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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: EIF3M (NCBI Gene ID:10480)


Gene Summary

check button Gene Summary
Gene InformationGene Name: EIF3M
Gene ID: 10480
Gene Symbol

EIF3M

Gene ID

10480

Gene Nameeukaryotic translation initiation factor 3 subunit M
SynonymsB5|GA17|PCID1|TANGO7|hfl-B5
Cytomap

11p13

Type of Geneprotein-coding
Descriptioneukaryotic translation initiation factor 3 subunit MB5 receptorPCI domain containing 1 (herpesvirus entry mediator)PCI domain-containing protein 1dendritic cell proteinfetal lung protein B5transport and golgi organization 7 homolog
Modification date20200313
UniProtAcc

Q7L2H7


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0006417Regulation of translation
GO:0008135Translation factor activity, RNA binding
GO:0002181Cytoplasmic translation
GO:0006413Translational initiation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
EIF3M>1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'EIF3M[title] AND translation [title] AND human.'
GeneTitlePMID
EIF3M..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST000005311203260855732608690Frame-shift
ENST000005311203261055732610681Frame-shift
ENST000005311203261645932616559Frame-shift
ENST000005311203261751132617593Frame-shift
ENST000005311203262330732623368Frame-shift

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
LUADEIF3M-1.54295739683084.40678669801292e-06
KIRCEIF3M-2.008881346589988.07326657761222e-05


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with EIF3M (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
DLBCCell metabolism geneEIF3MMIF0.8016545857.59E-12
DLBCCell metabolism geneEIF3MATP5G10.8022380597.14E-12
DLBCCell metabolism geneEIF3MSNRPB0.809766113.19E-12
DLBCCell metabolism geneEIF3MSNRPD30.8194561091.07E-12
DLBCCell metabolism geneEIF3MTOMM220.8233306796.81E-13
DLBCCell metabolism geneEIF3MPSMC30.8253047325.38E-13
DLBCCell metabolism geneEIF3MTIMM90.8270146674.37E-13
DLBCCell metabolism geneEIF3MSNRPD20.8279969723.88E-13
DLBCCell metabolism geneEIF3MPOLR2F0.8290045933.43E-13
DLBCCell metabolism geneEIF3MTIMM8B0.8303469322.90E-13
DLBCCell metabolism geneEIF3MTIMM130.8353864661.54E-13
DLBCCell metabolism geneEIF3MFAU0.8374729121.17E-13
DLBCCell metabolism geneEIF3MPFDN40.8401618758.25E-14
DLBCCell metabolism geneEIF3MPSMD130.8437685215.09E-14
DLBCCell metabolism geneEIF3MPTDSS20.8458359983.83E-14
DLBCCell metabolism geneEIF3MPOLR2L0.8550709631.03E-14
DLBCCell metabolism geneEIF3MTIMM100.8554548229.71E-15
DLBCCell metabolism geneEIF3MNME20.8772173572.91E-16
DLBCCGCEIF3MHRAS0.8587312585.95E-15
DLBCEpifactorEIF3MRRP80.8023460167.06E-12
DLBCEpifactorEIF3MBRMS10.8065867134.51E-12
DLBCEpifactorEIF3MFBL0.8223970087.60E-13
DLBCIUPHAREIF3MSLC25A30.8010365168.10E-12
DLBCIUPHAREIF3MHRAS0.8587312585.95E-15
DLBCTFEIF3MTHAP40.8139547232.01E-12
DLBCTFEIF3MNME20.8772173572.91E-16
DLBCTSGEIF3MPHB0.8031505386.49E-12
DLBCTSGEIF3MBRMS10.8065867134.51E-12
DLBCTSGEIF3MGADD45GIP10.8276113834.07E-13
PRADCell metabolism geneEIF3MTIMM90.8246706919.92E-138
TGCTCell metabolism geneEIF3MSNRPD10.8280436651.54E-40
THYMCell metabolism geneEIF3MNUDT50.8012295421.55E-28
THYMIUPHAREIF3MCSNK2B0.8290351044.46E-32
UCSCell metabolism geneEIF3MNUDT50.8012295421.55E-28
UCSIUPHAREIF3MCSNK2B0.8290351044.46E-32
UVMCell metabolism geneEIF3MTIMM90.8382556623.06E-22
UVMTSGEIF3MRBMX0.8035479842.97E-19


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
COADEIF3MEIF3K-1.815560463906970.000109195709228516
KICHEIF3MEIF3I1.573100692208020.000139892101287842
LUADEIF3MEIF3D-2.47246314411060.000299564272708473
LUADEIF3MEIF3CL-2.136162026817330.000327584192623451
PRADEIF3MEIF3A1.136803283919520.000363360004697762
LIHCEIF3MEIF3C-1.230745218839720.00126327311470459
BRCAEIF3MEIF3I-1.722334592755310.00191218761269043
LUADEIF3MEIF3J-1.11092388778780.00216965225011196
KIRPEIF3MEIF3G-2.41783229621290.00471024587750435
BLCAEIF3MEIF3A-4.451040583077470.00532913208007812
LIHCEIF3MEIF3E-5.17223325998540.00593802028362182
LUSCEIF3MEIF3CL-1.658910705926990.00704157337736851
BRCAEIF3MEIF3CL-1.451291153445640.0202464785451748
KICHEIF3MEIF3D-5.649428670230170.0202749371528625
HNSCEIF3MEIF3CL-1.693462095982130.028266192551655
UCECEIF3MEIF3G-3.350783346965710.03125
BLCAEIF3MEIF3G-3.077075596490910.0323410034179688
LUADEIF3MEIF3B-5.804355875467621.0542655358657e-09
KIRCEIF3MEIF3D-2.335018768320581.16831478033445e-08
THCAEIF3MEIF3J1.324285081751031.19078203681914e-07
BRCAEIF3MEIF3G1.879483850112711.9107949115022e-06
KIRCEIF3MEIF3B-1.563132637845172.35252849767166e-12
LIHCEIF3MEIF3D-2.518543046327992.35319665208461e-06
KICHEIF3MEIF3J2.097167491267173.19480895996094e-05
STADEIF3MEIF3B-4.77246609720073.25962901115418e-08
HNSCEIF3MEIF3B2.62025542636044.48234413852334e-06
KIRPEIF3MEIF3B-2.75922970429744.6566128730774e-09
BRCAEIF3MEIF3A-1.2182155731487.39403582934137e-06
KIRCEIF3MEIF3E-4.498241012194627.8509870430991e-09
BRCAEIF3MEIF3E-1.484083480624639.51829316317813e-08


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with EIF3M
EIF1B, EIF4A2, EIF3A, EIF3F, EIF3H, TADA2A, Eif3a, EIF3B, APP, EIF3C, EIF3E, EIF3D, EIF3I, EIF3K, EIF3L, EIF3G, gag-pol, MMS19, NPM1, EXOSC10, SRPK1, rev, FAM96B, HUWE1, EGFR, EIF3CL, USP34, HSPB1, AHCYL1, COPS4, RPN1, EIF3J, NTRK1, MED4, HERC2, Eif3e, Eif3i, Rpl35, NF2, PTP4A1, PSMD12, EIF4A1, GPBP1L1, UBE2N, CYLD, DLD, TRIM25, G3BP1, BRCA1, HNRNPL, CFTR, PSMD1, VPS72, ZNF598, RMND5A, PRPF8, EFTUD2, ESR2, HEXIM1, MEPCE, LARP7, RECQL4, ELAVL1, KCNJ2, ZFP36L2, MYC, TP53, KIAA1429, EIF4B, ATG16L1, TGFBR2, METTL3, USP14, NR2C2, GBF1, CD74, DDX60, RAB27A, BIRC3, WWP2, nsp2ab, CMTR1, ZMYND10, ABI3, TRIML2, ZNF783, CUL7, PLEKHA4, MIB1, DOK2, RAB5A, nsp1, nsp7, ESR1, CIT, ANLN, CHMP4C, ECT2, ACACA, BRD4, Apc2, BKRF1, EIF4E, ANGEL1, EIF4G3, EIF4EBP2, EIF4ENIF1, EIF4EBP1, EIF4G1, UBQLN1, FZR1, WDR5, PSD4, PNMA2, GSTA5, EP300, FBXO32, OPTN, SLFN11,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
EIF3MSTADchr113261058832610588GCMissense_Mutationp.K115N4
EIF3MKIRPchr113262389832623898ATMissense_Mutationp.N360Y4
EIF3MLIHCchr113261066332610663C-Frame_Shift_Delp.I140fs3
EIF3MCOADchr113261113032611130A-Frame_Shift_Delp.E159fs3
EIF3MLIHCchr113261653332616533T-Frame_Shift_Delp.F231fs3
EIF3MHNSCchr113261547632615476GTMissense_Mutationp.A200S3
EIF3MBRCAchr113260862532608625GCMissense_Mutationp.G37A3
EIF3MUCECchr113261548032615480GAMissense_Mutationp.R201Q3
EIF3MGBMchr113261544632615446GAMissense_Mutationp.G190R3
EIF3MUCECchr113261111632611116GTMissense_Mutationp.W154C3
EIF3MBLCAchr113262231832622318GCMissense_Mutationp.D295H2
EIF3MSTADchr113261016932610169TAMissense_Mutationp.S69T2
EIF3MUCECchr113260547532605475GTMissense_Mutationp.Q14H2
EIF3MSTADchr113262387532623875AGMissense_Mutationp.D352G2
EIF3MUCECchr113260861632608616CTMissense_Mutationp.S34L2
EIF3MSTADchr113261549432615494AGMissense_Mutationp.R206G2
EIF3MUCECchr113261754232617542GAMissense_Mutationp.A250T2
EIF3MSTADchr113261654532616545GAMissense_Mutationp.E235K2
EIF3MLIHCchr113262333432623334A-Frame_Shift_Delp.K324fs2
EIF3MUCECchr113262223432622234GTSplice_Sitee9-12
EIF3MHNSCchr113261545832615458GCMissense_Mutationp.E194Q2
EIF3MLIHCchr113262335432623354A-Frame_Shift_Delp.R330fs2
EIF3MUCECchr113262230832622308ACMissense_Mutationp.E291D2
EIF3MKIRCchr113261027232610272TCMissense_Mutationp.L103P2
EIF3MUCECchr113262237732622377CTSilentp.D3142
EIF3MCESCchr113261023432610234GASilent2
EIF3MBLCAchr113261064632610646GAMissense_Mutationp.G135R2
EIF3MLIHCchr113261027732610277TCSilent2
EIF3MGBMchr113261017432610174AGSilent1
EIF3MSKCMchr113261024432610244CTMissense_Mutationp.R94C1
EIF3MUCECchr113262223432622234GTSplice_Sitep.G267_splice1
EIF3MCOADchr113261020832610208TAMissense_Mutationp.L82M1
EIF3MOVchr113260857232608572TGSilentp.R19R1
EIF3MGBMchr113261544632615446GAMissense_Mutation1
EIF3MBLCAchr113260546432605464GAMissense_Mutationp.E11K1
EIF3MLIHCchr113261022632610227-AFrame_Shift_Insp.K88fs1
EIF3MCOADchr113261020932610209TANonsense_Mutationp.L82X1
EIF3MPAADchr113261024432610244CAMissense_Mutation1
EIF3MHNSCchr113261545832615458GCMissense_Mutation1
EIF3MBLCAchr113261548532615485GCMissense_Mutationp.D203H1
EIF3MLIHCchr113261024032610241-TFrame_Shift_Insp.S93fs1
EIF3MPRADchr113261062132610621CTSilentp.S126S1
EIF3MHNSCchr113261547632615476GTMissense_Mutation1
EIF3MBLCAchr113260863632608636GAMissense_Mutationp.D41N1
EIF3MCOADchr113261549532615495GTMissense_Mutationp.R206M1
EIF3MSARCchr113260543832605438GTMissense_Mutation1
EIF3MBLCAchr113261064632610646GAMissense_Mutation1
EIF3MBLCAchr113261542432615424AGSilentp.S182S1
EIF3MDLBCchr113262223332622233ATSplice_Site.1
EIF3MSARCchr113261020532610205GTMissense_Mutation1
EIF3MBLCAchr113262231832622318GCMissense_Mutation1
EIF3MTHCAchr113261114532611145TCMissense_Mutation1
EIF3MBLCAchr113260865732608657GTMissense_Mutationp.A48S1
EIF3MDLBCchr113261061732610617GTMissense_Mutationp.C125F1
EIF3MSARCchr113261062032610620GTMissense_Mutation1
EIF3MBLCAchr113260546432605464GAMissense_Mutation1
EIF3MTHCAchr113261114532611145TCMissense_Mutationp.L164P1
EIF3MLIHCchr113260863832608638T-Frame_Shift_Delp.D41fs1
EIF3MESCAchr113262232932622329GTMissense_Mutation1
EIF3MSARCchr113262234832622348GTMissense_Mutation1
EIF3MBLCAchr113261548532615485GCMissense_Mutation1
EIF3MTHYMchr113260861732608617GTSilentp.S34S1
EIF3MLUADchr113261027932610279GASplice_Site1
EIF3MESCAchr113261654532616545GTNonsense_Mutationp.E235X1
EIF3MSARCchr113261062032610620GTMissense_Mutationp.S126I1
EIF3MBLCAchr113260863632608636GAMissense_Mutation1
EIF3MKIRPchr113262389832623898ATMissense_Mutation1
EIF3MUCECchr113261114432611144CAMissense_Mutationp.L164I1
EIF3MCESCchr113261066432610664CAMissense_Mutation1
EIF3MLUADchr113262237832622378GTSplice_Sitep.A315_splice1
EIF3MESCAchr113262232932622329GTMissense_Mutationp.Q298H1
EIF3MSARCchr113260543832605438GTMissense_Mutationp.S2I1
EIF3MBLCAchr113260545532605455GTMissense_Mutation1
EIF3MLIHCchr113261057132610571TCMissense_Mutation1
EIF3MCESCchr113261023432610234GASilentp.L901
EIF3MLUADchr113261027932610279GASplice_Sitep.L105_splice1
EIF3MSKCMchr113261021432610214GAMissense_Mutationp.E84K1
EIF3MCOADchr113261020732610207TASilentp.A81A1
EIF3MLUSCchr113261647132616471GTMissense_Mutationp.R210L1

check buttonCopy number variation (CNV) of EIF3M
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across EIF3M
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
96910PRADTCGA-G9-6348-01AATP6AP2chrX40465889-EIF3Mchr1132611132+
96910N/AFN096427CCDC73chr1132623828-EIF3Mchr1132623846-
103100N/ANM_006360EIF3Mchr1132623368+CCDC73chr1132623825+
45813OVTCGA-57-1993-01AEIF3Mchr1132605475+CSTF3chr1133163532-
96910N/ABQ428530EIF3Mchr1132611166-EIF3Mchr1132616460+
96910N/ACA312302EIF3Mchr1132623319-EIF3Mchr1132617512+
65787STADTCGA-IN-A7NTEIF3Mchr1132605475+FAM118Achr2245726483+
94802N/ABG002942EIF3Mchr1132616166-KRT7chr1252637084-
102197N/AAF277183EIF3Mchr1132624019+NLRP5chr1956523928+
102982N/ABP428638EIF3Mchr1132608616+PPIEchr140219177+
101351N/ABC019360EIF3Mchr1132605399-SYNCRIPchr686352608-
101258SARCTCGA-DX-A1KU-01AEIF3Mchr1132617593+UEVLDchr1118591924-
96910HNSCTCGA-CQ-A4C9-01AELP4chr1131671769+EIF3Mchr1132616460+
96910BRCATCGA-C8-A12V-01APDHXchr1134979130+EIF3Mchr1132622235+
96910BRCATCGA-E2-A573-01APNNchr1439645353+EIF3Mchr1132616460+
96910CESCTCGA-WL-A834-01APRRG4chr1132860476+EIF3Mchr1132622235+
96910CESCTCGA-WL-A834-01APRRG4chr1132861785+EIF3Mchr1132622235+
96910OVTCGA-04-1350RPL5chr193297674+EIF3Mchr1132616459+
96910N/ABF753104SSRP1chr1157099366+EIF3Mchr1132610231+
96914PRADTCGA-EJ-5494-01AUPF1chr1918979038-EIF3Mchr1132611132+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
STADEIF3M0.01871310071467270.51
THCAEIF3M0.03692118870563170.96
BLCAEIF3M0.04717439355653581
KIRCEIF3M2.35218640964699e-050.00066

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LUSCEIF3M0.04478287100889351
THCAEIF3M0.04199249165406881
PAADEIF3M0.03312198610856061

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source