UTHEALTH HOME    ABOUT SBMI    A-Z    WEBMAIL    INSIDE THE UNIVERSITY
FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Terms of Use

Center for Computational Systems Medicine level1
leaf

Fusion Gene Summary

leaf

Fusion Gene Sample Information

leaf

Fusion ORF Analysis

leaf

Fusion Amino Acid Sequences

leaf

Fusion Protein Functional Features

leaf

Fusion Protein-Protein Interaction

leaf

Related drugs with this fusion protein

leaf

Related disease with this fusion protein

Fusion Protein:TMEM59-BAZ2B

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: TMEM59-BAZ2B
FusionPDB ID: 92174
FusionGDB2.0 ID: 92174
HgeneTgene
Gene symbol

TMEM59

BAZ2B

Gene ID

9528

29994

Gene nametransmembrane protein 59bromodomain adjacent to zinc finger domain 2B
SynonymsC1orf8|DCF1|HSPC001|PRO195|UNQ169WALp4
Cytomap

1p32.3

2q24.2

Type of geneprotein-codingprotein-coding
Descriptiontransmembrane protein 59dendritic cell factor 1liver membrane-bound proteinbromodomain adjacent to zinc finger domain protein 2B
Modification date2020031320200313
UniProtAcc.

Q9UIF8

Ensembl transtripts involved in fusion geneENST idsENST00000234831, ENST00000371341, 
ENST00000371344, ENST00000371348, 
ENST00000371337, ENST00000470395, 
ENST00000483316, ENST00000343439, 
ENST00000355831, ENST00000392782, 
ENST00000392783, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score9 X 11 X 6=5949 X 10 X 5=450
# samples 1211
** MAII scorelog2(12/594*10)=-2.30742852519225
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(11/450*10)=-2.03242147769238
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: TMEM59 [Title/Abstract] AND BAZ2B [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)TMEM59(54507397)-BAZ2B(160189197), # samples:1
Anticipated loss of major functional domain due to fusion event.TMEM59-BAZ2B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
TMEM59-BAZ2B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
TMEM59-BAZ2B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
TMEM59-BAZ2B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
TMEM59-BAZ2B seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF.
TMEM59-BAZ2B seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
TMEM59-BAZ2B seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
TMEM59-BAZ2B seems lost the major protein functional domain in Tgene partner, which is a transcription factor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneTMEM59

GO:0010955

negative regulation of protein processing

20427278

HgeneTMEM59

GO:0090285

negative regulation of protein glycosylation in Golgi

20427278

HgeneTMEM59

GO:1903077

negative regulation of protein localization to plasma membrane

20427278


check buttonFusion gene breakpoints across TMEM59 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across BAZ2B (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


Top

Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4Non-CancerERR315425TMEM59chr1

54507397

-BAZ2Bchr2

160189197

-


Top

Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000371348TMEM59chr154507397-ENST00000355831BAZ2Bchr2160189197-3074107711131787224
ENST00000371348TMEM59chr154507397-ENST00000343439BAZ2Bchr2160189197-3074107711131787224
ENST00000371348TMEM59chr154507397-ENST00000392782BAZ2Bchr2160189197-3074107711131787224
ENST00000371348TMEM59chr154507397-ENST00000392783BAZ2Bchr2160189197-3074107711131787224

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000371348ENST00000355831TMEM59chr154507397-BAZ2Bchr2160189197-0.0049455520.9950545
ENST00000371348ENST00000343439TMEM59chr154507397-BAZ2Bchr2160189197-0.0049455520.9950545
ENST00000371348ENST00000392782TMEM59chr154507397-BAZ2Bchr2160189197-0.0049455520.9950545
ENST00000371348ENST00000392783TMEM59chr154507397-BAZ2Bchr2160189197-0.0049455520.9950545

Top

Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>92174_92174_1_TMEM59-BAZ2B_TMEM59_chr1_54507397_ENST00000371348_BAZ2B_chr2_160189197_ENST00000343439_length(amino acids)=224AA_BP=
MLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKIKKLHVKGKKTNESKKGKKVTLTGDTEDEDSASTSSSLKRGNKDLK
KRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET

--------------------------------------------------------------

>92174_92174_2_TMEM59-BAZ2B_TMEM59_chr1_54507397_ENST00000371348_BAZ2B_chr2_160189197_ENST00000355831_length(amino acids)=224AA_BP=
MLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKIKKLHVKGKKTNESKKGKKVTLTGDTEDEDSASTSSSLKRGNKDLK
KRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET

--------------------------------------------------------------

>92174_92174_3_TMEM59-BAZ2B_TMEM59_chr1_54507397_ENST00000371348_BAZ2B_chr2_160189197_ENST00000392782_length(amino acids)=224AA_BP=
MLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKIKKLHVKGKKTNESKKGKKVTLTGDTEDEDSASTSSSLKRGNKDLK
KRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET

--------------------------------------------------------------

>92174_92174_4_TMEM59-BAZ2B_TMEM59_chr1_54507397_ENST00000371348_BAZ2B_chr2_160189197_ENST00000392783_length(amino acids)=224AA_BP=
MLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKIKKLHVKGKKTNESKKGKKVTLTGDTEDEDSASTSSSLKRGNKDLK
KRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET

--------------------------------------------------------------

Top

Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:54507397/chr2:160189197)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.BAZ2B

Q9UIF8

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Chromatin reader protein, which may play a role in transcriptional regulation via interaction with ISWI (By similarity) (PubMed:10662543). Involved in positively modulating the rate of age-related behavioral deterioration (By similarity). Represses the expression of mitochondrial function-related genes, perhaps by occupying their promoter regions, working in concert with histone methyltransferase EHMT1 (By similarity). {ECO:0000250|UniProtKB:A2AUY4, ECO:0000303|PubMed:10662543}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000034343931362077_21471832.02069.0DomainBromo
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000035583131362077_21471898.02135.0DomainBromo
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278231362077_21471896.02133.0DomainBromo
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278332372077_21471932.02169.0DomainBromo
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000034343931361931_19811832.02069.0Zinc fingerPHD-type
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000035583131361931_19811898.02135.0Zinc fingerPHD-type
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278231361931_19811896.02133.0Zinc fingerPHD-type
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278332371931_19811932.02169.0Zinc fingerPHD-type

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTMEM59chr1:54507397chr2:160189197ENST00000234831-58263_281208.33333333333334324.0MotifATG16L1-binding motif
HgeneTMEM59chr1:54507397chr2:160189197ENST00000234831-58260_323208.33333333333334324.0Topological domainCytoplasmic
HgeneTMEM59chr1:54507397chr2:160189197ENST00000234831-5836_238208.33333333333334324.0Topological domainExtracellular
HgeneTMEM59chr1:54507397chr2:160189197ENST00000234831-58239_259208.33333333333334324.0TransmembraneHelical
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000034343931361334_13751832.02069.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003434393136883_10611832.02069.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000035583131361334_13751898.02135.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003558313136883_10611898.02135.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278231361334_13751896.02133.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927823136883_10611896.02133.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278332371334_13751932.02169.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927833237883_10611932.02169.0Coiled coilOntology_term=ECO:0000255
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000034343931361296_13391832.02069.0Compositional biasNote=Asp-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003434393136149_2651832.02069.0Compositional biasNote=Ser-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003434393136269_2751832.02069.0Compositional biasNote=Poly-Glu
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003434393136595_6661832.02069.0Compositional biasNote=Asp/Glu-rich (acidic)
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003434393136837_8681832.02069.0Compositional biasNote=Arg-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003434393136902_10611832.02069.0Compositional biasNote=Lys-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000035583131361296_13391898.02135.0Compositional biasNote=Asp-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003558313136149_2651898.02135.0Compositional biasNote=Ser-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003558313136269_2751898.02135.0Compositional biasNote=Poly-Glu
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003558313136595_6661898.02135.0Compositional biasNote=Asp/Glu-rich (acidic)
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003558313136837_8681898.02135.0Compositional biasNote=Arg-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003558313136902_10611898.02135.0Compositional biasNote=Lys-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278231361296_13391896.02133.0Compositional biasNote=Asp-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927823136149_2651896.02133.0Compositional biasNote=Ser-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927823136269_2751896.02133.0Compositional biasNote=Poly-Glu
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927823136595_6661896.02133.0Compositional biasNote=Asp/Glu-rich (acidic)
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927823136837_8681896.02133.0Compositional biasNote=Arg-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927823136902_10611896.02133.0Compositional biasNote=Lys-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278332371296_13391932.02169.0Compositional biasNote=Asp-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927833237149_2651932.02169.0Compositional biasNote=Ser-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927833237269_2751932.02169.0Compositional biasNote=Poly-Glu
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927833237595_6661932.02169.0Compositional biasNote=Asp/Glu-rich (acidic)
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927833237837_8681932.02169.0Compositional biasNote=Arg-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927833237902_10611932.02169.0Compositional biasNote=Lys-rich
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000034343931361087_11521832.02069.0DomainDDT
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003434393136739_8101832.02069.0DomainMBD
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000035583131361087_11521898.02135.0DomainDDT
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003558313136739_8101898.02135.0DomainMBD
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278231361087_11521896.02133.0DomainDDT
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927823136739_8101896.02133.0DomainMBD
TgeneBAZ2Bchr1:54507397chr2:160189197ENST0000039278332371087_11521932.02169.0DomainDDT
TgeneBAZ2Bchr1:54507397chr2:160189197ENST000003927833237739_8101932.02169.0DomainMBD


Top

Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
TMEM59
BAZ2B


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs to TMEM59-BAZ2B


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

Top

Related Diseases to TMEM59-BAZ2B


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource