601_671355.0674.0DomainAGC-kinase C-terminal
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917342_600355.0672.0DomainProtein kinase
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917601_671355.0672.0DomainAGC-kinase C-terminal
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12158_275058.0DomainC2
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12342_600058.0DomainProtein kinase
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12601_671058.0DomainAGC-kinase C-terminal
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12348_356058.0Nucleotide bindingATP
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12101_151058.0Zinc fingerPhorbol-ester/DAG-type 2
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+1236_86058.0Zinc fingerPhorbol-ester/DAG-type 1
TgeneRPS2chr16:24135302chr16:2013257ENST000003432622722_5389.0294.0Compositional biasNote=Arg/Gly-rich


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
PRKCB
RPS2


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to PRKCB-RPS2


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to PRKCB-RPS2


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource