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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: HBS1L (NCBI Gene ID:10767)


Gene Summary

check button Gene Summary
Gene InformationGene Name: HBS1L
Gene ID: 10767
Gene Symbol

HBS1L

Gene ID

10767

Gene NameHBS1 like translational GTPase
SynonymsEF-1a|ERFS|HBS1|HSPC276|eRF3c
Cytomap

6q23.3

Type of Geneprotein-coding
DescriptionHBS1-like proteinERF3-similar proteinHsp70 subfamily B suppressor 1-like proteineRF3 family member
Modification date20200313
UniProtAcc

Q9Y450


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0006417Regulation of translation
GO:0008135Translation factor activity, RNA binding
GO:0006414Translational elongation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'HBS1L[title] AND translation [title] AND human.'
GeneTitlePMID
HBS1L..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST00000367837135290375135290476Frame-shift
ENST00000367837135307203135307321Frame-shift
ENST00000367837135360710135360905In-frame
ENST00000367837135363138135363264In-frame

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST00000367837135360710135360905718044363768478143
ENST0000036783713536313813536326471803174426843678

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
Q9Y45036781684ChainID=PRO_0000091491;Note=HBS1-like protein
Q9Y450781431684ChainID=PRO_0000091491;Note=HBS1-like protein
Q9Y45036784949Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
Q9Y45036786767Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
Q9Y45078143117117Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:20068231;Dbxref=PMID:20068231
Q9Y45078143127127Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:20068231,PMID:23186163
Q9Y45036783778Alternative sequenceID=VSP_041068;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q9Y450781433778Alternative sequenceID=VSP_041068;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
LIHCHBS1L-3.518300036812540.000568486322514105
LUADHBS1L-3.790492204773620.00334247187092709
COADHBS1L-2.331018024082620.0140064954757691
HNSCHBS1L-1.051852432104320.0462444565380338


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
HNSCHBS1L-0.1373467630.014064103
UCECHBS1L0.1548232780.02041731
KIRPHBS1L0.0531222010.042360022

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with HBS1L (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
CHOLCell metabolism geneHBS1LMANEA0.8316999911.48E-12
CHOLCGCHBS1LFGFR1OP0.8526825011.06E-13
CHOLIUPHARHBS1LPREP0.8011226693.87E-11
KICHCell metabolism geneHBS1LSSR10.8090187372.99E-22
KICHCell metabolism geneHBS1LTCP10.8501581971.59E-26
KICHCGCHBS1LCUL30.8119624831.61E-22
KICHCGCHBS1LCDC730.8339125621.07E-24
KICHEpifactorHBS1LHDAC20.8088419853.10E-22
KICHEpifactorHBS1LUCHL50.8099621682.45E-22
KICHEpifactorHBS1LCUL30.8119624831.61E-22
KICHEpifactorHBS1LMAP3K70.8216455121.91E-23
KICHEpifactorHBS1LCDC730.8339125621.07E-24
KICHIUPHARHBS1LPRPF4B0.8035655419.21E-22
KICHIUPHARHBS1LHDAC20.8088419853.10E-22
KICHIUPHARHBS1LMAP3K70.8216455121.91E-23
KICHKinaseHBS1LPRPF4B0.8035655419.21E-22
KICHKinaseHBS1LMAP3K70.8216455121.91E-23
KICHTFHBS1LATF60.817581334.74E-23
KICHTSGHBS1LCDC730.8339125621.07E-24
PRADCGCHBS1LBCLAF10.8624064423.74E-164
PRADEpifactorHBS1LPHF100.8065430433.36E-127
PRADTFHBS1LCDC5L0.8856897769.53E-185
THYMCell metabolism geneHBS1LTRDMT10.8013697551.49E-28
THYMCell metabolism geneHBS1LDCP20.8018812971.30E-28
THYMCell metabolism geneHBS1LCCNC0.829735373.56E-32
THYMCell metabolism geneHBS1LGALNT70.843888833.05E-34
THYMCell metabolism geneHBS1LNFYA0.8456178021.65E-34
THYMCGCHBS1LCCNC0.829735373.56E-32
THYMCGCHBS1LTCF120.8335303521.04E-32
THYMCGCHBS1LDEK0.8433397233.70E-34
THYMCGCHBS1LFGFR1OP0.8449453552.10E-34
THYMCGCHBS1LCTCF0.8504190322.88E-35
THYMEpifactorHBS1LMTF20.8047053536.02E-29
THYMEpifactorHBS1LSATB10.8311866732.23E-32
THYMEpifactorHBS1LMSL20.8423406225.25E-34
THYMEpifactorHBS1LDEK0.8433397233.70E-34
THYMEpifactorHBS1LCTCF0.8504190322.88E-35
THYMEpifactorHBS1LJARID20.8576197251.87E-36
THYMIUPHARHBS1LCRY10.8008474641.72E-28
THYMIUPHARHBS1LABCD30.8146867313.56E-30
THYMTFHBS1LMTF20.8047053536.02E-29
THYMTFHBS1LE2F70.8051412415.34E-29
THYMTFHBS1LZBTB20.8066375313.53E-29
THYMTFHBS1LCGGBP10.814006514.34E-30
THYMTFHBS1LSATB10.8311866732.23E-32
THYMTFHBS1LTCF120.8335303521.04E-32
THYMTFHBS1LNFYA0.8456178021.65E-34
THYMTFHBS1LZNF280D0.8467407651.10E-34
THYMTFHBS1LCTCF0.8504190322.88E-35
THYMTSGHBS1LCCNC0.829735373.56E-32
THYMTSGHBS1LCTCF0.8504190322.88E-35
UCSCell metabolism geneHBS1LTRDMT10.8013697551.49E-28
UCSCell metabolism geneHBS1LDCP20.8018812971.30E-28
UCSCell metabolism geneHBS1LCCNC0.829735373.56E-32
UCSCell metabolism geneHBS1LGALNT70.843888833.05E-34
UCSCell metabolism geneHBS1LNFYA0.8456178021.65E-34
UCSCGCHBS1LCCNC0.829735373.56E-32
UCSCGCHBS1LTCF120.8335303521.04E-32
UCSCGCHBS1LDEK0.8433397233.70E-34
UCSCGCHBS1LFGFR1OP0.8449453552.10E-34
UCSCGCHBS1LCTCF0.8504190322.88E-35
UCSEpifactorHBS1LMTF20.8047053536.02E-29
UCSEpifactorHBS1LSATB10.8311866732.23E-32
UCSEpifactorHBS1LMSL20.8423406225.25E-34
UCSEpifactorHBS1LDEK0.8433397233.70E-34
UCSEpifactorHBS1LCTCF0.8504190322.88E-35
UCSEpifactorHBS1LJARID20.8576197251.87E-36
UCSIUPHARHBS1LCRY10.8008474641.72E-28
UCSIUPHARHBS1LABCD30.8146867313.56E-30
UCSTFHBS1LMTF20.8047053536.02E-29
UCSTFHBS1LE2F70.8051412415.34E-29
UCSTFHBS1LZBTB20.8066375313.53E-29
UCSTFHBS1LCGGBP10.814006514.34E-30
UCSTFHBS1LSATB10.8311866732.23E-32
UCSTFHBS1LTCF120.8335303521.04E-32
UCSTFHBS1LNFYA0.8456178021.65E-34
UCSTFHBS1LZNF280D0.8467407651.10E-34
UCSTFHBS1LCTCF0.8504190322.88E-35
UCSTSGHBS1LCCNC0.829735373.56E-32
UCSTSGHBS1LCTCF0.8504190322.88E-35
UVMCell metabolism geneHBS1LGNAQ0.8006118824.99E-19
UVMCell metabolism geneHBS1LTRMT110.8243492345.76E-21
UVMCell metabolism geneHBS1LMANEA0.8432766189.88E-23
UVMCell metabolism geneHBS1LCCNC0.8579928422.83E-24
UVMCell metabolism geneHBS1LMED230.8917742581.38E-28
UVMCell metabolism geneHBS1LPGM30.8988294711.14E-29
UVMCell metabolism geneHBS1LNUP430.9028314662.56E-30
UVMCGCHBS1LGNAQ0.8006118824.99E-19
UVMCGCHBS1LLATS10.8193258431.56E-20
UVMCGCHBS1LFGFR1OP0.8468610224.30E-23
UVMCGCHBS1LCCNC0.8579928422.83E-24
UVMCGCHBS1LBCLAF10.8609558311.32E-24
UVMCGCHBS1LGOPC0.8743661483.29E-26
UVMEpifactorHBS1LPHF100.8012975174.42E-19
UVMEpifactorHBS1LSHPRH0.8310118831.46E-21
UVMEpifactorHBS1LASF1A0.8322169921.13E-21
UVMEpifactorHBS1LZMYND110.8376899493.46E-22
UVMEpifactorHBS1LHDAC20.8604218951.52E-24
UVMIUPHARHBS1LGNAQ0.8006118824.99E-19
UVMIUPHARHBS1LSENP60.8174171442.27E-20
UVMIUPHARHBS1LLATS10.8193258431.56E-20
UVMIUPHARHBS1LZMYND110.8376899493.46E-22
UVMIUPHARHBS1LMAP3K40.8420960181.29E-22
UVMIUPHARHBS1LTMEM30A0.8455300435.87E-23
UVMIUPHARHBS1LKATNA10.8577777952.99E-24
UVMIUPHARHBS1LHDAC20.8604218951.52E-24
UVMIUPHARHBS1LIFNGR10.8774964231.31E-26
UVMKinaseHBS1LLATS10.8193258431.56E-20
UVMKinaseHBS1LMAP3K40.8420960181.29E-22
UVMTFHBS1LZNF2920.807484261.46E-19
UVMTFHBS1LHIVEP20.8114915456.98E-20
UVMTFHBS1LHSF20.8362806144.71E-22
UVMTFHBS1LZBTB20.8471551214.02E-23
UVMTFHBS1LTBPL10.8610289681.29E-24
UVMTFHBS1LZUFSP0.9075847333.97E-31
UVMTSGHBS1LZNF2920.807484261.46E-19
UVMTSGHBS1LLATS10.8193258431.56E-20
UVMTSGHBS1LHACE10.8289103592.26E-21
UVMTSGHBS1LPDSS20.8296691031.93E-21
UVMTSGHBS1LSHPRH0.8310118831.46E-21
UVMTSGHBS1LZMYND110.8376899493.46E-22
UVMTSGHBS1LMAP3K40.8420960181.29E-22
UVMTSGHBS1LCCNC0.8579928422.83E-24


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
check button
* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
BRCAHBS1LUPF1-1.338990891513350.000117696606626909
KIRPHBS1LEXOSC1-1.331511851621030.000133869703859091
LIHCHBS1LEXOSC9-2.509530510987060.000201991820198738
STADHBS1LEXOSC9-1.452261880440180.000306400004774332
BRCAHBS1LEXOSC81.087125823343170.000406553655147176
KICHHBS1LEXOSC11.881984280356220.000556409358978271
COADHBS1LEXOSC9-2.089160353690940.000664144754409791
BRCAHBS1LABCE11.37406261466480.000669229587514616
ESCAHBS1LEXOSC5-3.734480902088760.0009765625
KICHHBS1LEXOSC81.236402951396340.00162535905838013
LUSCHBS1LPELO-1.826684077260440.00188801965955652
ESCAHBS1LEXOSC9-1.296164996967610.0029296875
LIHCHBS1LABCE11.337751210027150.0033398145023608
LIHCHBS1LUPF1-1.924913210825330.00427166918402987
STADHBS1LEXOSC3-1.951673942491260.00733334058895707
KICHHBS1LEXOSC71.116260225506060.00963503122329712
LUSCHBS1LEXOSC8-1.21714005537660.0105240117726964
HNSCHBS1LABCE11.203320812336590.0124875666290336
LUADHBS1LPELO1.124392416368240.013228736909195
UCECHBS1LEXOSC71.371417092186260.015625
BLCAHBS1LABCE1-4.088631200874710.0229873657226562
LUADHBS1LEXOSC9-1.709653543415980.0417265102143948
KIRCHBS1LPELO1.187922088455781.01627574891071e-11
BRCAHBS1LEXOSC1-3.222504859554421.01918341406027e-11
KIRCHBS1LEXOSC5-2.769083517450651.09859684701495e-11
KIRCHBS1LEXOSC9-1.805472222005861.11862284037858e-09
PRADHBS1LEXOSC5-2.702223508517161.26099370313262e-05
PRADHBS1LABCE1-2.90895135146261.31460603050763e-05
THCAHBS1LEXOSC5-1.769824630388151.55304155962675e-06
LUADHBS1LEXOSC5-2.212633837138221.8775400044567e-09
PRADHBS1LUPF11.183121365151943.77428293642232e-05
LUADHBS1LEXOSC3-2.134104269488515.48906105617824e-05
KIRPHBS1LEXOSC5-1.578995711155756.79492950439454e-06
THCAHBS1LEXOSC31.350516149083027.77019962091197e-05
BRCAHBS1LEXOSC5-1.249305539711619.66917351405126e-09


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with HBS1L
CUL3, HTT, DIS3L, APP, CPLX1, LYN, UBE2G2, SRPK2, SRPK1, FANCI, PELO, MAP3K1, CACNG2, MSX2, EXOSC3, EXOSC7, EXOSC8, STK25, EIF2S3, RPS20, RPS5, NTRK1, CEP19, XPO1, EXOSC9, Rpl35, Exosc1, EXOSC6, EXOSC5, EXOSC4, EXOSC1, EIF1AD, ISOC2, RAB39B, JMJD6, UHRF1, LIN9, GCHFR, LAMP3, CIT, GFI1B, HBS1L, INTS5, PSMD1, WDR61, HIF1AN, EGLN3, EFTUD2, ARIH1, HECTD1, RECQL4, MYC, NR2C2, BICD2, HOOK3, APEX1, STAU1, BRD7, ESR1, INS, Rnf183, COPS5, EIF4E2, GIGYF2, MPHOSPH6, SKIV2L2, ZCCHC8, EXOSC10, EXOSC2, RBM7, TULP3, DDRGK1, TP53, NBR1, CXCR4, CD6, ISCA2, CCDC85A, SLC31A1, PRPS2, C1orf35, HS1BP3, GOPC, PIPSL, C11orf87, PTGES3, PIAS4, FAXC, DNAJA2, FAM133A, SURF6, GPX1, AIFM1, LIPA, DTYMK, EPB41L5, EP300, SIRT6,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
HBS1Lchr6135287462ACsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
HBS1Lchr6135323961CGsingle_nucleotide_variantBenignnot_providedSO:0001583|missense_variant,SO:0001623|5_prime_UTR_variantSO:0001583|missense_variant,SO:0001623|5_prime_UTR_variant
HBS1Lchr6135323972CTsingle_nucleotide_variantBenignnot_providedSO:0001583|missense_variant,SO:0001623|5_prime_UTR_variantSO:0001583|missense_variant,SO:0001623|5_prime_UTR_variant
HBS1Lchr6135371730CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variant,SO:0001623|5_prime_UTR_variantSO:0001819|synonymous_variant,SO:0001623|5_prime_UTR_variant
HBS1Lchr6135371763GAsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variant,SO:0001623|5_prime_UTR_variantSO:0001819|synonymous_variant,SO:0001623|5_prime_UTR_variant
HBS1Lchr6135376209TGsingle_nucleotide_variantUncertain_significancenot_provided


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples

check buttonCopy number variation (CNV) of HBS1L
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across HBS1L
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
97743PAADTCGA-IB-A7LX-01AAHI1chr6135715914-HBS1Lchr6135287611-
98257ESCATCGA-L5-A8NEHBS1Lchr6135360710-AHI1chr6135788772-
101518BRCATCGA-BH-A1F0-01AHBS1Lchr6135318535-ARMC2chr6109197346+
35724PRADTCGA-EJ-7794HBS1Lchr6135371719-IL9chr5135228199-
35724PRADTCGA-EJ-7794-01AHBS1Lchr6135371719-IL9chr5135228198-
35724PRADTCGA-EJ-7794-01AHBS1Lchr6135371720-IL9chr5135228199-
102823LIHCTCGA-CC-A7IHHBS1Lchr6135360710-POLNchr42087471-
89398Non-Cancer2397NHBS1Lchr6135360710-RWDD1chr6116901457+
90875STADTCGA-VQ-A8PDHBS1Lchr6135375786-SCAF8chr6155095122+
97743BRCATCGA-E2-A155MBOAT1chr620212366-HBS1Lchr6135371785-
97743BRCATCGA-E2-A155-01AMBOAT1chr620212367-HBS1Lchr6135371785-
97743N/AAJ711522NDUFA9chr124796399+HBS1Lchr6135401752+
97743N/ACV361974PGBD5chr1230480916-HBS1Lchr6135304634-
97743N/ACB051421SIDT1chr3113307458-HBS1Lchr6135314899+
97743BRCATCGA-BH-A1F0-01ATBC1D32chr6121600267-HBS1Lchr6135315013-
97771BRCATCGA-C8-A26ZUTRNchr6144999714+HBS1Lchr6135323980-


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
KIRPHBS1L0.001918804205124630.054
PAADHBS1L0.01599201993161180.43
TGCTHBS1L0.01941334586648290.5
ESCAHBS1L0.04174607063896371
HNSCHBS1L0.04379979154482221

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
OVHBS1L7.17167540027826e-060.00024

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source