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Fusion Protein:RGPD1-RANBP2 |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: RGPD1-RANBP2 | FusionPDB ID: 73775 | FusionGDB2.0 ID: 73775 | Hgene | Tgene | Gene symbol | RGPD1 | RANBP2 | Gene ID | 400966 | 5903 |
Gene name | RANBP2 like and GRIP domain containing 1 | RAN binding protein 2 | |
Synonyms | RGP1|RGPD2|RanBP2L2 | ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 | |
Cytomap | 2p11.2 | 2q13 | |
Type of gene | protein-coding | protein-coding | |
Description | RANBP2-like and GRIP domain-containing protein 1RANBP2-like and GRIP domain-containing protein 1/2ran-binding protein 2-like 2/6ran-binding protein 2-like 6ranBP2-like 2/6ranBP2-like 6ranBP2L6 | E3 SUMO-protein ligase RanBP2358 kDa nucleoporinE3 SUMO-protein transferase RanBP2P270acute necrotizing encephalopathy 1 (autosomal dominant)nuclear pore complex protein Nup358nucleoporin 358nucleoporin Nup358ran-binding protein 2transformation-r | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | RGPD8 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000398193, ENST00000409776, ENST00000559485, | ENST00000283195, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 6 X 3 X 2=36 | 14 X 14 X 3=588 |
# samples | 5 | 14 | |
** MAII score | log2(5/36*10)=0.473931188332412 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(14/588*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: RGPD1 [Title/Abstract] AND RANBP2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | RGPD1(87203413)-RANBP2(109369453), # samples:10 | ||
Anticipated loss of major functional domain due to fusion event. | RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. RGPD1-RANBP2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | RANBP2 | GO:0016925 | protein sumoylation | 17264123|22155184 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | Non-Cancer | SPNT_056 | RGPD1 | chr2 | 87203413 | + | RANBP2 | chr2 | 109369453 | + |
ChimerDB4 | Non-Cancer | SPNT_079 | RGPD1 | chr2 | 87203413 | + | RANBP2 | chr2 | 109369453 | + |
ChimerDB4 | Non-Cancer | SPNT_100 | RGPD1 | chr2 | 87203413 | + | RANBP2 | chr2 | 109369453 | + |
ChimerDB4 | Non-Cancer | SPNT_228 | RGPD1 | chr2 | 87203413 | + | RANBP2 | chr2 | 109369453 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000409776 | RGPD1 | chr2 | 87203413 | + | ENST00000283195 | RANBP2 | chr2 | 109369453 | + | 11874 | 2044 | 16 | 9963 | 3315 |
ENST00000398193 | RGPD1 | chr2 | 87203413 | + | ENST00000283195 | RANBP2 | chr2 | 109369453 | + | 11920 | 2090 | 38 | 10009 | 3323 |
ENST00000559485 | RGPD1 | chr2 | 87203413 | + | ENST00000283195 | RANBP2 | chr2 | 109369453 | + | 11874 | 2044 | 16 | 9963 | 3315 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >73775_73775_1_RGPD1-RANBP2_RGPD1_chr2_87203413_ENST00000398193_RANBP2_chr2_109369453_ENST00000283195_length(amino acids)=3323AA_BP=638 MRRSKAYGERYLASVQGSAPSPGKKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNP PQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRL KDAVARCHEAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKS SLGGNDELSATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLN LSRGKQDFLKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPAL PGIRKWLKQLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIH RKAVPGNSAELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFK HFHSVDIQASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALGSGLNSFYDQREYIGRSVHYWKKVLPLLKIIKKKNS IPEPIDPLFKHFHSVDIQASEIVEYEEDAHITFAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALSPEEQEECKNYL RKTRDYLIKIIDDSDSNLSVVKKLPVPLESVKEMLNSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTRYSLSPSKSYKYSPKTPP RWAEDQNSLLKMICQQVEAIKKEMQELKLNSSNSASPHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRP AANVTPTKGPVYGMNRLPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALRFESPATGILSPRGDDYFNYNVQQTSTNPPLPEPGYF TKPPIAAHASRSAESKTIEFGKTNFVQPMPGEGLRPSLPTQAHTTQPTPFKFNSNFKSNDGDFTFSSPQVVTQPPPAAYSNSESLLGLLT SDKPLQGDGYSGAKPIPGGQTIGPRNTFNFGSKNVSGISFTENMGSSQQKNSGFRRSDDMFTFHGPGKSVFGTPTLETANKNHETDGGSA HGDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPD MKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQAVRIVKEPTSHDNKDICKSDAGN LNFEFQVAKKEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPT VSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPASF KFGTSETSKTLKSGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSGFEGMFTKKEGQWD CSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAV STPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISKAPKSGFEGMFIRKGQWDCSVCC VQNESSSLKCVACDASKPTHKPIAEAPSAFTLGSEMKLHDSSGSQVGTGFKSNFSEKASKFGNTEQGFKFGHVDQENSPSFMFQGSSNTE FKSTKEGFSIPVSADGFKFGISEPGNQEKKSEKPLENGTGFQAQDISGQKNGRGVIFGQTSSTFTFADLAKSTSGEGFQFGKKDPNFKGF SGAGEKLFSSQYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLK ILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPL QTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDSVSSS SVHASPLASSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQV VFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLAV RFKLQDVADSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVEVSSTSETTPKAVVSP PKFVFGSESVKSIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKSNNSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLFASFP TEESSINYTFKTPEKAKEKKKPEDSPSDDDVLIVYELTPTAEQKALATKLKLPPTFFCYKNRPDYVSEEEEDDEDFETAVKKLNGKLYLD GSEKCRPLEENTADNEKECIIVWEKKPTVEEKAKADTLKLPPTFFCGVCSDTDEDNGNGEDFQSELQKVQEAQKSQTEEITSTTDSVYTG GTEVMVPSFCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASSNSGDFAFGSKDKNFQ WANTGAAVFGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKIL WHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKGH VSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGD -------------------------------------------------------------- >73775_73775_2_RGPD1-RANBP2_RGPD1_chr2_87203413_ENST00000409776_RANBP2_chr2_109369453_ENST00000283195_length(amino acids)=3315AA_BP=630 MNVMGFNTDRLAWTRNKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNPPQKDLVLK IAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRLKDAVARCH EAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKSSLGGNDEL SATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLNLSRGKQDF LKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPALPGIRKWLK QLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIHRKAVPGNS AELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQ ASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALGSGLNSFYDQREYIGRSVHYWKKVLPLLKIIKKKNSIPEPIDPL FKHFHSVDIQASEIVEYEEDAHITFAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALSPEEQEECKNYLRKTRDYLI KIIDDSDSNLSVVKKLPVPLESVKEMLNSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTRYSLSPSKSYKYSPKTPPRWAEDQNS LLKMICQQVEAIKKEMQELKLNSSNSASPHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTK GPVYGMNRLPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALRFESPATGILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAH ASRSAESKTIEFGKTNFVQPMPGEGLRPSLPTQAHTTQPTPFKFNSNFKSNDGDFTFSSPQVVTQPPPAAYSNSESLLGLLTSDKPLQGD GYSGAKPIPGGQTIGPRNTFNFGSKNVSGISFTENMGSSQQKNSGFRRSDDMFTFHGPGKSVFGTPTLETANKNHETDGGSAHGDDDDDG PHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAG SDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQAVRIVKEPTSHDNKDICKSDAGNLNFEFQVA KKEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPTVSRCIACQ NTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPASFKFGTSETS KTLKSGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSGFEGMFTKKEGQWDCSVCLVRN EASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSET SKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISKAPKSGFEGMFIRKGQWDCSVCCVQNESSSL KCVACDASKPTHKPIAEAPSAFTLGSEMKLHDSSGSQVGTGFKSNFSEKASKFGNTEQGFKFGHVDQENSPSFMFQGSSNTEFKSTKEGF SIPVSADGFKFGISEPGNQEKKSEKPLENGTGFQAQDISGQKNGRGVIFGQTSSTFTFADLAKSTSGEGFQFGKKDPNFKGFSGAGEKLF SSQYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNG KLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVD TGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDSVSSSSVHASPLA SSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKL YRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLAVRFKLQDVA DSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVEVSSTSETTPKAVVSPPKFVFGSE SVKSIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKSNNSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLFASFPTEESSINY TFKTPEKAKEKKKPEDSPSDDDVLIVYELTPTAEQKALATKLKLPPTFFCYKNRPDYVSEEEEDDEDFETAVKKLNGKLYLDGSEKCRPL EENTADNEKECIIVWEKKPTVEEKAKADTLKLPPTFFCGVCSDTDEDNGNGEDFQSELQKVQEAQKSQTEEITSTTDSVYTGGTEVMVPS FCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASSNSGDFAFGSKDKNFQWANTGAAV FGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYY RILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKGHVSLAAELS KETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFD -------------------------------------------------------------- >73775_73775_3_RGPD1-RANBP2_RGPD1_chr2_87203413_ENST00000559485_RANBP2_chr2_109369453_ENST00000283195_length(amino acids)=3315AA_BP=630 MNVMGFNTDRLAWTRNKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNPPQKDLVLK IAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRLKDAVARCH EAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKSSLGGNDEL SATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLNLSRGKQDF LKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPALPGIRKWLK QLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIHRKAVPGNS AELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQ ASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALGSGLNSFYDQREYIGRSVHYWKKVLPLLKIIKKKNSIPEPIDPL FKHFHSVDIQASEIVEYEEDAHITFAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALSPEEQEECKNYLRKTRDYLI KIIDDSDSNLSVVKKLPVPLESVKEMLNSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTRYSLSPSKSYKYSPKTPPRWAEDQNS LLKMICQQVEAIKKEMQELKLNSSNSASPHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTK GPVYGMNRLPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALRFESPATGILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAH ASRSAESKTIEFGKTNFVQPMPGEGLRPSLPTQAHTTQPTPFKFNSNFKSNDGDFTFSSPQVVTQPPPAAYSNSESLLGLLTSDKPLQGD GYSGAKPIPGGQTIGPRNTFNFGSKNVSGISFTENMGSSQQKNSGFRRSDDMFTFHGPGKSVFGTPTLETANKNHETDGGSAHGDDDDDG PHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAG SDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQAVRIVKEPTSHDNKDICKSDAGNLNFEFQVA KKEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPTVSRCIACQ NTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPASFKFGTSETS KTLKSGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSGFEGMFTKKEGQWDCSVCLVRN EASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSET SKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISKAPKSGFEGMFIRKGQWDCSVCCVQNESSSL KCVACDASKPTHKPIAEAPSAFTLGSEMKLHDSSGSQVGTGFKSNFSEKASKFGNTEQGFKFGHVDQENSPSFMFQGSSNTEFKSTKEGF SIPVSADGFKFGISEPGNQEKKSEKPLENGTGFQAQDISGQKNGRGVIFGQTSSTFTFADLAKSTSGEGFQFGKKDPNFKGFSGAGEKLF SSQYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNG KLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVD TGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDSVSSSSVHASPLA SSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKL YRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLAVRFKLQDVA DSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVEVSSTSETTPKAVVSPPKFVFGSE SVKSIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKSNNSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLFASFPTEESSINY TFKTPEKAKEKKKPEDSPSDDDVLIVYELTPTAEQKALATKLKLPPTFFCYKNRPDYVSEEEEDDEDFETAVKKLNGKLYLDGSEKCRPL EENTADNEKECIIVWEKKPTVEEKAKADTLKLPPTFFCGVCSDTDEDNGNGEDFQSELQKVQEAQKSQTEEITSTTDSVYTGGTEVMVPS FCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASSNSGDFAFGSKDKNFQWANTGAAV FGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYY RILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKGHVSLAAELS KETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFD -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:87203413/chr2:109369453) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | RANBP2 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | 1765 |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000409776 | + | 14 | 23 | 51_84 | 676.0 | 1749.0 | Repeat | Note=TPR 1 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000409776 | + | 14 | 23 | 575_608 | 676.0 | 1749.0 | Repeat | Note=TPR 2 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000409776 | + | 14 | 23 | 639_672 | 676.0 | 1749.0 | Repeat | Note=TPR 3 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000559485 | + | 14 | 23 | 51_84 | 676.0 | 1749.0 | Repeat | Note=TPR 1 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000559485 | + | 14 | 23 | 575_608 | 676.0 | 1749.0 | Repeat | Note=TPR 2 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000559485 | + | 14 | 23 | 639_672 | 676.0 | 1749.0 | Repeat | Note=TPR 3 |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1171_1307 | 585.0 | 3225.0 | Domain | RanBD1 1 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2012_2148 | 585.0 | 3225.0 | Domain | RanBD1 2 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2309_2445 | 585.0 | 3225.0 | Domain | RanBD1 3 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2911_3046 | 585.0 | 3225.0 | Domain | RanBD1 4 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 3067_3223 | 585.0 | 3225.0 | Domain | PPIase cyclophilin-type | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1001_3206 | 585.0 | 3225.0 | Region | 22 X 2 AA repeats of F-G | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2633_2710 | 585.0 | 3225.0 | Region | Note=Required for E3 SUMO-ligase activity | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2633_2761 | 585.0 | 3225.0 | Region | Note=2 X 50 AA approximate repeats | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1001_1002 | 585.0 | 3225.0 | Repeat | 1 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1101_1102 | 585.0 | 3225.0 | Repeat | 2 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1142_1143 | 585.0 | 3225.0 | Repeat | 3 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1459_1460 | 585.0 | 3225.0 | Repeat | 4 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1523_1524 | 585.0 | 3225.0 | Repeat | 5 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1586_1587 | 585.0 | 3225.0 | Repeat | 6 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1852_1853 | 585.0 | 3225.0 | Repeat | 7 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1861_1862 | 585.0 | 3225.0 | Repeat | 8 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1900_1901 | 585.0 | 3225.0 | Repeat | 9 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1938_1939 | 585.0 | 3225.0 | Repeat | 10 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1961_1962 | 585.0 | 3225.0 | Repeat | 11 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2260_2261 | 585.0 | 3225.0 | Repeat | 12 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2516_2517 | 585.0 | 3225.0 | Repeat | 13 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2535_2536 | 585.0 | 3225.0 | Repeat | 14 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2545_2546 | 585.0 | 3225.0 | Repeat | 15 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2711_2761 | 585.0 | 3225.0 | Repeat | 2 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2840_2841 | 585.0 | 3225.0 | Repeat | 16 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2842_2843 | 585.0 | 3225.0 | Repeat | 17 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2863_2864 | 585.0 | 3225.0 | Repeat | 18 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 2880_2881 | 585.0 | 3225.0 | Repeat | 19 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 3106_3107 | 585.0 | 3225.0 | Repeat | 20 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 3189_3190 | 585.0 | 3225.0 | Repeat | 21 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 3205_3206 | 585.0 | 3225.0 | Repeat | 22 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 583_616 | 585.0 | 3225.0 | Repeat | TPR 6 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 648_681 | 585.0 | 3225.0 | Repeat | TPR 7 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1351_1381 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 1 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1415_1444 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 2 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1479_1508 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 3 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1543_1572 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 4 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1606_1635 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 5 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1665_1694 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 6 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1724_1753 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 7 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 1781_1810 | 585.0 | 3225.0 | Zinc finger | RanBP2-type 8 |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000409776 | + | 14 | 23 | 1021_1157 | 676.0 | 1749.0 | Domain | RanBD1 1 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000409776 | + | 14 | 23 | 1318_1454 | 676.0 | 1749.0 | Domain | RanBD1 2 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000409776 | + | 14 | 23 | 1685_1735 | 676.0 | 1749.0 | Domain | GRIP |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000559485 | + | 14 | 23 | 1021_1157 | 676.0 | 1749.0 | Domain | RanBD1 1 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000559485 | + | 14 | 23 | 1318_1454 | 676.0 | 1749.0 | Domain | RanBD1 2 |
Hgene | RGPD1 | chr2:87203413 | chr2:109369453 | ENST00000559485 | + | 14 | 23 | 1685_1735 | 676.0 | 1749.0 | Domain | GRIP |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 165_201 | 585.0 | 3225.0 | Repeat | TPR 4 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 26_59 | 585.0 | 3225.0 | Repeat | TPR 1 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 287_319 | 585.0 | 3225.0 | Repeat | TPR 5 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 60_93 | 585.0 | 3225.0 | Repeat | TPR 2 | |
Tgene | RANBP2 | chr2:87203413 | chr2:109369453 | ENST00000283195 | 11 | 29 | 94_128 | 585.0 | 3225.0 | Repeat | TPR 3 |
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Fusion Protein Structures |
![]() * Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
Fusion protein PDB link (fusion AA seq ID in FusionPDB) | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | AA seq | Len(AA seq) |
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pLDDT score distribution |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
RGPD1_pLDDT.png![]() |
RANBP2_pLDDT.png![]() |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
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Ramachandran Plot of Fusion Protein Structure |
![]() |
Fusion AA seq ID in FusionPDB and their Ramachandran plots |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
RANBP2 | UBE2I, KPNB1, KPNA1, RAN, Ube2i, OPN1LW, Psmd4, Psmc6, Psmd1, CDC73, AIRE, PARK2, LRPAP1, APC, TAF1, IFT140, AKAP13, FHOD1, ARID4B, CDCA8, HDAC4, tat, RANGAP1, MYC, Plk1, Ranbp2, Kifc5b, CALM1, CEBPA, PSMD1, SIRT7, SENP1, TP53, RAPGEF3, KIFAP3, KIF3A, TOP2B, KIF5B, KIF5C, SP100, NUP214, NUP153, Rangap1, PML, CUL2, NXF1, MATR3, ILF2, EEF1A1, HNRNPK, HNRNPF, HNRNPM, DDX17, SMU1, RRS1, CHMP2A, FLNA, IK, HNRNPH1, DHX15, DHX9, RPS14, TRIM55, PRKDC, M6PR, RRP7A, HSPA1L, ALB, vpu, MMS19, LMNA, ADRB2, BAG3, KPNA2, CUL1, SUMO1, SUMO2, NLK, UBTD1, LGR4, CHFR, CUL7, OBSL1, CCDC8, SUZ12, EED, RNF2, BMI1, RANBP2, NUP62, NUSAP1, COMTD1, SCGN, NUP50, RCC1, ZACN, IER2, FBXW11, CLTC, EFTUD2, IPO5, COL4A3BP, HNRNPC, MED13, PRPF8, PTGES3, RALY, RPLP0, SNRNP200, SRRM1, TOP2A, TUBB, UQCRC2, VCP, KIF3B, NUP43, NUP85, NUP107, NUP133, NUP160, NUP35, NUPL1, SEH1L, Mad2l1, Rcc1, Nup107, Cenpf, Kifc1, Nup155, Nup214, Nup98, FOXB1, CRY2, FOXL1, PRMT5, FOXQ1, WAS, UBA2, MCM2, SNW1, CDC5L, NFATC2, ZNF746, CTDSPL2, PPM1D, B2M, TMEM194A, TRAF3IP3, MDM2, TES, CFTR, MAP2K7, UBE2M, EGLN3, CTNNB1, SLC25A1, BCL2L1, HSPA8, UBE2L6, PIH1D1, TNIP2, RNF4, RNF31, CDC34, ESR2, EZH2, RECQL4, DCPS, WDR76, HIST1H4A, HIST1H2BB, KIAA1429, ATG16L1, RBX1, H2AFX, TPT1, TRADD, NR2C2, GBF1, BICD2, AK3, TNFSF13B, DUSP2, RHBDD1, RHBDF2, BIRC3, LMBR1L, TRIM28, PLEKHA4, MAGEA3, PINK1, FANCD2, PTEN, RALB, EMC1, EMC2, MMGT1, PLBD1, HSPD1, DNAAF3, RAD50, ANKRD55, ESR1, MAU2, MYBPC2, PDLIM3, HSCB, CIT, KIF14, KIF20A, PRC1, NDN, NFX1, RSAD2, NUPR1, C18orf8, CIC, BRD4, LGALS9, KDF1, PCNA, RECQL5, SYNE3, NFKBIA, HTRA4, DDX39A, WDR5, DAXX, NAA40, RGPD1, NPIPB6, PIP, ESRP1, S100A6, BTF3, SLFN11, RCHY1, SIRT6, PLK1, ARRB2, |
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Gene | STRING network |
RGPD1 | |
RANBP2 | ![]() |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to RGPD1-RANBP2 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to RGPD1-RANBP2 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | RANBP2 | C2675556 | ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Tgene | RANBP2 | C0334121 | Inflammatory Myofibroblastic Tumor | 2 | CTD_human;ORPHANET |
Tgene | RANBP2 | C0018199 | Granuloma, Plasma Cell | 1 | CTD_human |
Tgene | RANBP2 | C4706387 | Acute necrotizing encephalopathy of childhood | 1 | ORPHANET |