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Translation Factor: MTPN (NCBI Gene ID:136319) |
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Gene Summary |
Gene Information | Gene Name: MTPN | Gene ID: 136319 | Gene Symbol | MTPN | Gene ID | 136319 |
Gene Name | myotrophin | |
Synonyms | GCDP|V-1 | |
Cytomap | 7q33 | |
Type of Gene | protein-coding | |
Description | myotrophingranule cell differentiation proteinprotein V-1 | |
Modification date | 20200313 | |
UniProtAcc | P58546 |
Child GO biological process term(s) under GO:0006412 |
GO ID | GO term |
GO:0006417 | Regulation of translation |
GO:0006412 | Translation |
Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MTPN | GO:0008361 | regulation of cell size | 10329199 |
Hgene | MTPN | GO:2000812 | regulation of barbed-end actin filament capping | 16895918 |
Inferred gene age of translation factor. |
Gene | Inferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25 |
MTPN | (733 - 1119.25] |
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We searched PubMed using 'MTPN[title] AND translation [title] AND human.' |
Gene | Title | PMID |
MTPN | . |
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Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. For more annotations, please visit our ExonSkipDB. |
Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | ORF |
ENST00000393085 | 135635346 | 135635430 | In-frame |
Exon skipping position in the amino acid sequence. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | Len(transcript seq) | Exon skip start (mRNA) | Exon Skip end (mRNA) | Len(amino acid seq) | Exon skip start (AA) | Exon Skip end (AA) |
ENST00000393085 | 135635346 | 135635430 | 3755 | 403 | 486 | 118 | 62 | 90 |
Potentially (partially) lost protein functional features of UniProt. |
UniProtAcc | Exon skip start (AA) | Exon Skip end (AA) | Function feature start (AA) | Function feature end (AA) | Functional feature type | Functional feature desc. |
P58546 | 62 | 90 | 2 | 118 | Chain | ID=PRO_0000067031;Note=Myotrophin |
P58546 | 62 | 90 | 34 | 66 | Repeat | Note=ANK 2 |
P58546 | 62 | 90 | 67 | 99 | Repeat | Note=ANK 3 |
P58546 | 62 | 90 | 71 | 78 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3AAA |
P58546 | 62 | 90 | 81 | 89 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3AAA |
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Gene expression level across TCGA pancancer |
Gene expression level across GTEx pantissue |
Expression level of gene isoforms across TCGA pancancer |
Expression level of gene isoforms across GTEx pantissue |
Cancer(tissue) type-specific expression level of Translation factor using z-score distriution |
Differential expression between tumor and matched normal (in the cancer types with more than 10 matched samples) |
Cancer type | Translation factor | FC | adj.pval |
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Translation factor expression regulation through miRNA binding |
Cancer type | Gene | miRNA | TargetScan binding score (Context++ score percentile) | Coefficient | Pvalue |
Translation factor expression regulation through methylation in the promoter of Translation factor |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
Translation factor expression regulation through methylation in the gene body of Translation factor (positive regulation) |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
Translation factor expression regulation through copy number variation of Translation factor |
Cancer type | Gene | Coefficient | Pvalue |
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Strongly correlated genes belong to cellular important gene groups with MTPN (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green) |
Cancer type | Gene group | Translation factor | Correlated gene | Coefficient | Pvalue |
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Protein 3D structure Visit iCn3D. |
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Protein-protein interaction networks * Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
Overlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
* Edge colors based on TCGA cancer types. |
* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P)) |
Cancer type | Translation factor | Interacting protein coding gene | FC | adj.pval |
LUAD | MTPN | TMOD4 | 1.63300941831594 | 0.00013655479316203 |
BRCA | MTPN | TMOD4 | 1.92082408765979 | 0.000142811665900358 |
STAD | MTPN | ENOPH1 | -1.66097295638803 | 0.000234263017773628 |
HNSC | MTPN | ADD2 | -3.08384407957924 | 0.000758805770146865 |
BLCA | MTPN | ENOPH1 | -1.75040581836594 | 0.00141143798828125 |
HNSC | MTPN | TMOD4 | -1.20421367850514 | 0.00343508452415636 |
CHOL | MTPN | ENOPH1 | -1.80890265932286 | 0.00390625 |
KIRP | MTPN | EEF1B2 | -1.62568748251449 | 0.00571200484409928 |
PRAD | MTPN | FAM60A | -1.37150553804224 | 0.00655955789452538 |
LUSC | MTPN | ADD2 | 2.75632551555956 | 0.0103579966452505 |
PRAD | MTPN | GRK6 | -2.19629245957589 | 0.0109157868561552 |
STAD | MTPN | ADD2 | 1.22005738550552 | 0.0132303284481168 |
KICH | MTPN | EEF1B2 | 1.73127861365818 | 0.0135546922683716 |
KICH | MTPN | ADD1 | -2.16290804655603 | 0.0173123478889465 |
ESCA | MTPN | ENOPH1 | -2.62875197159135 | 0.0244140625 |
STAD | MTPN | GRK6 | 1.52473041812314 | 0.0358188794925809 |
CHOL | MTPN | ADD1 | -2.29256488852449 | 0.0390625 |
UCEC | MTPN | ENOPH1 | -6.38598223149928 | 0.046875 |
PRAD | MTPN | ADD1 | -1.15038689909588 | 1.12934832314652e-06 |
THCA | MTPN | FAM60A | -1.54138202308325 | 1.23726554130083e-06 |
LIHC | MTPN | GRK6 | -1.92219472364372 | 1.3228314710996e-06 |
COAD | MTPN | ADD2 | 1.18245660484585 | 1.33216381072998e-05 |
BRCA | MTPN | DMAP1 | 1.27331169583375 | 1.6127659552001e-07 |
KIRC | MTPN | ADD2 | -1.69748946325583 | 1.88617492161823e-09 |
KIRP | MTPN | GRK6 | -1.47684059167565 | 2.0815059542656e-07 |
KIRP | MTPN | ADD2 | -1.46354416209115 | 4.5965425670147e-06 |
COAD | MTPN | DMAP1 | 1.69072276269282 | 9.14931297302247e-06 |
Protein-protein interactors with this translation factor (BIOGRID-3.4.160) |
PPI interactors with MTPN |
DSTYK, RELA, NFKB1, REL, MAPK1, ELAVL1, NPLOC4, ATP6V1A, MTAP, OXCT1, PDIA3, PTPN11, RAB1A, RBBP4, DPY30, GARS, NUP93, PIP4K2A, PIP4K2C, UBA1, CEP170, CEP290, CNTROB, SPICE1, CEP135, CEP164, CNTRL, DCTN1, SASS6, TMEM237, MCM2, OTUB1, ZNF131, SOD1, HHV8GK18_gp78, TRIM14, AAR2, PIH1D1, AGR2, FXN, LAP3, LACTB2, PMPCA, CRYZ, COX4I1, CLIC4, ALDH4A1, GLRX5, MSRB3, GUK1, COA7, MPST, ANXA1, C21orf33, HADH, DGUOK, GSTP1, PRDX6, SPR, AK2, AK4, HINT1, GIMAP8, ISCA2, RAB11FIP5, PSAP, TXN, TXNDC12, ORF3a, E, KIF14, ARHGAP11B, ARHGAP35, HNRNPH1, DNAJA3, DNAJB5, DNAJC4, TRIM24, ARHGDIA, MDH1, TBCA, DDTL, CYCS, CSTB, RPS28, DDX58, PMAIP1, HTRA4, NAA40, MSH3, GLDC, MCTS1, METTL2B, HMCES, ADSL, PLCG1, PALLD, CTH, DDX59, FAM188A, ZC3HAV1L, IKBKG, IBA57, MPP2, FAM49B, FTO, EFHD2, UBLCP1, RECQL, C12orf5, GMPS, HDHD3, FARSB, PLS1, LRRC40, BOLA3, DIS3, ACSF3, PTER, CAPZA2, CAPZB, CASP6, SHC1, SCLY, GNB1L, KLHL42, DNPEP, SNX27, THNSL1, CMAS, PBK, PNPO, FAM120B, NADK2, DNAJC2, HNRNPLL, LANCL2, NT5C3B, |
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Clinically associated variants from ClinVar. |
Gene | Chr | Position | RefSeq | VarSeq | RefSeeq | VarType | Pathogenic | Disease | VarInfo |
nsSNVs with sample frequency (size of circle) from TCGA 33 cancers. |
SNVs and Indels |
Gene | Cancer type | Chromosome | Start | End | RefSeeq | MutSeq | Mutation type | AAchange | # samples |
MTPN | STAD | chr7 | 135614721 | 135614721 | C | T | Missense_Mutation | p.A104T | 4 |
MTPN | SKCM | chr7 | 135636300 | 135636300 | G | A | Silent | p.L51L | 2 |
MTPN | UCEC | chr7 | 135635429 | 135635429 | G | T | Missense_Mutation | p.A63D | 2 |
MTPN | UCEC | chr7 | 135661831 | 135661831 | G | T | Missense_Mutation | p.F6L | 2 |
MTPN | COAD | chr7 | 135635388 | 135635388 | A | C | Missense_Mutation | p.Y77D | 1 |
MTPN | LUSC | chr7 | 135661836 | 135661836 | C | G | Missense_Mutation | p.E5Q | 1 |
MTPN | HNSC | chr7 | 135635385 | 135635385 | C | T | Missense_Mutation | 1 | |
MTPN | HNSC | chr7 | 135635385 | 135635385 | C | T | Missense_Mutation | p.E78K | 1 |
MTPN | SKCM | chr7 | 135614697 | 135614697 | C | G | Missense_Mutation | p.A112P | 1 |
MTPN | LGG | chr7 | 135614721 | 135614721 | C | A | Missense_Mutation | p.A104S | 1 |
MTPN | SKCM | chr7 | 135636343 | 135636343 | C | T | Silent | p.R36R | 1 |
MTPN | LIHC | chr7 | 135614722 | 135614722 | G | - | Frame_Shift_Del | 1 | |
MTPN | LIHC | chr7 | 135661814 | 135661814 | T | - | Frame_Shift_Del | p.N12fs | 1 |
MTPN | STAD | chr7 | 135636279 | 135636280 | - | T | Frame_Shift_Ins | p.G58fs | 1 |
MTPN | BLCA | chr7 | 135635365 | 135635365 | C | T | Silent | 1 | |
MTPN | LIHC | chr7 | 135635362 | 135635362 | T | - | Frame_Shift_Del | p.K85fs | 1 |
MTPN | STAD | chr7 | 135636280 | 135636281 | - | T | Frame_Shift_Ins | p.K57fs | 1 |
MTPN | BLCA | chr7 | 135614740 | 135614740 | T | C | Silent | 1 | |
MTPN | LIHC | chr7 | 135635373 | 135635373 | A | - | Frame_Shift_Del | p.S82fs | 1 |
MTPN | TGCT | chr7 | 135635404 | 135635404 | A | G | Silent | 1 | |
MTPN | BLCA | chr7 | 135661868 | 135661868 | G | A | Missense_Mutation | 1 | |
MTPN | LIHC | chr7 | 135612387 | 135612387 | T | C | Missense_Mutation | 1 | |
MTPN | BLCA | chr7 | 135635365 | 135635365 | C | T | Silent | p.V84V | 1 |
MTPN | LIHC | chr7 | 135612338 | 135612338 | A | G | Missense_Mutation | 1 | |
MTPN | COAD | chr7 | 135614713 | 135614713 | T | C | Silent | p.E106E | 1 |
MTPN | LUAD | chr7 | 135614761 | 135614761 | C | A | Splice_Site | 1 |
Copy number variation (CNV) of MTPN * Click on the image to open the original image in a new window. |
Fusion gene breakpoints (product of the structural variants (SVs)) across MTPN * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion genes with this translation factor from FusionGDB2.0. |
FusionGDB2 ID | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
71282 | STAD | TCGA-HU-8238-01A | BAIAP2L1 | chr7 | 98030114 | - | MTPN | chr7 | 135636378 | - |
71282 | N/A | CB149514 | CFL1 | chr11 | 65623142 | - | MTPN | chr7 | 135612472 | - |
71282 | N/A | AW608046 | LUZP6 | chr7 | 135612612 | + | MTPN | chr7 | 135612614 | + |
71282 | N/A | AW608050 | LUZP6 | chr7 | 135612656 | + | MTPN | chr7 | 135612658 | + |
71282 | N/A | AW608053 | LUZP6 | chr7 | 135612618 | + | MTPN | chr7 | 135612620 | + |
79571 | N/A | BQ325609 | MTPN | chr7 | 135613459 | + | CA12 | chr15 | 63617364 | - |
95456 | N/A | AW580203 | MTPN | chr7 | 135612098 | + | LUZP6 | chr7 | 135612100 | + |
95456 | N/A | AW608048 | MTPN | chr7 | 135612638 | + | LUZP6 | chr7 | 135612640 | + |
95456 | N/A | AW608054 | MTPN | chr7 | 135612618 | + | LUZP6 | chr7 | 135612620 | + |
95456 | N/A | AW608063 | MTPN | chr7 | 135611987 | + | LUZP6 | chr7 | 135611989 | + |
95456 | N/A | EC464354 | MTPN | chr7 | 135612701 | + | LUZP6 | chr7 | 135612704 | + |
95456 | N/A | EC570737 | MTPN | chr7 | 135612329 | + | LUZP6 | chr7 | 135612331 | + |
71282 | N/A | BU608013 | MTPN | chr7 | 135611719 | + | MTPN | chr7 | 135611937 | - |
71290 | STAD | TCGA-BR-A4J7-01A | RAB2A | chr8 | 61429812 | + | MTPN | chr7 | 135614760 | - |
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Kaplan-Meier plots with logrank tests of overall survival (OS) |
Cancer type | Translation factor | Coefficent | Hazard ratio | Wald test pval | Likelihool ratio pval | Logrank test pval | # samples |
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Differential gene expression between female and male. (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
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Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
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Drugs targeting genes involved in this translation factor. (DrugBank Version 5.1.8 2021-05-08) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Diseases associated with this translation factor. (DisGeNet 4.0) |
Disease ID | Disease Name | # PubMeds | Disease source |
C0019193 | Hepatitis, Toxic | 1 | CTD_human |
C1262760 | Hepatitis, Drug-Induced | 1 | CTD_human |
C3658290 | Drug-Induced Acute Liver Injury | 1 | CTD_human |
C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
C4279912 | Chemically-Induced Liver Toxicity | 1 | CTD_human |