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Fusion Protein:BAZ2B-ITGB6 |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: BAZ2B-ITGB6 | FusionPDB ID: 9061 | FusionGDB2.0 ID: 9061 | Hgene | Tgene | Gene symbol | BAZ2B | ITGB6 | Gene ID | 29994 | 3694 |
| Gene name | bromodomain adjacent to zinc finger domain 2B | integrin subunit beta 6 | |
| Synonyms | WALp4 | AI1H | |
| Cytomap | 2q24.2 | 2q24.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | bromodomain adjacent to zinc finger domain protein 2B | integrin beta-6integrin, beta 6 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q9UIF8 | P18564 | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000343439, ENST00000355831, ENST00000392782, ENST00000392783, ENST00000483316, | ENST00000409872, ENST00000409967, ENST00000428609, ENST00000485635, ENST00000283249, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 19 X 14 X 12=3192 | 8 X 6 X 8=384 |
| # samples | 22 | 10 | |
| ** MAII score | log2(22/3192*10)=-3.85888522269769 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/384*10)=-1.94110631094643 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: BAZ2B [Title/Abstract] AND ITGB6 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | BAZ2B(160229556)-ITGB6(161030650), # samples:2 BAZ2B(160472752)-ITGB6(161030650), # samples:2 ITGB6(160964190)-BAZ2B(160335232), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | BAZ2B-ITGB6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. BAZ2B-ITGB6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. BAZ2B-ITGB6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. BAZ2B-ITGB6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | ITGB6 | GO:0033627 | cell adhesion mediated by integrin | 17158881 |
| Tgene | ITGB6 | GO:1901388 | regulation of transforming growth factor beta activation | 22278742 |
| Fusion gene breakpoints across BAZ2B (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across ITGB6 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | ESCA | TCGA-L5-A8NE | BAZ2B | chr2 | 160472752 | - | ITGB6 | chr2 | 161030650 | - |
| ChimerDB4 | UCEC | TCGA-A5-A7WK-01A | BAZ2B | chr2 | 160229556 | - | ITGB6 | chr2 | 161030650 | - |
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Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000355831 | BAZ2B | chr2 | 160229556 | - | ENST00000283249 | ITGB6 | chr2 | 161030650 | - | 8307 | 4463 | 352 | 4518 | 1388 |
| ENST00000343439 | BAZ2B | chr2 | 160229556 | - | ENST00000283249 | ITGB6 | chr2 | 161030650 | - | 8109 | 4265 | 352 | 4320 | 1322 |
| ENST00000392782 | BAZ2B | chr2 | 160229556 | - | ENST00000283249 | ITGB6 | chr2 | 161030650 | - | 8322 | 4478 | 373 | 4533 | 1386 |
| ENST00000392783 | BAZ2B | chr2 | 160229556 | - | ENST00000283249 | ITGB6 | chr2 | 161030650 | - | 8553 | 4709 | 496 | 4764 | 1422 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000355831 | ENST00000283249 | BAZ2B | chr2 | 160229556 | - | ITGB6 | chr2 | 161030650 | - | 0.000691591 | 0.99930835 |
| ENST00000343439 | ENST00000283249 | BAZ2B | chr2 | 160229556 | - | ITGB6 | chr2 | 161030650 | - | 0.000433685 | 0.99956626 |
| ENST00000392782 | ENST00000283249 | BAZ2B | chr2 | 160229556 | - | ITGB6 | chr2 | 161030650 | - | 0.000688193 | 0.9993118 |
| ENST00000392783 | ENST00000283249 | BAZ2B | chr2 | 160229556 | - | ITGB6 | chr2 | 161030650 | - | 0.000456766 | 0.9995433 |
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Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >9061_9061_1_BAZ2B-ITGB6_BAZ2B_chr2_160229556_ENST00000343439_ITGB6_chr2_161030650_ENST00000283249_length(amino acids)=1322AA_BP=1304 MESGERLPSSAASSTTPTSSSTPSVASVVSKGGLSTGVASLSSTINPCGHLFRTAGDQPFNLSTVSSAFPMVSHPVFGLHSASSGHSEFG GLGTLGTPTALAAHPQLASFPEWWRTTDAHTRTGATFFPPLLGIPPLFAPPAQNHDSSSFHSRTSGKSNRNGPEKGVNGSINGSNTSSVI GINTSVLSTTASSSMGQTKSTSSGGGNRKCNQEQSKNQPLDARVDKIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDE EEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKADGQKATEKAQEKRIHQPLPLASESQTHSFQSQQKQPQVLSQQLPFIFQSSQ AKEESVNKHTSVIQSTGLVSNVKPLSLVNQAKKETYMKLIVPSPDVLKAGNKNTSEESSLLTSELRSKREQYKQAFPSQLKKQESSKSLK KVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQSKINENIAAASSTPFSSPVNLSTSGR RTPGNQTPVMPSASPILHSQGKEKAVSNNVNPVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQ SGTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRDNFSFSAKIRVGDFYEARDG PQGMQWCLLKEEDVIPRIRAMEGRRGRPPNPDRQRAREESRMRRRKGRPPNVGNAEFLDNADAKLLRKLQAQEIARQAAQIKLLRKLQKQ EQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLL KHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTF SDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEIL QIFMEAHCGQTELTESLKTKAFQAHTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSG GIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQIEKLSKQQSQ -------------------------------------------------------------- >9061_9061_2_BAZ2B-ITGB6_BAZ2B_chr2_160229556_ENST00000355831_ITGB6_chr2_161030650_ENST00000283249_length(amino acids)=1388AA_BP=1370 MESGERLPSSAASSTTPTSSSTPSVASVVSKGGLSTGVASLSSTINPCGHLFRTAGDQPFNLSTVSSAFPMVSHPVFGLHSASSGHSEFG GLGTLGTPTALAAHPQLASFPGAEWWRTTDAHTRTGATFFPPLLGIPPLFAPPAQNHDSSSFHSRTSGKSNRNGPEKGVNGSINGSNTSS VIGINTSVLSTTASSSMGQTKSTSSGGGNRKCNQEQSKNQPLDARVDKIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEE DEEEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKADGQKATEKAQEKRIHQPLPLASESQTHSFQSQQKQPQVLSQQLPFIFQS SQAKEESVNKHTSVIQSTGLVSNVKPLSLVNQAKKETYMKLIVPSPDVLKAGNKNTSEESSLLTSELRSKREQYKQAFPSQLKKQESSKS LKKVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQSKINENIAAASSTPFSSPVNLSTS GRRTPGNQTPVMPSASPILHSQGKEKAVSNNVNPVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDD SQSESDSNSESDTEGSEEEDDDDKDQDESDSDTEGEKTSMKLNKTTSSVKSPSMSLTGHSTPRNLHIAKAPGSAPAALCSESQSPAFLGT SSSTLTSSPHSGTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKGMQWCLLKEEDVIPRIRAMEGR RGRPPNPDRQRAREESRMRRRKGRPPNVGNAEFLDNADAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQ KEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKA EEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNID VPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEILQIFMEAHCGQTELTESLKTKAFQA HTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSGGIDLGEEQHPLGTPTPGRKRRRKG GDSDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSVMFGQDRYRR -------------------------------------------------------------- >9061_9061_3_BAZ2B-ITGB6_BAZ2B_chr2_160229556_ENST00000392782_ITGB6_chr2_161030650_ENST00000283249_length(amino acids)=1386AA_BP=1368 MESGERLPSSAASSTTPTSSSTPSVASVVSKGGLSTGVASLSSTINPCGHLFRTAGDQPFNLSTVSSAFPMVSHPVFGLHSASSGHSEFG GLGTLGTPTALAAHPQLASFPEWWRTTDAHTRTGATFFPPLLGIPPLFAPPAQNHDSSSFHSRTSGKSNRNGPEKGVNGSINGSNTSSVI GINTSVLSTTASSSMGQTKSTSSGGGNRKCNQEQSKNQPLDARVDKIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDE EEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKADGQKATEKAQEKRIHQPLPLASESQTHSFQSQQKQPQVLSQQLPFIFQSSQ AKEESVNKHTSVIQSTGLVSNVKPLSLVNQAKKETYMKLIVPSPDVLKAGNKNTSEESSLLTSELRSKREQYKQAFPSQLKKQESSKSLK KVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQSKINENIAAASSTPFSSPVNLSTSGR RTPGNQTPVMPSASPILHSQGKEKAVSNNVNPVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQ SESDSNSESDTEGSEEEDDDDKDQDESDSDTEGEKTSMKLNKTTSSVKSPSMSLTGHSTPRNLHIAKAPGSAPAALCSESQSPAFLGTSS STLTSSPHSGTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKGMQWCLLKEEDVIPRIRAMEGRRG RPPNPDRQRAREESRMRRRKGRPPNVGNAEFLDNADAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKE QIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEE KERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNIDVP NLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEILQIFMEAHCGQTELTESLKTKAFQAHT PAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSGGIDLGEEQHPLGTPTPGRKRRRKGGD SDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSVMFGQDRYRRRY -------------------------------------------------------------- >9061_9061_4_BAZ2B-ITGB6_BAZ2B_chr2_160229556_ENST00000392783_ITGB6_chr2_161030650_ENST00000283249_length(amino acids)=1422AA_BP=1404 MESGERLPSSAASSTTPTSSSTPSVASVVSKGGLSTGVASLSSTINPCGHLFRTAGDQPFNLSTVSSAFPMVSHPVFGLHSASSGHSEFG GLGTLGTPTALAAHPQLASFPGAEWWRTTDAHTRTGATFFPPLLGIPPLFAPPAQNHDSSSFHSRTSGKSNRNGPEKGVNGSINGSNTSS VIGINTSVLSTTASSSMGQTKSTSSGGGNRKCNQEQSKNQPLDARVDKIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEE DEEEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKADGQKATEKAQEKRIHQPLPLASESQTHSFQSQQKQPQVLSQQLPFIFQS SQAKEESVNKHTSVIQSTGLVSNVKPLSLVNQAKKETYMKLIVPSPDVLKAGNKNTSEESSLLTSELRSKREQYKQAFPSQLKKQESSKS LKKVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQSKINENIAAASSTPFSSPVNLSTS GRRTPGNQTPVMPSASPILHSQGKEKAVSNNVNPVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDD SQSESDSNSESDTEGSEEEDDDDKDQDESDSDTEGEKTSMKLNKTTSSVKSPSMSLTGHSTPRNLHIAKAPGSAPAALCSESQSPAFLGT SSSTLTSSPHSGTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRDNFSFSAKIR VGDFYEARDGPQGMQWCLLKEEDVIPRIRAMEGRRGRPPNPDRQRAREESRMRRRKGRPPNVGNAEFLDNADAKLLRKLQAQEIARQAAQ IKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEK EMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRI PGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVG VNRDNVSEILQIFMEAHCGQTELTESLKTKAFQAHTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHA KKTGKRDTSGGIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQ -------------------------------------------------------------- |
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Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:160229556/chr2:161030650) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| BAZ2B | ITGB6 |
| FUNCTION: Chromatin reader protein, which may play a role in transcriptional regulation via interaction with ISWI (By similarity) (PubMed:10662543). Involved in positively modulating the rate of age-related behavioral deterioration (By similarity). Represses the expression of mitochondrial function-related genes, perhaps by occupying their promoter regions, working in concert with histone methyltransferase EHMT1 (By similarity). {ECO:0000250|UniProtKB:A2AUY4, ECO:0000303|PubMed:10662543}. | FUNCTION: Integrin alpha-V:beta-6 (ITGAV:ITGB6) is a receptor for fibronectin and cytotactin (PubMed:17545607, PubMed:17158881). It recognizes the sequence R-G-D in its ligands (PubMed:17545607, PubMed:17158881). Internalisation of integrin alpha-V/beta-6 via clathrin-mediated endocytosis promotes carcinoma cell invasion (PubMed:17545607, PubMed:17158881). ITGAV:ITGB6 acts as a receptor for fibrillin-1 (FBN1) and mediates R-G-D-dependent cell adhesion to FBN1 (PubMed:17158881). Integrin alpha-V:beta-6 (ITGAV:ITGB6) mediates R-G-D-dependent release of transforming growth factor beta-1 (TGF-beta-1) from regulatory Latency-associated peptide (LAP), thereby playing a key role in TGF-beta-1 activation (PubMed:15184403, PubMed:22278742, PubMed:28117447). {ECO:0000269|PubMed:15184403, ECO:0000269|PubMed:17158881, ECO:0000269|PubMed:17545607, ECO:0000269|PubMed:22278742, ECO:0000269|PubMed:28117447}.; FUNCTION: (Microbial infection) Integrin ITGAV:ITGB6 acts as a receptor for Coxsackievirus A9 and Coxsackievirus B1. {ECO:0000269|PubMed:15194773, ECO:0000269|PubMed:9426447}.; FUNCTION: (Microbial infection) Integrin ITGAV:ITGB6 acts as a receptor for Herpes simplex virus-1/HHV-1 (PubMed:24367260). {ECO:0000269|PubMed:24367260}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 883_1061 | 1304.3333333333333 | 2069.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 883_1061 | 1370.3333333333333 | 2135.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 883_1061 | 1368.3333333333333 | 2133.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 1334_1375 | 1404.3333333333333 | 2169.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 883_1061 | 1404.3333333333333 | 2169.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 149_265 | 1304.3333333333333 | 2069.0 | Compositional bias | Note=Ser-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 269_275 | 1304.3333333333333 | 2069.0 | Compositional bias | Note=Poly-Glu |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 595_666 | 1304.3333333333333 | 2069.0 | Compositional bias | Note=Asp/Glu-rich (acidic) |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 837_868 | 1304.3333333333333 | 2069.0 | Compositional bias | Note=Arg-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 902_1061 | 1304.3333333333333 | 2069.0 | Compositional bias | Note=Lys-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 1296_1339 | 1370.3333333333333 | 2135.0 | Compositional bias | Note=Asp-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 149_265 | 1370.3333333333333 | 2135.0 | Compositional bias | Note=Ser-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 269_275 | 1370.3333333333333 | 2135.0 | Compositional bias | Note=Poly-Glu |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 595_666 | 1370.3333333333333 | 2135.0 | Compositional bias | Note=Asp/Glu-rich (acidic) |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 837_868 | 1370.3333333333333 | 2135.0 | Compositional bias | Note=Arg-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 902_1061 | 1370.3333333333333 | 2135.0 | Compositional bias | Note=Lys-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 1296_1339 | 1368.3333333333333 | 2133.0 | Compositional bias | Note=Asp-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 149_265 | 1368.3333333333333 | 2133.0 | Compositional bias | Note=Ser-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 269_275 | 1368.3333333333333 | 2133.0 | Compositional bias | Note=Poly-Glu |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 595_666 | 1368.3333333333333 | 2133.0 | Compositional bias | Note=Asp/Glu-rich (acidic) |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 837_868 | 1368.3333333333333 | 2133.0 | Compositional bias | Note=Arg-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 902_1061 | 1368.3333333333333 | 2133.0 | Compositional bias | Note=Lys-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 1296_1339 | 1404.3333333333333 | 2169.0 | Compositional bias | Note=Asp-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 149_265 | 1404.3333333333333 | 2169.0 | Compositional bias | Note=Ser-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 269_275 | 1404.3333333333333 | 2169.0 | Compositional bias | Note=Poly-Glu |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 595_666 | 1404.3333333333333 | 2169.0 | Compositional bias | Note=Asp/Glu-rich (acidic) |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 837_868 | 1404.3333333333333 | 2169.0 | Compositional bias | Note=Arg-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 902_1061 | 1404.3333333333333 | 2169.0 | Compositional bias | Note=Lys-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 1087_1152 | 1304.3333333333333 | 2069.0 | Domain | DDT |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 739_810 | 1304.3333333333333 | 2069.0 | Domain | MBD |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 1087_1152 | 1370.3333333333333 | 2135.0 | Domain | DDT |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 739_810 | 1370.3333333333333 | 2135.0 | Domain | MBD |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 1087_1152 | 1368.3333333333333 | 2133.0 | Domain | DDT |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 739_810 | 1368.3333333333333 | 2133.0 | Domain | MBD |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 1087_1152 | 1404.3333333333333 | 2169.0 | Domain | DDT |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 739_810 | 1404.3333333333333 | 2169.0 | Domain | MBD |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 456_619 | 197.66666666666666 | 789.0 | Region | Note=Cysteine-rich tandem repeats | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 456_619 | 197.66666666666666 | 789.0 | Region | Note=Cysteine-rich tandem repeats | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 456_501 | 197.66666666666666 | 789.0 | Repeat | Note=I | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 502_543 | 197.66666666666666 | 789.0 | Repeat | Note=II | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 544_582 | 197.66666666666666 | 789.0 | Repeat | Note=III | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 583_619 | 197.66666666666666 | 789.0 | Repeat | Note=IV | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 456_501 | 197.66666666666666 | 789.0 | Repeat | Note=I | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 502_543 | 197.66666666666666 | 789.0 | Repeat | Note=II | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 544_582 | 197.66666666666666 | 789.0 | Repeat | Note=III | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 583_619 | 197.66666666666666 | 789.0 | Repeat | Note=IV | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 731_788 | 197.66666666666666 | 789.0 | Topological domain | Cytoplasmic | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 731_788 | 197.66666666666666 | 789.0 | Topological domain | Cytoplasmic | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 710_730 | 197.66666666666666 | 789.0 | Transmembrane | Helical | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 710_730 | 197.66666666666666 | 789.0 | Transmembrane | Helical |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 1334_1375 | 1304.3333333333333 | 2069.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 1334_1375 | 1370.3333333333333 | 2135.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 1334_1375 | 1368.3333333333333 | 2133.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 1296_1339 | 1304.3333333333333 | 2069.0 | Compositional bias | Note=Asp-rich |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 2077_2147 | 1304.3333333333333 | 2069.0 | Domain | Bromo |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 2077_2147 | 1370.3333333333333 | 2135.0 | Domain | Bromo |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 2077_2147 | 1368.3333333333333 | 2133.0 | Domain | Bromo |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 2077_2147 | 1404.3333333333333 | 2169.0 | Domain | Bromo |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000343439 | - | 26 | 36 | 1931_1981 | 1304.3333333333333 | 2069.0 | Zinc finger | PHD-type |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000355831 | - | 26 | 36 | 1931_1981 | 1370.3333333333333 | 2135.0 | Zinc finger | PHD-type |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392782 | - | 26 | 36 | 1931_1981 | 1368.3333333333333 | 2133.0 | Zinc finger | PHD-type |
| Hgene | BAZ2B | chr2:160229556 | chr2:161030650 | ENST00000392783 | - | 27 | 37 | 1931_1981 | 1404.3333333333333 | 2169.0 | Zinc finger | PHD-type |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 131_371 | 197.66666666666666 | 789.0 | Domain | Note=VWFA | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 131_371 | 197.66666666666666 | 789.0 | Domain | Note=VWFA | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000283249 | 3 | 15 | 22_709 | 197.66666666666666 | 789.0 | Topological domain | Extracellular | |
| Tgene | ITGB6 | chr2:160229556 | chr2:161030650 | ENST00000409872 | 4 | 16 | 22_709 | 197.66666666666666 | 789.0 | Topological domain | Extracellular |
Top |
Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| BAZ2B | |
| ITGB6 |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs to BAZ2B-ITGB6 |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
Top |
Related Diseases to BAZ2B-ITGB6 |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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