Navigation

1. Understanding of FusionPub's Annotation Category.
- Fusion Gene Search Result Page.
- Fusion Gene Annotation Result Page.
-- 1) Fusion Gene Summary.
-- 2) Fusion Gene Expressed Sample Information.
-- 3) Fusion Gene and Drug/Small Molecule Search from PubMed Abstracts.
-- 4) Fusion Gene and Diseases from the Found PubMed Abstracts.
-- 5) Fusion Gene and Diseases from Manual Curation and Other Resource.
-- 6) Details of the Found Drugs/Small Molecules.
-- 7) Clinical Trials of the Found Drugs/Small Molecules.
-- 8) Fusion-Positive Patients' Treatment Records.
-- 9) Generative AI Summary Sentence of the Relationship Between Fusion Gene and Small Molecule that Have at Least Thrree PMIDs from PubMed.
2. Download Data and Contact Us.

1. Understanding FusionPub's Annotation Categories
Search page, example: ALK
Search page, example: ALK

Input query
- Official HUGO gene symbol.

FusionGene Search Result Page

Select your kinase fusion gene from the fusion gene list.
We provide a classification in the first query search results into two Levels.

Fusion Gene Annotation Result Page

These are FusionPub's annotation categories for your query with links to their corresponding annotation parts.

1) Fusion Gene Summary.
The 'Fusion Gene Summary' category provides a gene information involved in the fusion gene.

2) Fusion Gene Expressed Sample Information.
The 'Fusion Gene Expressed Sample Information' category provides the cell-line or patient sample information, which expressed individual fusion genes.

Fusion Gene Expressed Sample Information 1

Fusion Gene Expressed Sample Information 2

3) Fusion Gene and Drug/Small Molecule Search from PubMed Abstracts.
The 'Fusion Gene and Drug/Small Molecule Search from PubMed Abstracts' category provides the found fusion gene and drug/small molecule from our PubMed search.

Fusion Gene and Drug/Small Molecule Search from PubMed Abstracts 1

Fusion Gene and Drug/Small Molecule Search from PubMed Abstracts 2

4) Fusion Gene and Diseases from the Found PubMed Abstracts.
The 'Fusion Gene and Diseases from the Found PubMed Abstracts' category provides the disease information from the MeSH term of our found PubMed Abstracts.

Fusion Gene and Diseases from the Found PubMed Abstracts 1

Fusion Gene and Diseases from the Found PubMed Abstracts 2

5) Fusion Gene and Diseases from Manual Curation and Other Resource.
The 'Fusion Gene and Diseases from Manual Curation and Other Resource' category provides the manual curation result of the fusion gene and diseases.

6) Details of the Found Drugs/Small Molecules.
The 'Details of the Found Drugs/Small Molecules' category provides the details of the found drugs/small molecules including general drug information, biochemical properties, and ADME properties.

Details of the Found Drugs/Small Molecules 1

Details of the Found Drugs/Small Molecules 2

7) Clinical Trials of the Found Drugs/Small Molecules.
The 'Clinical Trials of the Found Drugs/Small Molecules' category provides the previous and current clinical trials information of our found fusion gene and drug/small molecules from clinicaltrials.gov.

Clinical Trials of the Found Drugs/Small Molecules 1

Clinical Trials of the Found Drugs/Small Molecules 2

8) Fusion-Positive Patients' Treatment Records.
The 'Fusion-Positive Patients' Treatment Records' category provides the treated drugs of the fusion gene-positive patients of TCGA cohorts. It also provides the treatment records of pediatric sarcoma patients from the clinical data warehouse (CDW) of UTHealth.

Fusion-Positive Patients' Treatment Records2

9) Generative AI Summary Sentence of the Relationship Between Fusion Gene and Small Molecule that Have at Least Thrree PMIDs from PubMed.
The 'Generative AI Summary Sentence of the Relationship Between Fusion Gene and Small Molecule that Have at Least Thrree PMIDs from PubMed' category provides one sentence summary of the relationship between fusion gene and each found drug/small molecule from our PubMed search (if they have at least three PMIDs) using the ChatGPT-4.
Generative AI Summary Sentence of the Relationship Between Fusion Gene and Small Molecule that Have at Least Thrree PMIDs from PubMed

Example of TMPRSS2-ERG of category 8) and category 9).

2. Download data and contact us
Please go to download page and contact page.